mRNA_A-nodosum_M_contig920.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 421 bits (1081), Expect = 1.690e-134 Identity = 235/487 (48.25%), Postives = 289/487 (59.34%), Query Frame = 3
Query: 90 TRITTLLTCFAPTVLLAAAPPGSLR---RPQEDTKATVIAPRRLPTSDLEPAVDEEGYYAHLGCYMDKEDDRVLGM-------KLVRDDMTAELCHEYCNVRGAFFMATQYGNECFCSEEGDLDYDRHSIGVCDMSCAGDDSERCGGFYAFDLYELVWPDTPTDLEYMDCYADDAEDSIMSNMYASDDMTSAVCRDHCKENNALYYATQFGNECWCGTSDVFADYEKHGKGTCHIRCAGDTSTACGGLYAFSLYRF---------IDESPEPTSEPASD---STEEVGSVNFENTYPFDG----TTFSGDGTYYGETSSGNCAIMP-IPSMYSGMIPVALNAGQYGGSEMCGACIEGEGSGNGAGSDPITGTFKAYVMDKCPECSTGDLDFSKSGDGRWDISWKFVACPGSDKPSFIFEGSHEYFWKIQPRGTKTPVTELTVDGASGTKTDDNFFEIPG-APYPLYGAQTVKTTTMLGKTATQEVSL 1466
T T+++T A +L+ A P SL R E A A R L S E Y HLGCY+D GM LV D MT ELC++ C+ GAFFM TQ GNEC CS E DLDY GVCD CAGD +E CGG DLY+L D P EY C++D E +M +M + MT+ +CRDHC+ ++A+YYATQ+GNEC+CG S DYE HG GTCH+ CAGD+ +ACGG +AFSL++F + + EP SEPA + ST E+ P G TTF GDGTYY S+GNC PS+YSGM PVALNA QYG S MCG+C+EGEG+G G G +PI GTFK ++MDKCPEC GDLDF DGRWDI W+FVACPG ++ SF Y+WKIQPRGT TPV LT+ G + +TDDN FE+ + P Y Q V TTT+ G E+S+
Sbjct: 59 TAATSIMTRLAAALLVCATPVASLETSLRGAEVAAAAGGARRGLSGSSYES-------YEHLGCYVDN------GMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSFESGVCDEPCAGDSTETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEPAPEPVVSTPAPSMSEAESKTPISGGVYGTTFEGDGTYYTGISAGNCGFFDDFPSIYSGMTPVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPG-EEVSFKVVEMTPYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 1.560e-126 Identity = 224/512 (43.75%), Postives = 281/512 (54.88%), Query Frame = 3
Query: 108 LTCFAPTVLLAAAPPGSLRRPQEDTKATVIAPRR-LPTSDLEPAVDEEGYYAHLGCYMDKEDDRVLGM-------KLVRDDMTAELCHEYCNVRGAFFMATQYGNECFCSEEGDLDYDRHSIGVCDMSCAGDDSERCGGFYAFDLYELVWPDTPTDLEYMDCYADDAEDSIMSNMYASDDMTSAVCRDHCKENNALYYATQFGNECWCGTSDVFADYEKHGKGTCHIRCAGDTSTACGGLYAFSLYRF-IDESPEPTSEPASD-----------------------------------------------STEEVGSVNFENTYPFDGTTFSGDGTYYGETSSGNCAIMP-IPSMYSGMIPVALNAGQYGGSEMCGACIEGEGSGNGAGSDPITGTFKAYVMDKCPECSTGDLDFSKSGDGRWDISWKFVACPGSDKPSFIFEGSHEYFWKIQPRGTKTPVTELTVDGASGTKTDDNFFEI--PGAPYPLYGAQTVKTTTMLGKTATQEVSL 1466
+T A +L+ A P SL + + RR L S E Y H+GCY+D GM LV + MT E+C++ C+ G+FFM TQ GNEC CS E DL Y GVCD+ CAGD E CGG DLY+L TP EY+ C++D E +M +M + MT+ +CRDHC+ ++A+YYATQ+GNEC+CG S DYE HG GTCH+ C GD+ +ACGG +AFSLY+F D PEP ++ S+ G Y G TF+G+GTYY TS+GNC PS+Y GM PVALN QYG S MCGAC+EGEG+G G+GSDP+ GTFK ++MDKCPECS GDLDF DGRWDI WKFV CP ++ SF E EY+WKIQPRGT TPV LT+ G + +TDDN FE+ P P Y Q V TTT+ G E+S+
Sbjct: 1 MTRLAAALLVCATPVASLETSLRGAEVSAGGARRGLSGSSYEA-------YEHVGCYVDN------GMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEPDVPESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGGGGDVSGGEY---GITFNGEGTYYTGTSAGNCGFFDDFPSIYDGMTPVALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGD-PWYEPQMVVTTTVGGVVEETEMSV 494
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 259 bits (662), Expect = 1.400e-68 Identity = 117/220 (53.18%), Postives = 156/220 (70.91%), Query Frame = 3
Query: 219 SDLEPAVDEEGYYAHLGCYMDKEDDRVLGMK-LVRDDMTAELCHEYCNVRGAFFMATQYGNECFCSEEGDLDYDRHS-IGVCDMSCAGDDSERCGGFYAFDLYELVWPDTPTDLEYMDCYADDAEDSIMSNMYASDDMTSAVCRDHCKENNALYYATQFGNECWCGTSDVFADYEKHGKGTCHIRCAGDTSTACGGLYAFSLYRFIDESPEPTSEPASDS 872
S+ EP G Y H+GC+ D + DRVL L+ DMTAELC+E C+ +GA +MATQ+G EC+CS +G LDYDRH GVCD C GD+SE CGG ++F+LY L W P D EY+ CY D+ D ++S+M +SDDMT+AVCR+HC + +A YY TQF +ECWCGTSD ADYE+HG+G CH+ C+GD + ACGG A+SL+++ + PT+ P +DS
Sbjct: 1134 SESEPG-GRPGAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAPVTDS 1352
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 233 bits (593), Expect = 2.040e-66 Identity = 110/183 (60.11%), Postives = 134/183 (73.22%), Query Frame = 3
Query: 921 GTTFSGDGTYYGETSSGNCAIMP-IPSMYSGMIPVALNAGQYGGSEMCGACIEGEGSGNGAGSDPITGTFKAYVMDKCPECSTGDLDFSKSGDGRWDISWKFVACPGSDKPSFIFEGSHEYFWKIQPRGTKTPVTELTVDGASGTKTDDNFFEIPGAPYPLYGAQTVKTTTMLGKTATQEVSL 1466
G +SG+GTYYG T++G C+ +P MY GMIPVALNA QYG S MCGAC+EG SG+G+G++PI TFKA++ DKCPEC GDLDFS SGDGRWDI WKFVACPG ++ SF+ ++ Y+WK+QPRGT TPV LTVDG S +T DN FE+ GAQTV TTT+ G T T EVS+
Sbjct: 105 GEEYSGEGTYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPG-EETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI) HSP 1 Score: 220 bits (560), Expect = 1.260e-62 Identity = 107/188 (56.91%), Postives = 129/188 (68.62%), Query Frame = 3
Query: 912 PFDGTTFSGDGTYYGET--SSGNCAIM-PIPSMYSGMIPVALNAGQYGGSEMCGACIEGEGSGNGAGSDPITGTFKAYVMDKCPECSTGDLDFSKSGDGRWDISWKFVACPGSDKPSFIFEGSHEYFWKIQPRGTKTPVTELTVDGASGTKTDDNFFEIPGAPYPLYGAQTVKTTTMLGKTATQEVSL 1466
P+D FSGD TYYG T GNCAI P+P MY GMIPVALN QY S MCGACIEGEG G G G DP+ G FKAYV D+CPEC GDLDF+ GDGRWDISW FV C G +F+FEGS+E++WKIQPRG ++PV L ++G +++DNFF + G P+ G Q V T T+L K Q V++
Sbjct: 36 PYD-EQFSGDATYYGVTPDGDGNCAIRSPLPEMYDGMIPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFD--GEQEVHTKTVLNKRRRQSVAM 220
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 239 bits (609), Expect = 4.650e-62 Identity = 111/217 (51.15%), Postives = 149/217 (68.66%), Query Frame = 3
Query: 237 VDEEG--YYAHLGC--YMDKEDDRVLGMKLVRDDMTAELCHEYCNVRGAFFMATQYGNECFCSEEGDLDYDRHS-IGVCDMSCAGDDSERCGGFYAFDLYELVWPDTPTDLEYMDCYADDAEDSIMSNMYASDDMTSAVCRDHCKENNALYYATQFGNECWCGTSDVFADYEKHGKGTCHIRCAGDTSTACGGLYAFSLYRFIDESPEPTSEPASDS 872
VD EG Y+A L C ++ K+ + L+ DMTAELC+E C+ +GA +MATQ+G EC+CS +G LDYDRH GVCD C GD+SE CGG ++F+LY L W P D EY+ CYAD D ++ +M +SD+MT+ VCR+HC + +A YY TQF +ECWCGTSD ADYE+HG+G CH+ C+GD + ACGG A+SL++ + PT P +DS
Sbjct: 790 VDGEGCLYFAGLACLPHLAKQPLHHVRSGLISSDMTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCIGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFKHDNGGKTPTMAPVTDS 1006
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR) HSP 1 Score: 205 bits (521), Expect = 2.790e-56 Identity = 99/183 (54.10%), Postives = 130/183 (71.04%), Query Frame = 3
Query: 927 TFSGDGTYYGETSSGNCAIM-PIPSMYSGMIPVALNAGQYGGSEMCGACIEGEGSGNGAGSDPITGTFKAYVMDKCPECSTGDLDFSKSGDGRWDISWKFVACPGSDKPSFIFEGSHEYFWKIQPRGTKTPVTELTVDGASGTKTDDNFFEIP---GAPYPLYGAQTVKTTTMLGKTATQEVS 1463
TF GDGTYYG T+ GNCAI P+P MYSGM+PVA+N QY S+ CGAC+ G G G+G++P+ GTFKAYV D+CPEC GD+D SKSGDGRW + W+F+ CPG + F+FEGS+ ++ K+QPRG KTPVT +V+G GTKT DNF+ + G YPL TV+ T+L + T +++
Sbjct: 23 TFFGDGTYYGYTTRGNCAIRSPLPGMYSGMVPVAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPG-EWVFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGFRYPL----TVQMRTVLNEWITVKLA 200
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR) HSP 1 Score: 203 bits (516), Expect = 1.480e-55 Identity = 103/204 (50.49%), Postives = 136/204 (66.67%), Query Frame = 3
Query: 930 FSGDGTYYGETSSGNCAIM-PIPSMYSGMIPVALNAGQYGGSEMCGACIEGEGSGNGAGSDPITGTFKAYVMDKCPECSTGDLDFSKSGDGRWDISWKFVACPGSDKPSFIFEGSHEYFWKIQPRGTKTPVTELTVDGASGTKTDDNFFEIP---GAPYPLYGAQTVKTTTMLGKTATQEVSL*ND---FFVLGRVKTRANSPP 1520
F G+GTYYG T+ GNCAI P+PSMY+GM+PVA+N QY S CGAC++ G G G+G++PI GTFKAYV D+CPEC GD+D SK GDGRW + WKF+ CPG + F+FEGS+ Y+ K+QPRG KTPV+ L+V G GTKT DNF+ + G +P+ TV+ T+L + T +++ F +G RA S P
Sbjct: 29 FHGEGTYYGYTTRGNCAIRSPMPSMYNGMLPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPG-EFVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIVQNGGGFRFPI----TVQMRTVLNEWITVQLAYSRPDGAVFPVGYTTGRARSQP 227
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 217 bits (552), Expect = 2.170e-55 Identity = 97/210 (46.19%), Postives = 141/210 (67.14%), Query Frame = 3
Query: 201 PRRLPTSDLEPAVDEEGYYAHLGCYMDKEDDRVLGMKLVRDDMTAELCHEYCNVRGAFFMATQYGNECFCSEEGDLDYDRHSIGVCDMSCAGDDSERCGGFYAFDLYELVWPDTPTDLEYMDCYADDAEDSIMSN-MYASDDMTSAVCRDHCKENNALYYATQFGNECWCGTSDVFADYEKHGKGTCHIRCAGDTSTACGGLYAFSLYRF 827
P P ++ + + Y+++GC+ D ++DRV MT +C EYC R A +MATQYG EC+CS + +++YDRHS GVCD +C GD ++ CGGF AFDLY++ P PT EY+ C+ADD ED ++ + + DMT AVCR +C+E +A +YATQ+G+ECWCG S+ DY++HG+G+C C+GD + ACGG AF+L++F
Sbjct: 415 PVAAPVYEMPVTMPVDEGYSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF 624
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 206 bits (524), Expect = 2.210e-54 Identity = 93/195 (47.69%), Postives = 132/195 (67.69%), Query Frame = 3
Query: 243 EEGYYAHLGCYMDKEDDRVLGMKLVRDDMTAELCHEYCNVRGAFFMATQYGNECFCSEEGDLDYDRHSIGVCDMSCAGDDSERCGGFYAFDLYELVWPDTPTDLEYMDCYADDAEDSIMSN-MYASDDMTSAVCRDHCKENNALYYATQFGNECWCGTSDVFADYEKHGKGTCHIRCAGDTSTACGGLYAFSLYR 824
EEGY +++GC+ D +DDRV MT +C EYC R A FMATQ+G EC+CS + +++YDRHS GVCD C G+ ++ CGGF AFDLY++ P PT EY+ C+ADD ED ++ + + DMT VCR +C+E +A +YATQ+G+ECWCG S+ DY++HG+G+C C+GD + ACG + +Y+
Sbjct: 8 EEGY-SYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCECGGEATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYK 201 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig920.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig920.3.1 >prot_A-nodosum_M_contig920.3.1 ID=prot_A-nodosum_M_contig920.3.1|Name=mRNA_A-nodosum_M_contig920.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=463bp MTMTRITTLLTCFAPTVLLAAAPPGSLRRPQEDTKATVIAPRRLPTSDLEback to top mRNA from alignment at A-nodosum_M_contig920:162458..174326- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig920.3.1 ID=mRNA_A-nodosum_M_contig920.3.1|Name=mRNA_A-nodosum_M_contig920.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11869bp|location=Sequence derived from alignment at A-nodosum_M_contig920:162458..174326- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig920:162458..174326- >mRNA_A-nodosum_M_contig920.3.1 ID=mRNA_A-nodosum_M_contig920.3.1|Name=mRNA_A-nodosum_M_contig920.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1389bp|location=Sequence derived from alignment at A-nodosum_M_contig920:162458..174326- (Ascophyllum nodosum dioecious)back to top |