prot_A-nodosum_M_contig921.10.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig921.10.1
Unique Nameprot_A-nodosum_M_contig921.10.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length80
Homology
BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Match: A0A6H5K9P7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.090e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    2 GDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFRSLLNSKSDMID---ADIPKRLP 69
            GDQ GF++++K + +E  K   SQ I+DE+G++LRD   IR+RW R+F +LLN K   ID   AD  KR P
Sbjct:  160 GDQAGFYRHLKMIDVE-GKTFTSQNIKDEDGKVLRDPTCIRQRWARWFHTLLNIKPPTIDLHAADKVKRWP 229          
BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Match: A0A6H5L949_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L949_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-7
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    2 GDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFRSLLNSKSDMID 61
            GDQ GF++++K + +E  +   SQ I+DE+G++ RD A IR+R  R+F  LLN+KS  ID
Sbjct:   93 GDQAGFYRHLKMIDVERKRSFTSQNIKDEDGKVPRDPAFIRQRCARWFHKLLNTKSPTID 152          
BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Match: A0A6H5KGW3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.760e-5
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 0
Query:    2 GDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFRSLL 53
            GDQ GF++++K + +E    + SQ I+D++G++LRD   IR+RW R+F  LL
Sbjct:   50 GDQAGFYRHLKMIDVEGKSSLNSQNIKDKDGKVLRDPTFIRQRWARWFHKLL 101          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig921.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9P7_9PHAE9.090e-847.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L949_9PHAE1.130e-746.67Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KGW3_9PHAE1.760e-544.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig921contigA-nodosum_M_contig921:216297..216536 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig921.10.1mRNA_A-nodosum_M_contig921.10.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig921 216297..216536 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig921.10.1 ID=prot_A-nodosum_M_contig921.10.1|Name=mRNA_A-nodosum_M_contig921.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
MGDQHGFFQNIKSVQLEETKKVESQCIRDEEGRLLRDKARIRERWVRFFR
SLLNSKSDMIDADIPKRLPQHPVASALGIE
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