mRNA_A-nodosum_M_contig921.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig921.10.1
Unique NamemRNA_A-nodosum_M_contig921.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Match: A0A6H5K9P7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.090e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    4 GDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFRSLLNSKSDMID---ADIPKRLP 207
            GDQ GF++++K + +E  K   SQ I+DE+G++LRD   IR+RW R+F +LLN K   ID   AD  KR P
Sbjct:  160 GDQAGFYRHLKMIDVE-GKTFTSQNIKDEDGKVLRDPTCIRQRWARWFHTLLNIKPPTIDLHAADKVKRWP 229
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BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Match: A0A6H5L949_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L949_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-7
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 GDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFRSLLNSKSDMID 183
            GDQ GF++++K + +E  +   SQ I+DE+G++ RD A IR+R  R+F  LLN+KS  ID
Sbjct:   93 GDQAGFYRHLKMIDVERKRSFTSQNIKDEDGKVPRDPAFIRQRCARWFHKLLNTKSPTID 152
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BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Match: A0A6H5KGW3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.760e-5
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 GDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFRSLL 159
            GDQ GF++++K + +E    + SQ I+D++G++LRD   IR+RW R+F  LL
Sbjct:   50 GDQAGFYRHLKMIDVEGKSSLNSQNIKDKDGKVLRDPTFIRQRWARWFHKLL 101
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9P7_9PHAE9.090e-847.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L949_9PHAE1.130e-746.67Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KGW3_9PHAE1.760e-544.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig921contigA-nodosum_M_contig921:216297..216536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size242
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870390.2779837-CDS-A-nodosum_M_contig921:216296..2165361680870390.2779837-CDS-A-nodosum_M_contig921:216296..216536Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig921 216297..216536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig921.10.1prot_A-nodosum_M_contig921.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig921 216297..216536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig921.10.1

>prot_A-nodosum_M_contig921.10.1 ID=prot_A-nodosum_M_contig921.10.1|Name=mRNA_A-nodosum_M_contig921.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
MGDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFR
SLLNSKSDMIDADIPKRLPQHPVASALGIE
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mRNA from alignment at A-nodosum_M_contig921:216297..216536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig921.10.1 ID=mRNA_A-nodosum_M_contig921.10.1|Name=mRNA_A-nodosum_M_contig921.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig921:216297..216536- (Ascophyllum nodosum dioecious)
ATGGGGGATCAGCACGGATTCTTTCAAAACATCAAATCGGTGCAACTGGA
GGAGACAAAGAAGGTGGAATCACAATGCATCCGTGACGAGGAAGGAAGAC
TGTTGCGCGACAAAGCGCGTATTCGCGAGAGGTGGGTGAGATTCTTCCGC
TCACTGCTGAACTCTAAATCCGACATGATCGATGCCGACATCCCGAAGAG
GCTACCGCAGCACCCAGTCGCGAGTGCCCTCGGGATTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig921:216297..216536-

>mRNA_A-nodosum_M_contig921.10.1 ID=mRNA_A-nodosum_M_contig921.10.1|Name=mRNA_A-nodosum_M_contig921.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig921:216297..216536- (Ascophyllum nodosum dioecious)
ATGGGGGATCAGCACGGATTCTTTCAAAACATCAAATCGGTGCAACTGGA
GGAGACAAAGAAGGTGGAATCACAATGCATCCGTGACGAGGAAGGAAGAC
TGTTGCGCGACAAAGCGCGTATTCGCGAGAGGTGGGTGAGATTCTTCCGC
TCACTGCTGAACTCTAAATCCGACATGATCGATGCCGACATCCCGAAGAG
GCTACCGCAGCACCCAGTCGCGAGTGCCCTCGGGATTGAG
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