mRNA_A-nodosum_M_contig9055.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9055.2.1
Unique NamemRNA_A-nodosum_M_contig9055.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9055.2.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.110e-24
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 GLPQGNFRAQLDDFNEGKLLRISADALVADAPDSADTTGFLVRDEDFWLEAKGFRNP 171
            GLPQGNFRAQ DDFNEGKLLRIS+DALVA+A   A TTGFLVRD DFWLEAKGFRNP
Sbjct:  236 GLPQGNFRAQFDDFNEGKLLRISSDALVAEATADASTTGFLVRDTDFWLEAKGFRNP 292
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9055.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE5.110e-2485.96PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9055contigA-nodosum_M_contig9055:14487..15114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870355.2710018-CDS-A-nodosum_M_contig9055:14488..145151680870355.2710018-CDS-A-nodosum_M_contig9055:14488..14515Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9055 14489..14515 -
1680870355.282604-CDS-A-nodosum_M_contig9055:14970..151141680870355.282604-CDS-A-nodosum_M_contig9055:14970..15114Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9055 14971..15114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9055.2.1prot_A-nodosum_M_contig9055.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9055 14489..15114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9055.2.1

>prot_A-nodosum_M_contig9055.2.1 ID=prot_A-nodosum_M_contig9055.2.1|Name=mRNA_A-nodosum_M_contig9055.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
GLPQGNFRAQLDDFNEGKLLRISADALVADAPDSADTTGFLVRDEDFWLE
AKGFRNP
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mRNA from alignment at A-nodosum_M_contig9055:14487..15114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9055.2.1 ID=mRNA_A-nodosum_M_contig9055.2.1|Name=mRNA_A-nodosum_M_contig9055.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=628bp|location=Sequence derived from alignment at A-nodosum_M_contig9055:14487..15114- (Ascophyllum nodosum dioecious)
GGCCTTCCACAGGGCAACTTCCGTGCTCAGCTTGACGACTTCAACGAGGG
CAAGCTGCTGCGAATTTCTGCCGATGCCCTCGTGGCGGACGCCCCCGATT
CAGCGGATACGACAGGCTTTTTAGTCCGTGACGAGGACTTCTGGGTGAGG
AAGGCTTCAAGGAATACAGCACTCATGTTGGCCATAAAATAATAACACTC
TTTTGTTGTTGATAACCTATTACGCTCCCGTTTGGTCTTGAGTCTTGACT
GAGCCTTGCTGTTTGTTTTTGTAATGATATTTTATACTTTTATAGCCTAA
GTCGTTCAGGGTGCAGTCACTTGAGATCTTGCGGAATTTATGCATGATAT
TAATCTTGTTCTAAACGTTTTTTGTCACATTGGGCCTTTTTGCCCGTGTT
CAATTTAATTTAATGTTTGTTGTTGTTTCATCTCTTTTCATCGAAATGAA
AAGTCCTCTTGTTAAGTATTGTAGTTGTTCCCCTTTGAAAATAATCTTGA
TGCGTTGGATATGTTTTTGACTTTTTTTACGTTTCTCTCTCTACTGGCAA
ACCATCAAACCGCCTTGTCCGTGACATTGACCATCACCATCACCATCAGC
TCGAGGCGAAGGGTTTCCGCAACCCTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9055:14487..15114-

>mRNA_A-nodosum_M_contig9055.2.1 ID=mRNA_A-nodosum_M_contig9055.2.1|Name=mRNA_A-nodosum_M_contig9055.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig9055:14487..15114- (Ascophyllum nodosum dioecious)
GGCCTTCCACAGGGCAACTTCCGTGCTCAGCTTGACGACTTCAACGAGGG
CAAGCTGCTGCGAATTTCTGCCGATGCCCTCGTGGCGGACGCCCCCGATT
CAGCGGATACGACAGGCTTTTTAGTCCGTGACGAGGACTTCTGGCTCGAG
GCGAAGGGTTTCCGCAACCCT
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