mRNA_A-nodosum_M_contig908.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig908.4.1
Unique NamemRNA_A-nodosum_M_contig908.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 100 bits (248), Expect = 1.090e-23
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 PTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            P N+ E   M+ +PYREAVG LM+AA +TRPD+ YA  Q+  F +NPG  HW A KR+L+Y+  TK +GI Y G   S    +A+ DADF    D+RRS  G
Sbjct:   23 PVNDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSG---SHIDFTAYSDADFAGDVDTRRSTTG 121          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A075B126_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B126_ROZAC)

HSP 1 Score: 101 bits (251), Expect = 1.440e-23
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            +CPT   + EDM+VIPYR A+G+L++A+  TRPD+ YA +    +  NPG  HW  AKR+++YL  TKD G+ + G+      +  +VD+D+    D+RRSV G
Sbjct:   60 MCPTTPADIEDMKVIPYRSAIGSLLYASCGTRPDITYAVNIASKYLSNPGKEHWLLAKRIMRYLIGTKDYGLVFQGSQNKSFIVQGYVDSDWGSDIDTRRSVSG 163          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A438H3Q3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H3Q3_VITVI)

HSP 1 Score: 100 bits (249), Expect = 3.430e-23
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 CPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            CP NE E +DM   PY  A+G+LM+A   TRPD+AY    L  +  NPG  HW  AKRV+QYL RTKD  +TY  +  S  ++  + D+DF  C DS+RS  G
Sbjct:  175 CPKNELEKKDMERFPYASAIGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMQYLQRTKDYMLTYRRS--SHLEIVGYSDSDFARCLDSKRSTSG 275          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001A9748CE (secreted RxLR effector protein 161-like n=1 Tax=Bactrocera tryoni TaxID=59916 RepID=UPI001A9748CE)

HSP 1 Score: 98.6 bits (244), Expect = 3.720e-23
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            +CPT+ETE  +M  +PY +AVG L++A  +TRPD+++A + L  F+ NPG VHW   KRV++YL  T D GI Y   +     L+ + DAD+    D RRS  G
Sbjct:   21 MCPTDETEQHEMSKVPYMQAVGCLLFALQITRPDISFAVNLLSRFSTNPGKVHWVTVKRVMRYLKGTIDSGIVYSREVND---LTGYCDADWASDLDERRSTTG 121          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A438FEI6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEI6_VITVI)

HSP 1 Score: 102 bits (253), Expect = 4.900e-23
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 CPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            CP NE E +DM   PY  AVG+LM+A   TRPD+AY    L  +  NPG  HW  AKRV+QYL RTKD  +TY  +  S  ++  + D+DF  C DSRRS  G
Sbjct:  817 CPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMQYLQRTKDYMLTYRRS--SHLEIVGYSDSDFAGCLDSRRSTSG 917          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A8J2WCA4_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WCA4_9CRUS)

HSP 1 Score: 101 bits (251), Expect = 9.240e-23
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 PTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            PT  TE   M   PYR+AVG+LM+A  +TRPD+A+A  Q+  F+ NPGPVHW A KR+L YL  T   G+ + GT  S  +   + D+D+  CPD+RRS  G
Sbjct: 1160 PTTVTEQSSMSSTPYRQAVGSLMYAMIMTRPDIAFAVGQVSRFSVNPGPVHWEAVKRILSYLAGTPRHGLCFTGTDLS-NQFLGYSDSDYAGCPDTRRSTTG 1260          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.650e-22
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 PTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            P  + +   M+  PYR  +G+LM+ A  TRPD+A    +L  F +NPG  HW A  +V++YL +TKDVGITY G LG  TKL+A+ DAD+    D RRSV G
Sbjct:  299 PQTKEDKAKMKSRPYRSLIGSLMYLACETRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGLLG--TKLTAYSDADWAGNRDDRRSVSG 398          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A2N9F2S2_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F2S2_FAGSY)

HSP 1 Score: 99.4 bits (246), Expect = 4.240e-22
Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            +CPTN+TE E+M+ +PY +AVG+LM+A T TRPD+ YA   +  +  NPG  HW A KR+ +YL  TK++ + +G  L    ++  + DADF    D R+S  G
Sbjct:  611 MCPTNKTELEEMKAVPYAQAVGSLMYAMTSTRPDICYAVGLVSRYQSNPGKAHWQAVKRIFRYLQMTKNMKLCFG--LDEL-EIKGFTDADFARDTDDRKSTSG 711          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 94.4 bits (233), Expect = 4.480e-22
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYG-GTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            + P  + E E+M+ IPY+EAVGAL++ +T TRPD++YA  Q+  FN NPG  HW A KR+ +YL  T++ GI +     G   ++  + DAD    PD + S  G
Sbjct:    1 MSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDPDDQTSTSG 105          
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395)

HSP 1 Score: 95.9 bits (237), Expect = 4.650e-22
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   43 IPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
            IPYREAVG+L++AA VTRPD+ YA + +  F DN    HW A K++ +YL  T D GI YG + GS   L  + DAD+  CPD+RRS  G
Sbjct:   31 IPYREAVGSLLFAARVTRPDIEYAVNTVSQFVDNYNNTHWSAVKKIFRYLVGTIDCGIIYGAS-GSDESLVGYTDADYAGCPDTRRSRSG 119          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C9BC1AB1.090e-2349.02secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A075B126_ROZAC1.440e-2343.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438H3Q3_VITVI3.430e-2347.57Retrovirus-related Pol polyprotein from transposon... [more]
UPI001A9748CE3.720e-2344.23secreted RxLR effector protein 161-like n=1 Tax=Ba... [more]
A0A438FEI6_VITVI4.900e-2349.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J2WCA4_9CRUS9.240e-2348.04Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A225UK66_9STRA3.650e-2248.04Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A2N9F2S2_FAGSY4.240e-2243.27CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
UPI001E1BB9B04.480e-2241.90secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001D00A3954.650e-2251.11secreted RxLR effector protein 161-like n=2 Tax=Co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig908contigA-nodosum_M_contig908:247607..247918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size312
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-23
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size312
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870356.149784-CDS-A-nodosum_M_contig908:247606..2479181680870356.149784-CDS-A-nodosum_M_contig908:247606..247918Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig908 247607..247918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig908.4.1prot_A-nodosum_M_contig908.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig908 247607..247918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig908.4.1

>prot_A-nodosum_M_contig908.4.1 ID=prot_A-nodosum_M_contig908.4.1|Name=mRNA_A-nodosum_M_contig908.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPG
PVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRR
SVPG
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mRNA from alignment at A-nodosum_M_contig908:247607..247918-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig908.4.1 ID=mRNA_A-nodosum_M_contig908.4.1|Name=mRNA_A-nodosum_M_contig908.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig908:247607..247918- (Ascophyllum nodosum dioecious)
CTATGCCCCACAAACGAGACGGAGACGGAAGACATGCGTGTCATCCCATA TCGGGAGGCGGTAGGGGCCCTCATGTGGGCTGCGACCGTGACCCGCCCTG ATGTCGCGTACGCTGGTCATCAGCTAAAACACTTTAACGATAACCCGGGA CCAGTACACTGGGGGGCGGCTAAAAGGGTACTACAATATCTGTGGCGCAC GAAAGACGTTGGGATCACCTACGGAGGAACGCTGGGGTCGTGTACAAAAC TGTCGGCATGGGTGGACGCCGATTTCACCCCTTGCCCAGACTCTCGGCGT TCGGTTCCAGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig908:247607..247918-

>mRNA_A-nodosum_M_contig908.4.1 ID=mRNA_A-nodosum_M_contig908.4.1|Name=mRNA_A-nodosum_M_contig908.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig908:247607..247918- (Ascophyllum nodosum dioecious)
CTATGCCCCACAAACGAGACGGAGACGGAAGACATGCGTGTCATCCCATA
TCGGGAGGCGGTAGGGGCCCTCATGTGGGCTGCGACCGTGACCCGCCCTG
ATGTCGCGTACGCTGGTCATCAGCTAAAACACTTTAACGATAACCCGGGA
CCAGTACACTGGGGGGCGGCTAAAAGGGTACTACAATATCTGTGGCGCAC
GAAAGACGTTGGGATCACCTACGGAGGAACGCTGGGGTCGTGTACAAAAC
TGTCGGCATGGGTGGACGCCGATTTCACCCCTTGCCCAGACTCTCGGCGT
TCGGTTCCAGGC
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