mRNA_A-nodosum_M_contig840.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig840.10.1 vs. uniprot
Match: D7FKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD6_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 2.540e-146 Identity = 315/668 (47.16%), Postives = 402/668 (60.18%), Query Frame = 3
Query: 174 MGITSTKMRHEITALKAEIITMERRQAYLVKAAVKQAEVRLSIERERAVREERSRVDQLEELRSVAELENELLKEMVAAEQVNVKLQQKRNQALKWELLRQGGTQEKFDSIVKEVPDLGDTLRADTAHVVHEATTYGMSEAIEHVVSALGDVEEEMRQAFLARDKGRTGALPGSNFKDALRECLPNMPRAERCLLALRFARDEDQSIDYSEFLGFCRRKAQTRERQKLGLVEALAASRSVEPLGVASLGGNRALAATRASKGMTEEQ-----------KLSKNPSAYVRGIPRPEENSREQERGC---PEVFKQGFGHQALQAKRKRVDQKFDVLVARKMTDMIHKRGKDLELMLKRADPAGAGVIPVKQFSECLRSLNVVEVAEGN-----RRKKK------LLLTRSDRKDLYRMWAVHGQVHYNDFLRAGGYANSPPLRYSQSFTTDRRPSLARHNTSPPLPRSADAQGVDELSAPRLQG--LKTDKLKAQAAWAEPRLEEADEELLPARNEVVLAHLAQVLEKKGEETLFEEFEERDADGCRTVDEYDLMDAMAAFAPEVTTEQALDLFRARSNEAEGS---IAYDKFFKELRKRARAGVFQSGDDVQFRVEDREGRLHWVDGQVVSRDEEDSTYTVRFKS--RVPGR--GYVEEYGVIEGHLR 2075
MG ++TKM+ E+TALKA I++ME+ Q+Y+V AAVK+ +L +ER+RAV EER+R DQLEE RSVA+L+NELL EMVAAEQVNVKL ++RN+ALKWELLRQGG QE FDSI KEVP LGDTLRADTA V+H + M+EAIEHVV +G+V++++++AFLARD GRTGAL G+ FKDAL+E P+MPR +R LL LRF R+ DQS+DY EFL FCR KA++RER K+GL ALAA+RS G LA T +G ++ S +P A RG P + + RG +F QG ++A + K++ +I +RG +LE +L DP +G IPVK FSECLR+ + G R K+ LT +DRK LYR W V GQV Y DFL A GY N+P RYS+ T +A + P DA ++ R G L DK A A+ EE L R+ VVL HL++VL +GEE F FE +D R +DE +DA+ APEVT EQ D+F RS EGS YD+ FK+LRK A+ G FQSGD V+ RVE R R+ WV QVVSRD D TYTVRFKS +VPG +++ GV E +R
Sbjct: 1 MGSSNTKMKEEVTALKAHIVSMEKEQSYVVNAAVKKTAEQLVLERDRAVEEERARADQLEEQRSVAQLQNELLTEMVAAEQVNVKLHERRNEALKWELLRQGGCQETFDSIAKEVPVLGDTLRADTADVLHGVAKHDMAEAIEHVVCGIGEVKDDLQEAFLARDTGRTGALGGAAFKDALKESFPDMPREDRQLLMLRFVREVDQSVDYGEFLEFCRHKAESRERLKMGLTGALAATRSAGRFGKCPTTRAGGLACTMPVQGTLGQRPKPFFATALMLSRSDDPPASERGSPFDGWGAGKSRRGTGRTDSIFTQGPNDPGVEAP-----------IQEKVSTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWASSDSERGGGGAGTRAGKREGPSQAAELTHADRKVLYRRWVVRGQVRYVDFLGASGYFNAPLPRYSEISTA-----VAAAPAAAAAPVVTDAPARHPVTRKRASGSLLSGDKAGMHARNADAGEEETG---LLERSRVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVDAIETLAPEVTAEQVHDVFLVRSR-IEGSDDKANYDELFKDLRKLAQIGGFQSGDAVELRVESRGSRVDWVPAQVVSRDG-DGTYTVRFKSPTKVPGATGACMKQSGVSESDMR 647
BLAST of mRNA_A-nodosum_M_contig840.10.1 vs. uniprot
Match: A0A6H5JBT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT1_9PHAE) HSP 1 Score: 290 bits (743), Expect = 1.950e-86 Identity = 157/238 (65.97%), Postives = 193/238 (81.09%), Query Frame = 3
Query: 195 MRHEITALKAEIITMERRQAYLVKAAVKQAEVRLSIERERAVREERSRVDQLEELRSVAELENELLKEMVAAEQVNVKLQQKRNQALKWELLRQGGTQEKFDSIVKEVPDLGDTLRADTAHVVHEATTYGMSEAIEHVVSALGDVEEEMRQAFLARDKGRTGALPGSNFKDALRECLPNMPRAERCLLALRFARDEDQSIDYSEFLGFCRRKAQTRERQKLGLVEALAASRSVEPLGV 908
M+ EITALKA I++ME+ Q+Y+V AAVK+ +L +ERERAV EER+R DQLEE RSVA+L+NELL EMVAAEQVNVKLQ++RN+ALKWELLRQGG QE FDSI KEVP LGDTLRADTA V+H + M+EAIEHVV +G+V++ +++AF+ARD GRTGAL G+ FKDAL+E P+MPR +R LL LRF R+ DQS+DY EFL FCR KAQ+RER K+GL ALAA+RS G+
Sbjct: 1 MKEEITALKAHIVSMEKEQSYVVNAAVKKTAEQLVLERERAVEEERARADQLEEQRSVAQLQNELLTEMVAAEQVNVKLQERRNEALKWELLRQGGCQETFDSIAKEVPVLGDTLRADTADVLHGVAKHDMAEAIEHVVCRIGEVKDGLQEAFVARDTGRTGALGGAAFKDALKESFPDMPREDRQLLMLRFVREVDQSVDYGEFLEFCRHKAQSRERLKMGLTGALAATRSAGIAGI 238
BLAST of mRNA_A-nodosum_M_contig840.10.1 vs. uniprot
Match: A0A835Z1F4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F4_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.390e-27 Identity = 82/188 (43.62%), Postives = 120/188 (63.83%), Query Frame = 3
Query: 339 VDQLEELRSVAELENELLKEMVAAEQVNVKLQQKRNQALKWELLRQGGTQEKFDSIVKEVPDLGDTLRADTAHVVHEATTYGMSEAIEHVVSAL-GDVEEEMRQAFLARDKGRTGALPGSNFKDALRECLPNMPRAERCLLALRFARDEDQSIDYSEFLGFCRRKAQTRERQKLGLVEALAASRSVEP 899
V++ ++ +V +L+N++L EMVAAEQVN +LQQ+R++ALKWELLR+G + +K +I +E P+LG TL + MS A+E + + + G ++ A ARD+G G L +FKDALRE P +PR R LLALRFAR+ED ++ Y EFL F +++A R Q G + AL A+ S+ P
Sbjct: 2 VEKAQQQATVLQLKNDILTEMVAAEQVNARLQQRRSEALKWELLRRGTSADKLAAIAREAPELGATLSRSAPL---PPAPHNMSTAVEAMGALMDGPRRADVETALGARDRGGAGWLSAVDFKDALREAAPELPREGRQLLALRFAREEDDTVPYVEFLEFFKQRAARRHLQ--GAMTALRATASLSP 184 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig840.10.1 >prot_A-nodosum_M_contig840.10.1 ID=prot_A-nodosum_M_contig840.10.1|Name=mRNA_A-nodosum_M_contig840.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=923bp MGITSTKMRHEITALKAEIITMERRQAYLVKAAVKQAEVRLSIERERAVRback to top mRNA from alignment at A-nodosum_M_contig840:135040..147540- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig840.10.1 ID=mRNA_A-nodosum_M_contig840.10.1|Name=mRNA_A-nodosum_M_contig840.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=12501bp|location=Sequence derived from alignment at A-nodosum_M_contig840:135040..147540- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig840:135040..147540- >mRNA_A-nodosum_M_contig840.10.1 ID=mRNA_A-nodosum_M_contig840.10.1|Name=mRNA_A-nodosum_M_contig840.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2769bp|location=Sequence derived from alignment at A-nodosum_M_contig840:135040..147540- (Ascophyllum nodosum dioecious)back to top |