mRNA_A-nodosum_M_contig908.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB) HSP 1 Score: 100 bits (248), Expect = 1.090e-23 Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 7 PTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
P N+ E M+ +PYREAVG LM+AA +TRPD+ YA Q+ F +NPG HW A KR+L+Y+ TK +GI Y G S +A+ DADF D+RRS G
Sbjct: 23 PVNDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSG---SHIDFTAYSDADFAGDVDTRRSTTG 121
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A075B126_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B126_ROZAC) HSP 1 Score: 101 bits (251), Expect = 1.440e-23 Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
+CPT + EDM+VIPYR A+G+L++A+ TRPD+ YA + + NPG HW AKR+++YL TKD G+ + G+ + +VD+D+ D+RRSV G
Sbjct: 60 MCPTTPADIEDMKVIPYRSAIGSLLYASCGTRPDITYAVNIASKYLSNPGKEHWLLAKRIMRYLIGTKDYGLVFQGSQNKSFIVQGYVDSDWGSDIDTRRSVSG 163
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A438H3Q3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H3Q3_VITVI) HSP 1 Score: 100 bits (249), Expect = 3.430e-23 Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 4 CPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
CP NE E +DM PY A+G+LM+A TRPD+AY L + NPG HW AKRV+QYL RTKD +TY + S ++ + D+DF C DS+RS G
Sbjct: 175 CPKNELEKKDMERFPYASAIGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMQYLQRTKDYMLTYRRS--SHLEIVGYSDSDFARCLDSKRSTSG 275
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001A9748CE (secreted RxLR effector protein 161-like n=1 Tax=Bactrocera tryoni TaxID=59916 RepID=UPI001A9748CE) HSP 1 Score: 98.6 bits (244), Expect = 3.720e-23 Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
+CPT+ETE +M +PY +AVG L++A +TRPD+++A + L F+ NPG VHW KRV++YL T D GI Y + L+ + DAD+ D RRS G
Sbjct: 21 MCPTDETEQHEMSKVPYMQAVGCLLFALQITRPDISFAVNLLSRFSTNPGKVHWVTVKRVMRYLKGTIDSGIVYSREVND---LTGYCDADWASDLDERRSTTG 121
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A438FEI6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEI6_VITVI) HSP 1 Score: 102 bits (253), Expect = 4.900e-23 Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 4 CPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
CP NE E +DM PY AVG+LM+A TRPD+AY L + NPG HW AKRV+QYL RTKD +TY + S ++ + D+DF C DSRRS G
Sbjct: 817 CPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMQYLQRTKDYMLTYRRS--SHLEIVGYSDSDFAGCLDSRRSTSG 917
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A8J2WCA4_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WCA4_9CRUS) HSP 1 Score: 101 bits (251), Expect = 9.240e-23 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 7 PTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
PT TE M PYR+AVG+LM+A +TRPD+A+A Q+ F+ NPGPVHW A KR+L YL T G+ + GT S + + D+D+ CPD+RRS G
Sbjct: 1160 PTTVTEQSSMSSTPYRQAVGSLMYAMIMTRPDIAFAVGQVSRFSVNPGPVHWEAVKRILSYLAGTPRHGLCFTGTDLS-NQFLGYSDSDYAGCPDTRRSTTG 1260
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.650e-22 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 7 PTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
P + + M+ PYR +G+LM+ A TRPD+A +L F +NPG HW A +V++YL +TKDVGITY G LG TKL+A+ DAD+ D RRSV G
Sbjct: 299 PQTKEDKAKMKSRPYRSLIGSLMYLACETRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGLLG--TKLTAYSDADWAGNRDDRRSVSG 398
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: A0A2N9F2S2_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F2S2_FAGSY) HSP 1 Score: 99.4 bits (246), Expect = 4.240e-22 Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
+CPTN+TE E+M+ +PY +AVG+LM+A T TRPD+ YA + + NPG HW A KR+ +YL TK++ + +G L ++ + DADF D R+S G
Sbjct: 611 MCPTNKTELEEMKAVPYAQAVGSLMYAMTSTRPDICYAVGLVSRYQSNPGKAHWQAVKRIFRYLQMTKNMKLCFG--LDEL-EIKGFTDADFARDTDDRKSTSG 711
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0) HSP 1 Score: 94.4 bits (233), Expect = 4.480e-22 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 1 LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYG-GTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
+ P + E E+M+ IPY+EAVGAL++ +T TRPD++YA Q+ FN NPG HW A KR+ +YL T++ GI + G ++ + DAD PD + S G
Sbjct: 1 MSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDPDDQTSTSG 105
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395) HSP 1 Score: 95.9 bits (237), Expect = 4.650e-22 Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1
Query: 43 IPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGPVHWGAAKRVLQYLWRTKDVGITYGGTLGSCTKLSAWVDADFTPCPDSRRSVPG 312
IPYREAVG+L++AA VTRPD+ YA + + F DN HW A K++ +YL T D GI YG + GS L + DAD+ CPD+RRS G
Sbjct: 31 IPYREAVGSLLFAARVTRPDIEYAVNTVSQFVDNYNNTHWSAVKKIFRYLVGTIDCGIIYGAS-GSDESLVGYTDADYAGCPDTRRSRSG 119 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig908.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig908.4.1 >prot_A-nodosum_M_contig908.4.1 ID=prot_A-nodosum_M_contig908.4.1|Name=mRNA_A-nodosum_M_contig908.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp LCPTNETETEDMRVIPYREAVGALMWAATVTRPDVAYAGHQLKHFNDNPGback to top mRNA from alignment at A-nodosum_M_contig908:247607..247918- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig908.4.1 ID=mRNA_A-nodosum_M_contig908.4.1|Name=mRNA_A-nodosum_M_contig908.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig908:247607..247918- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig908:247607..247918- >mRNA_A-nodosum_M_contig908.4.1 ID=mRNA_A-nodosum_M_contig908.4.1|Name=mRNA_A-nodosum_M_contig908.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig908:247607..247918- (Ascophyllum nodosum dioecious)back to top |