mRNA_A-nodosum_M_contig9094.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9094.1.1
Unique NamemRNA_A-nodosum_M_contig9094.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 75.1 bits (183), Expect = 4.870e-14
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 RQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVF 219
            RQ+D++ A+L  ++ EE+++E P+G+ D   +V RL+  +YGL  AG +W+KK   +L   GF R+ ADPCV+
Sbjct:  963 RQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVY 1035          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: L8H8A7_ACACA (GagPol, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8A7_ACACA)

HSP 1 Score: 70.9 bits (172), Expect = 4.770e-13
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKH 231
            Q+DV+ AFL AD++EE+Y++ P+G+ D   P+ V RLQK++YGL  A L W++     L   GF  ++ DPC++ R H
Sbjct:   90 QMDVDNAFLNADLSEEIYMQQPEGFEDQDHPDYVCRLQKSLYGLKQAPLEWNQTINAYLKKHGFWPTRLDPCIYVRVH 167          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A7M7QCF8_NASVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7QCF8_NASVI)

HSP 1 Score: 68.2 bits (165), Expect = 1.160e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 LDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVF 219
            LDVE AFL+ ++ E++Y++ P+GY D   P+ V RL+KA+YGL  +G +W+ K G  L   G +R + DPC++
Sbjct:   10 LDVETAFLQGELEEQVYIQQPEGYVDPHHPDLVCRLKKAIYGLKQSGRVWNVKLGSILNEMGLQRCEYDPCLY 82          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A6A3YME3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YME3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.240e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    7 LDVEMAFLEADVTEELYVELPDGY--RDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRK 228
            +DV+ AFL  D  EE+Y++ PDG+  +D+P +   L +A+YG   A   W+ K    L+A+GF RS ADPCV+ R+
Sbjct:  851 VDVDTAFLYGDAEEEIYMDQPDGFVDQDNPTKKCLLGQALYGTKQAARQWNNKLNQHLVAQGFRRSDADPCVYVRR 926          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A535FQJ1_9CHLR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FQJ1_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 7.810e-12
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKH 231
            QLD   AF  +++ EE+YVELPDGY+ +  +VGRL +A+YGL  + LLW K   G L   G +  + +PC+F   H
Sbjct:   80 QLDAVNAFPNSELDEEVYVELPDGYKLT-GKVGRLLRALYGLRRSPLLWQKLLSGALTELGLQAGKEEPCLFLTDH 154          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A2R6QI23_ACTCC (Endonuclease (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QI23_ACTCC)

HSP 1 Score: 67.8 bits (164), Expect = 1.770e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRK 228
            Q+DV+ AFL  D+TEE+Y++LP G   S NQV RL++A+YGL  A   W  KF   +   GF  S  D  +F R+
Sbjct:  422 QMDVKNAFLNGDLTEEVYMQLPPGSSSSSNQVCRLRRALYGLKQAPRAWYAKFSSTICDLGFSASAYDSALFTRQ 496          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A2R6QB41_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6QB41_9APHY)

HSP 1 Score: 64.7 bits (156), Expect = 2.570e-11
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDSPNQVG---RLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVF 219
            Q+DV  A+L+ D+ EE+Y++LP+G ++ P + G   RL+KA+YGL  +G  W KK    +   GFE+ QAD C++
Sbjct:   13 QVDVVGAYLQGDLDEEIYMKLPEGIKE-PGKEGWCWRLKKALYGLKQSGRQWKKKLDEAMAKLGFEKGQADECLY 86          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: Q849B9_ASTYP (Putative gag-pol polyprotein n=1 Tax=Aster yellows phytoplasma TaxID=35779 RepID=Q849B9_ASTYP)

HSP 1 Score: 66.2 bits (160), Expect = 4.050e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVF 219
            Q+D   AFL+ D+TEE+Y+  P+G    PN+V RL+K++YGL  A  +W+KK    L   G  +S  D CV+
Sbjct:  185 QMDAVSAFLQGDLTEEIYMNQPEGSHQEPNKVCRLRKSIYGLKQASRVWNKKLHSCLTKIGLAQSNFDSCVY 256          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A6L2K490_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K490_TANCI)

HSP 1 Score: 66.6 bits (161), Expect = 4.430e-11
Identity = 30/74 (40.54%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVF 219
            Q+DV+  FL   ++EE+Y+E P+G+ D   PNQV +L++++YGL  A   W+K+F  E+   GF +++ +PCV+
Sbjct:  127 QMDVKTTFLNGHLSEEVYIEQPEGFVDPKYPNQVCKLKRSIYGLKQASRQWNKRFDDEIKKFGFTQNRDEPCVY 200          
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 4.510e-11
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 QLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVF 219
            QLDV+ AFL AD+ E++Y+E P+G +   ++V +L KA+YGL  AG  W K   G LI  GF+   +D C++
Sbjct:  103 QLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIY 174          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9094.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C3AKI0_9AGAM4.870e-1442.47Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
L8H8A7_ACACA4.770e-1343.59GagPol, putative n=1 Tax=Acanthamoeba castellanii ... [more]
A0A7M7QCF8_NASVI1.160e-1243.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YME3_9STRA5.240e-1243.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A535FQJ1_9CHLR7.810e-1244.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6QI23_ACTCC1.770e-1145.33Endonuclease (Fragment) n=1 Tax=Actinidia chinensi... [more]
A0A2R6QB41_9APHY2.570e-1142.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q849B9_ASTYP4.050e-1143.06Putative gag-pol polyprotein n=1 Tax=Aster yellows... [more]
A0A6L2K490_TANCI4.430e-1140.54Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A8K1CTN1_PYTOL4.510e-1144.44Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9094contigA-nodosum_M_contig9094:6413..6643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7425.NV23659-PA
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size231
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size213
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870357.7596352-UTR-A-nodosum_M_contig9094:6412..64301680870357.7596352-UTR-A-nodosum_M_contig9094:6412..6430Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9094 6413..6430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870357.7711663-CDS-A-nodosum_M_contig9094:6430..66431680870357.7711663-CDS-A-nodosum_M_contig9094:6430..6643Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9094 6431..6643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9094.1.1prot_A-nodosum_M_contig9094.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9094 6431..6643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9094.1.1

>prot_A-nodosum_M_contig9094.1.1 ID=prot_A-nodosum_M_contig9094.1.1|Name=mRNA_A-nodosum_M_contig9094.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGG
ELIAKGFERSQADPCVFRRKH
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mRNA from alignment at A-nodosum_M_contig9094:6413..6643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9094.1.1 ID=mRNA_A-nodosum_M_contig9094.1.1|Name=mRNA_A-nodosum_M_contig9094.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig9094:6413..6643+ (Ascophyllum nodosum dioecious)
CGGCAGCTTGACGTAGAAATGGCGTTTCTCGAGGCGGATGTTACGGAGGA GCTCTACGTTGAGCTCCCCGACGGGTATCGTGACTCGCCGAACCAGGTTG GACGACTGCAGAAGGCCATGTACGGCCTGATGCACGCCGGACTACTGTGG TCGAAGAAGTTCGGCGGAGAGCTGATAGCGAAGGGGTTCGAGAGGTCCCA AGCCGATCCCTGCGTGTTCCGGCGGAAGCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9094:6413..6643+

>mRNA_A-nodosum_M_contig9094.1.1 ID=mRNA_A-nodosum_M_contig9094.1.1|Name=mRNA_A-nodosum_M_contig9094.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig9094:6413..6643+ (Ascophyllum nodosum dioecious)
ATGGCGTTTCTCGAGGCGGATGTTACGGAGGAGCTCTACGTTGAGCTCCC
CGACGGGTATCGTGACTCGCCGAACCAGGTTGGACGACTGCAGAAGGCCA
TGTACGGCCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCGGA
GAGCTGATAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGCGTGTT
CCGGCGGAAGCAT
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