mRNA_A-nodosum_M_contig845.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig845.12.1
Unique NamemRNA_A-nodosum_M_contig845.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: D7FP13_ECTSI (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP13_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.490e-58
Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDSNGIAQV AITGAKILR+LK+NGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQS+SASALVA
Sbjct:   67 QIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 169
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: A0A6H5KYF2_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF2_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.580e-58
Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDSNGIAQV AITGAKILR+LK+NGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQS+SASALVA
Sbjct:   69 QIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 171
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: A0A6H5KEX7_9PHAE (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 3.860e-58
Identity = 98/103 (95.15%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDSNGIAQV+AITG+KILR+LK+NGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKY+SSSASALVA
Sbjct:   86 QIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 188
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: A0A7S2V1V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1V2_9STRA)

HSP 1 Score: 179 bits (453), Expect = 9.270e-56
Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDSNGIAQV+++TG+K+LRLLK NGLA EIPEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRTNRKLA NWKY+SS+ASALVA
Sbjct:   49 QIGVILRDSNGIAQVRSVTGSKVLRLLKKNGLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTNRKLAPNWKYESSTASALVA 151
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: H3G9F0_PHYRM (Ribosomal_S13_N domain-containing protein n=30 Tax=Oomycota TaxID=4762 RepID=H3G9F0_PHYRM)

HSP 1 Score: 171 bits (432), Expect = 1.460e-52
Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDS+GIAQVK++TG+K+LRLLK NGLA E+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR NRKL+ NWKY+S++AS LVA
Sbjct:   49 QIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESATASTLVA 151
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: A0A6V1RUJ0_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUJ0_HETAK)

HSP 1 Score: 170 bits (430), Expect = 2.940e-52
Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGV+LRDSNGIAQVK++TG+KILR+LK NGLA EIPEDLYMLIKKAV VRKHLERNR+D D+KFRLILIESRIHRLARYYR NRKLA+NWKY+S +ASALVA
Sbjct:   49 QIGVMLRDSNGIAQVKSVTGSKILRILKKNGLAPEIPEDLYMLIKKAVQVRKHLERNRKDHDAKFRLILIESRIHRLARYYRLNRKLASNWKYESDTASALVA 151
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: A0A7S3GY39_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GY39_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.420e-51
Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDSNGIAQVK++TG KILR+LK +GLA  IPEDLYMLIKKAVAVRKHL+RN++DKDSKFRLILIESRIHRL+RYYRT RKL ANWKYQS++ASALVA
Sbjct:   49 QIGVILRDSNGIAQVKSVTGNKILRILKKSGLAPAIPEDLYMLIKKAVAVRKHLDRNKKDKDSKFRLILIESRIHRLSRYYRTARKLDANWKYQSATASALVA 151
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: B7FNY4_PHATC (Predicted protein n=3 Tax=Naviculales TaxID=38748 RepID=B7FNY4_PHATC)

HSP 1 Score: 166 bits (421), Expect = 6.900e-51
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALV 327
            QIGVILRDSNGIAQVK +TG K++R+LK+NGLA EIPEDLYMLIKKAV VRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL +NWKY+S++AS +V
Sbjct:   49 QIGVILRDSNGIAQVKFVTGQKVVRILKANGLAPEIPEDLYMLIKKAVQVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLPSNWKYESATASTIV 150
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: A0A4D9D0X7_9STRA (Ribosomal_S13_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0X7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.260e-50
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:   25 IGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            IGVILRDS GIAQVKA+TG+KILRLLK N LA EIPEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL  NWKY+SS+A+++VA
Sbjct:   86 IGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASIVA 187
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BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Match: F0YHH5_AURAN (40S ribosomal protein S13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH5_AURAN)

HSP 1 Score: 164 bits (414), Expect = 8.020e-50
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:   22 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 330
            QIGVILRDS+GI  VK++TG+KILRLLK NGLA EIPEDLYMLIKKAV+VRKH+ERNR DKDSKFRLILIESRIHRLARYYR+ RKL A+WKY+S++ASALVA
Sbjct:   49 QIGVILRDSSGIPAVKSVTGSKILRLLKKNGLAPEIPEDLYMLIKKAVSVRKHMERNRSDKDSKFRLILIESRIHRLARYYRSTRKLNASWKYESATASALVA 151
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig845.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP13_ECTSI1.490e-5896.12Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A6H5KYF2_9PHAE1.580e-5896.12Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A6H5KEX7_9PHAE3.860e-5895.15Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A7S2V1V2_9STRA9.270e-5689.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3G9F0_PHYRM1.460e-5284.47Ribosomal_S13_N domain-containing protein n=30 Tax... [more]
A0A6V1RUJ0_HETAK2.940e-5284.47Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3GY39_9STRA3.420e-5184.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
B7FNY4_PHATC6.900e-5182.35Predicted protein n=3 Tax=Naviculales TaxID=38748 ... [more]
A0A4D9D0X7_9STRA4.260e-5085.29Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
F0YHH5_AURAN8.020e-5082.5240S ribosomal protein S13 n=1 Tax=Aureococcus anop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig845contigA-nodosum_M_contig845:134417..135906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP13
Preferred nameRPS13
PFAMsRibosomal_S13_N,Ribosomal_S15
Model size333
Max annot lvl2759|Eukaryota
KEGG koko:K02953
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070181,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990932
Exons2
Evalue2.44e-59
EggNOG OGsCOG0184@1|root,KOG0400@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S15
Ec32 orthologEc-05_001800.1
Descriptionsmall ribosomal subunit rRNA binding
Cds size333
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870217.1132398-CDS-A-nodosum_M_contig845:134416..1345281680870217.1132398-CDS-A-nodosum_M_contig845:134416..134528Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig845 134417..134528 +
1680870217.2033315-CDS-A-nodosum_M_contig845:135685..1359061680870217.2033315-CDS-A-nodosum_M_contig845:135685..135906Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig845 135686..135906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig845.12.1prot_A-nodosum_M_contig845.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig845 134417..135906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig845.12.1

>prot_A-nodosum_M_contig845.12.1 ID=prot_A-nodosum_M_contig845.12.1|Name=mRNA_A-nodosum_M_contig845.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
MFPPLALQIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYML
IKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKY
QSSSASALVA*
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mRNA from alignment at A-nodosum_M_contig845:134417..135906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig845.12.1 ID=mRNA_A-nodosum_M_contig845.12.1|Name=mRNA_A-nodosum_M_contig845.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1490bp|location=Sequence derived from alignment at A-nodosum_M_contig845:134417..135906+ (Ascophyllum nodosum dioecious)
ATGTTTCCGCCGTTGGCGTTGCAGATCGGCGTGATCCTGCGTGACTCAAA
CGGCATCGCCCAGGTTAAGGCCATCACTGGCGCCAAGATCCTCCGCCTCC
TCAAGTCCAACGGTGAGTTGAGCAGTTACTTCTTGTTTGTACAAGCAACG
AGCAGCCAGCTCCCGCCCTCTCCCTTTCCTCCCAAGCAGCTGGCTGTGTA
GCTTGTAGCCTAAGAAATCATATCCGTCTGGAACGTTCATTGTACCGAAT
GTAACGAGGTGTACTGTATCCTATTCTAGTCAGTAACGTTTGATCAGAAA
ACGCCGGGGATCTTAGTCTTTCGGTGGTGACGAGAGGGTGAGGATTTACT
GTACCCTTCACCTTCCTCTAAAGTAAGTTTTTGTATTTGATACCAAGTAC
CCTAGCCGGTCGCCCCGGTAGCTCAGAGGTACCTCGTAACCCTTTGACAC
GTTGGGACGTGAGTTCGATCCCGCCAAACGGGATTTTTCTCACTAAAAAA
CTAAACTAAAAATGCCCAACGGGTGGAGAACGATTAAATCGTTAGTACAC
AAAATTCGACTCAACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTC
GCGAGAAAAGTTAAGGCTCGCACCGCAGAAAGGTGGATGAGAATTTCTGT
GTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACGCACTTGATG
TCCAGAATGAATGGGAAGAAAACACACACACAAACCCTAATGCGTCCGTC
ACTTTCCACTACTACTGTAAAAGTCTCGCAAGTTGCCTTTGGCGAGCGTA
ACGCCTTTGGTCGAGAATGTCCTCAGCCTTTCTTGCGTCAGGTACGGGCT
CGTTAAGCCCATAGTGTTTCGCTCCATTGGTTGGACTTTAATAATAGTAT
CTCGCATCGGATTTGCTCTCCGATTCGGGGTGCCAACCCCCAATTCTTTT
GTTTCTCAACCCACTCGAGTCTTTTTTTTTTGAGCTCGCGCCACTGCCCC
CCTTCCAGTTCCCAAGCACAGAAGTAAATATAAAAATATAGACGCCATTC
TTGACCTTTCCTCTCTCAGCGTACATCGCCGCGGTGTTGGCATGCAACAA
ACACATATGGTTATCTTCCGTGACGTATTTCCCCAAAATACCGCGGCATG
TTCGTTTTAAGTGTGTGGCCGAATTACATCCCGTGCTCCCCCCCCCCCCA
CGCCTTCCTTCCCTCACAACTCCTCTGTGCTCTCTCTCTCTCTCTCTCTT
TAACTTACCTTGCTCAAAGGCCTTGCTGCCGAGATCCCGGAGGATCTTTA
CATGCTTATCAAGAAGGCGGTGGCCGTCCGCAAGCACTTGGAGCGCAACC
GCCGCGACAAGGACTCGAAGTTCCGCCTCATCCTTATCGAGTCGCGCATT
CACCGCCTGGCGCGCTACTACCGCACCAACAGGAAGCTCGCGGCCAACTG
GAAGTACCAGAGCTCTTCCGCCTCTGCGCTTGTGGCTTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig845:134417..135906+

>mRNA_A-nodosum_M_contig845.12.1 ID=mRNA_A-nodosum_M_contig845.12.1|Name=mRNA_A-nodosum_M_contig845.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig845:134417..135906+ (Ascophyllum nodosum dioecious)
ATGTTTCCGCCGTTGGCGTTGCAGATCGGCGTGATCCTGCGTGACTCAAA
CGGCATCGCCCAGGTTAAGGCCATCACTGGCGCCAAGATCCTCCGCCTCC
TCAAGTCCAACGGCCTTGCTGCCGAGATCCCGGAGGATCTTTACATGCTT
ATCAAGAAGGCGGTGGCCGTCCGCAAGCACTTGGAGCGCAACCGCCGCGA
CAAGGACTCGAAGTTCCGCCTCATCCTTATCGAGTCGCGCATTCACCGCC
TGGCGCGCTACTACCGCACCAACAGGAAGCTCGCGGCCAACTGGAAGTAC
CAGAGCTCTTCCGCCTCTGCGCTTGTGGCTTAG
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