prot_A-nodosum_M_contig922.22.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig922.22.1
Unique Nameprot_A-nodosum_M_contig922.22.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length165
Homology
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BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: D8LRP1_ECTSI (Letm1 RBD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP1_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.610e-44
Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = 0 
Query:    6 KSSKSKKEKLPKACEGLPDPAAKALGKGMGLAGWRGIAPAFYARFMLNEYVKGLGKGDEVLRRRPLDSLSDSDLREACNARAIDIGD---GERGGNAQALRTSLAEWLELTSAEGVAARRAGPGMVFLPDRARLLGLGLNFLENTRTGQRAELARKAV 160
            K  K +K KLP A +G+P+   K LGKG GL+GW  ++P FY R+ L+E ++ LGK D+VLR   L+SLSDSDLREAC+ARAI++G+   G+R    Q LR SL EWL+LTS E  A  + GP  VFLPDRARLLGLGLN LE+ R G+ AEL RKA+
Sbjct:  314 KKPKPQKLKLPPASKGVPNAYIKTLGKGTGLSGWWHVSPGFYVRYCLSERLRDLGKMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDR--EPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKAL 469
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BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Match: A0A6H5L818_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L818_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.670e-21
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 0 
Query:   22 LPDPAAKALGKGMGLAGWRGIAPAFYARFMLNEYVKGLGKGDEVLRRRPLDSLSDSDLREACNARAIDIGD---GERGGNAQALRTSLAEWLELTSAEGVAARRAGP 125
            +P+   +ALGKG GL+GW  I+P FY R+ L+E ++ LG+  E+LR   L+SLSDSDLREAC+ARAI++G+   G+R    Q LR  L  WL+LTS E  A  +  P
Sbjct:   63 VPNAYIEALGKGTGLSGWCHISPGFYVRYCLSERLRDLGRMIEILRTVSLESLSDSDLREACDARAINVGNRLGGDR--EPQDLRKPLGGWLDLTSPEVSAGSKLDP 167
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig922.22.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP1_ECTSI2.610e-4456.96Letm1 RBD domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L818_9PHAE2.670e-2149.53LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011685LETM1-likePFAMPF07766LETM1coord: 22..118
e-value: 1.7E-10
score: 40.7
IPR033122LETM1, ribosome-binding domainPROSITEPS51758LETM1_RBDcoord: 1..164
score: 9.685709

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig922contigA-nodosum_M_contig922:159182..159676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig922.22.1mRNA_A-nodosum_M_contig922.22.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig922 158520..162389 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig922.22.1 ID=prot_A-nodosum_M_contig922.22.1|Name=mRNA_A-nodosum_M_contig922.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
MDQGKKSSKSKKEKLPKACEGLPDPAAKALGKGMGLAGWRGIAPAFYARF
MLNEYVKGLGKGDEVLRRRPLDSLSDSDLREACNARAIDIGDGERGGNAQ
ALRTSLAEWLELTSAEGVAARRAGPGMVFLPDRARLLGLGLNFLENTRTG
QRAELARKAVLRSW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011685LETM1-like
IPR033122LETM1_RBD