mRNA_A-nodosum_M_contig9144.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9144.6.1
Unique NamemRNA_A-nodosum_M_contig9144.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9144.6.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.090e-21
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 VPSIRMVNEAELAALAVGSTTGVLVDIGESGFSVTPIFGGCPIAPGARWEACGGADLTEYMDSMLHSRANEAFNQM 228
            VP+IRMVNEA+LAALAVG   GV+VDIGESG SVTPIF G P+ P  R E CGG D+T+++D ML SR NE FNQM
Sbjct:  784 VPAIRMVNEAQLAALAVGVKVGVIVDIGESGVSVTPIFDGFPVPPAVRSECCGGGDVTKFLDYMLLSRTNEHFNQM 859
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BLAST of mRNA_A-nodosum_M_contig9144.6.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.180e-21
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 VPSIRMVNEAELAALAVGSTTGVLVDIGESGFSVTPIFGGCPIAPGARWEACGGADLTEYMDSMLHSRANEAFNQM 228
            VP+IRMVNEA+LAALAVG   GV+VDIGESG SVTPIF G P+ P  R E CGG D+T+++D ML SR NE FNQM
Sbjct: 1409 VPAIRMVNEAQLAALAVGVKVGVIVDIGESGVSVTPIFDGFPVPPAVRSECCGGGDVTKFLDYMLLSRTNEHFNQM 1484
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BLAST of mRNA_A-nodosum_M_contig9144.6.1 vs. uniprot
Match: D8LK63_ECTSI (Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK63_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.050e-6
Identity = 27/67 (40.30%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    4 PSIRMVNEAELAALAVGSTTGVLVDIGESGFSVTPIFGGCPIAPGARWEACGGADLTEYMDSMLHSR 204
            P++ M  +  LA  A G T+G++VDIGESG  V PIF G  +  G RW   GG D+T ++ ++++++
Sbjct:  462 PAVHMALQPVLALYACGPTSGLVVDIGESGTQVAPIFDGFVLETGIRWVGLGGKDITRHLAALVNAK 528
[Close]
BLAST of mRNA_A-nodosum_M_contig9144.6.1 vs. uniprot
Match: A0A6H5JMD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.730e-6
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    4 PSIRMVNEAELAALAVGSTTGVLVDIGESGFSVTPIFGGCPIAPGARWEACGGADLTEYMDSMLHSR 204
            P++ M  +  L   A G T+G++VDIGESG   TPIF G  +  G RW   GG D+T ++ ++++++
Sbjct:  139 PAVHMALQPVLTLYACGPTSGLVVDIGESGTQATPIFDGFVVETGIRWVGLGGKDITRHLAALVNAK 205
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9144.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JDL2_9PHAE1.090e-2168.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHM1_ECTSI1.180e-2168.42TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
D8LK63_ECTSI2.050e-640.30Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JMD8_9PHAE2.730e-638.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9144contigA-nodosum_M_contig9144:8995..9833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHM1
PFAMsActin,BRCT,Filamin,Ist1,PARP,PARP_reg,VIT,VWA_3
Model size839
Max annot lvl2759|Eukaryota
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.92e-22
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
EC2.4.2.30
DescriptionATP binding
Cds size249
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870370.603667-UTR-A-nodosum_M_contig9144:8994..95691680870370.603667-UTR-A-nodosum_M_contig9144:8994..9569Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9144 8995..9569 -
1680870370.6290014-UTR-A-nodosum_M_contig9144:9818..98331680870370.6290014-UTR-A-nodosum_M_contig9144:9818..9833Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9144 9819..9833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870370.6162968-CDS-A-nodosum_M_contig9144:9569..98181680870370.6162968-CDS-A-nodosum_M_contig9144:9569..9818Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9144 9570..9818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9144.6.1prot_A-nodosum_M_contig9144.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9144 9570..9818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9144.6.1

>prot_A-nodosum_M_contig9144.6.1 ID=prot_A-nodosum_M_contig9144.6.1|Name=mRNA_A-nodosum_M_contig9144.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MVNEAELAALAVGSTTGVLVDIGESGFSVTPIFGGCPIAPGARWEACGGA
DLTEYMDSMLHSRANEAFNQMVRVRVKSAVTK*
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mRNA from alignment at A-nodosum_M_contig9144:8995..9833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9144.6.1 ID=mRNA_A-nodosum_M_contig9144.6.1|Name=mRNA_A-nodosum_M_contig9144.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=839bp|location=Sequence derived from alignment at A-nodosum_M_contig9144:8995..9833- (Ascophyllum nodosum dioecious)
GTGCCTTCGATCCGCATGGTCAACGAGGCGGAGCTGGCGGCGCTGGCAGT
GGGTTCGACAACGGGTGTGCTGGTAGACATCGGAGAGTCGGGGTTCTCCG
TGACGCCAATCTTCGGCGGGTGTCCGATTGCCCCCGGGGCGCGGTGGGAA
GCATGTGGAGGTGCTGACCTTACCGAGTACATGGACTCGATGCTACACAG
CCGGGCTAACGAGGCGTTCAACCAGATGGTACGAGTGCGGGTGAAAAGTG
CTGTGACGAAGTGACTGCCGGCCGACGTTCGTCTTTGTTGCTTCCCACCG
ATTACGAACTCACACTCACACTCTTCATTGCATGATAAATTGCTTCGCTT
TTTTAGCATACTGTCCTTGCAACTTGGAAGAAGCTACGGGTGATACAATC
GGTCAGCCATAGACCTACTATCAAATGCTCATCCTGCTATTAATAGTGAC
CTCAAATAGGTACGGAGGCCAAAGGGGCATGTCACGTTGTCATCCCGCTA
CTCAAAGCACGGGATAAAAAACAGCTCGTTAGATACAACCAGCGGAGAGG
CAACTCAAATCAAATCCTATTCGTGTTATTAATACGACAATTTATTCGGG
ATACGAACTGCAACAATAGAGCTTGTACTGTCTGGAATGAACATTGCCAA
GTTCCACAAGAAGAACTACCAGGTACAAGCTACAGAGAGAACTGTCGAGT
GTACTGATTATTTTGCTCAATAATAGCCACAAACCGACCAGACCAGAGAA
AATTATGCAACACTTACAAGGAAAGACACCGACCGATGTCAAATAAGTAC
TACACCGATCGTAACTGCGATTAGTCCGGGTTGATGTTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9144:8995..9833-

>mRNA_A-nodosum_M_contig9144.6.1 ID=mRNA_A-nodosum_M_contig9144.6.1|Name=mRNA_A-nodosum_M_contig9144.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9144:8995..9833- (Ascophyllum nodosum dioecious)
ATGGTCAACGAGGCGGAGCTGGCGGCGCTGGCAGTGGGTTCGACAACGGG
TGTGCTGGTAGACATCGGAGAGTCGGGGTTCTCCGTGACGCCAATCTTCG
GCGGGTGTCCGATTGCCCCCGGGGCGCGGTGGGAAGCATGTGGAGGTGCT
GACCTTACCGAGTACATGGACTCGATGCTACACAGCCGGGCTAACGAGGC
GTTCAACCAGATGGTACGAGTGCGGGTGAAAAGTGCTGTGACGAAGTGA
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