mRNA_A-nodosum_M_contig922.22.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: D8LRP1_ECTSI (Letm1 RBD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP1_ECTSI) HSP 1 Score: 357 bits (915), Expect = 1.260e-113 Identity = 193/353 (54.67%), Postives = 247/353 (69.97%), Query Frame = 1
Query: 91 GALNVVRDFVVHAKTGTVALWSNFQTSRDIRKRVRGGHQLTYAEHIHLERGADDRRKLLQYAVIYAISPQTFPYVVLYAPSLLPSTFEKPHAVRAKYKRLALERVAATLTGLFQIERQLLDADAKLKGKPRTPGARQTRRIEALETQKEETLKILSTDSKKRAFELLQGHIVVAVPPTSGERQGSGADEQMDQGKKSSKSKKEKLPKACEGLPDPAAKALGKGMGLAGWRGIAPAFYARFMLNEYVKGLGKGDEVLRRRPLDSLSDSDLREACNARAIDIGD---GERGGNAQALRTSLAEWLELTSAEGVAARRAGPGMVFLPDRARLLGLGLNFLENTRTGQRAELARKAV 1140
G +N RDF HA+ GT ALW NF+TS+DIRKRV+ GH +TYAEH HLERGA DRRKLLQY + YA+SPQ F YVV Y P LLPSTF KPH +R+KY RLALER +AT + +E +LL A+ KGKPR G+RQ++++E LE Q+E L +L DSK++ FE Q H+VV+ P + + ++ + K K +K KLP A +G+P+ K LGKG GL+GW ++P FY R+ L+E ++ LGK D+VLR L+SLSDSDLREAC+ARAI++G+ G+R Q LR SL EWL+LTS E A + GP VFLPDRARLLGLGLN LE+ R G+ AEL RKA+
Sbjct: 119 GIVNTFRDFWGHARDGTFALWGNFKTSQDIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSPQNFVYVVWYVPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVVSAPASPDPENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIKTLGKGTGLSGWWHVSPGFYVRYCLSERLRDLGKMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDR--EPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKAL 469
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: A0A836CMC6_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC6_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.940e-38 Identity = 112/350 (32.00%), Postives = 177/350 (50.57%), Query Frame = 1
Query: 94 ALNVVRDFVVHAKTGTVALWSNFQTSRDIRKRVR--GGHQLTYAEHIHLERGADDRRKLLQYAVIYAISPQTFPYVVLYAPSLLPSTFEKPHAVRAKYKRLALERVAATLTGLFQIERQLLDADAKLKGKPRTPGARQTRRIEALETQKEETLKILSTDSKKRAFELLQGHIVVAVPPTSGERQGSGADEQMDQGKKSSKSKKEKLPKACEGLPDPAAKALGKGMGLAG-WRGIAPAFYARFMLNEYVKGLGKGDEVLRRRPLDSLSDSDLREACNARAIDIGDGERGGNAQALRTSLAEWLELTSAE-GVAARRAGPGMVFLPDRARLLGLGLNFLENTRTGQRAELAR 1131
A ++V+D K G W +FQ + IR+R+R G +TY E + L+RG +DR KLLQ V++ P+ P+V+ + P ++PSTFE +++ RV A L L ++++ L+ + K +R+E + +E ++++ + + AF + + H VP AD Q +++ + + P EG+P P AK L K +GL W PAF R L E+++ + GD VL R PLD+L +LREA ARA+D + + LR LAEWL LT A GV AG VF+P+RA+ L +N + + R + +EL +
Sbjct: 20 AADMVKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEK-------------KRVEFAQY-REAAVRVMKAHTCEDAFGVFEAHTFALVP----------ADTDAQQRRRA----RPRPPTTVEGMPGPLAKGLAKALGLCTPWM---PAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDE----RELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESELPK 334
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: A0A6H5L818_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L818_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 9.500e-19 Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 724 LPDPAAKALGKGMGLAGWRGIAPAFYARFMLNEYVKGLGKGDEVLRRRPLDSLSDSDLREACNARAIDIGD---GERGGNAQALRTSLAEWLELTSAEGVAARRAGP 1035
+P+ +ALGKG GL+GW I+P FY R+ L+E ++ LG+ E+LR L+SLSDSDLREAC+ARAI++G+ G+R Q LR L WL+LTS E A + P
Sbjct: 63 VPNAYIEALGKGTGLSGWCHISPGFYVRYCLSERLRDLGRMIEILRTVSLESLSDSDLREACDARAINVGNRLGGDR--EPQDLRKPLGGWLDLTSPEVSAGSKLDP 167
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: B7FW20_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW20_PHATC) HSP 1 Score: 67.4 bits (163), Expect = 4.000e-8 Identity = 80/311 (25.72%), Postives = 137/311 (44.05%), Query Frame = 1
Query: 208 LTYAEHIHLERGADDRRKLLQYAVIYAISPQTFPYVVLYAPSLLPSTFEKPHAVRAKYKRLALERVAATLTGLFQIERQLLDADAKLKGKPRTPGARQTRRIEALETQKEETLKILSTDS------KKRAFELLQGHIVVAVPPTSGERQGSGADEQMDQGKKSSKSKKEKLPKACEGLPDPAAKALGKGMGLAGW-RGIAPAFYARFMLNEYVKGLGKGDEVLRRRPLD--SLSDSDLREACNARAIDIGDGERGGNAQALRTSLAEWLELTSAEGVAARRAGPGMVFLPDRARLLGLGLNFLENTRTGQ 1113
+ Y E++ L++G +DR KL+ + +P+ PY +++ P +LPS F P K+ + +R A L L Q+E+Q A K G +Q ++ A+ T E L + S R + + ++ + V ++ D+G S K+K+ C+ +P K LG +G AG+ ++P F R + +VK + D L + +D ++S L+EAC+ R I G L++ L+ WL L E M F + AR +G + L+ TR G+
Sbjct: 142 IEYEEYMFLQKGKEDRGKLMNVVFLMWGAPRFLPYALMFNPEMLPSPFLSPGPESVLEKK-SRQRSTAVLECLLQLEQQAKAVPALSKLNI-FGGKKQQVKMNAMHTFNERVASFLISSSCQGHEGASRVLQEIGAYLYLPVD-----------EDAPDRGDFSRKAKR-----LCD-VPPTVIKGLGSAIGNAGFFASVSPNFLNRGKILGHVKKIADADHFLVQANIDLTTISWRLLQEACSDRLI----GNAASTPDELQSMLSSWLRLVVYEPA----KHDSMHFNSNLARTSLMGYHALQATRDGR 425
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: A0A433D1P3_9FUNG (LETM1-like protein-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D1P3_9FUNG) HSP 1 Score: 57.8 bits (138), Expect = 2.830e-5 Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 109 RDFVVHAKTGTVALWSNFQTSRDIRKRVRGGHQLTYAEHIHLERGADDRRKLLQYAVIYAISPQTFPYVVLYAPSLLPST 348
++ V K G LW N + ++++R+ R G++L E + D RKL+ + VI AI P+ P++V +APSL+PST
Sbjct: 100 KELAVFYKNGVKLLWGNRKKAKELREAQRQGYKLNRKEFQLVHTTKKDMRKLIPFVVILAILPELIPFIVAFAPSLVPST 179
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: A0A1Y1Z8X8_9FUNG (LETM1-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8X8_9FUNG) HSP 1 Score: 57.4 bits (137), Expect = 3.580e-5 Identity = 31/115 (26.96%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 94 ALNVVRDFVVHAKTGTVALWSNFQTSRDIRKRVRGGHQLTYAEHIHLERGADDRRKLLQYAVIYAISPQTFPYVVLYAPSLLPSTFEKPHAVRAKYKRLALERVAATLTGLFQIE 438
A+ ++ +V K G +SN + ++ ++K+ G +LT E+ + R D RKL+ +A + + P+ P+++++APS++PST + K K++ +R A + L +E
Sbjct: 83 AMERFKELLVFYKNGIKQTFSNKKMAKGLKKKQAAGQELTRKEYQLISRAFADSRKLVPFAFLLVLFPEAIPFILVFAPSVVPSTCITEKQMENKIKKVNEKRQAIVQSVLDSLE 197 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig922.22.1 >prot_A-nodosum_M_contig922.22.1 ID=prot_A-nodosum_M_contig922.22.1|Name=mRNA_A-nodosum_M_contig922.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp MDQGKKSSKSKKEKLPKACEGLPDPAAKALGKGMGLAGWRGIAPAFYARFback to top mRNA from alignment at A-nodosum_M_contig922:158520..162389- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig922.22.1 ID=mRNA_A-nodosum_M_contig922.22.1|Name=mRNA_A-nodosum_M_contig922.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3870bp|location=Sequence derived from alignment at A-nodosum_M_contig922:158520..162389- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig922:158520..162389- >mRNA_A-nodosum_M_contig922.22.1 ID=mRNA_A-nodosum_M_contig922.22.1|Name=mRNA_A-nodosum_M_contig922.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig922:158520..162389- (Ascophyllum nodosum dioecious)back to top |