mRNA_A-nodosum_M_contig1136.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1136.14.1
Unique NamemRNA_A-nodosum_M_contig1136.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 9.570e-86
Identity = 130/217 (59.91%), Postives = 168/217 (77.42%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
            LM LA  TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++  T   GIT++RG   G+ ++ F+      ASKATDRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +KE LFLRQVW FM+P  GMPC   FEDNQGA+Q++ NP++NS SKH+DVRHHF+RELV + +I + +VP+ +QHAD LTK ++ + FA+HR F MNL
Sbjct:  107 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 2.660e-85
Identity = 130/217 (59.91%), Postives = 167/217 (76.96%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
            LM LA  TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++  T   GIT++RG   G+ ++ F+      ASKATDRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +KE LFLRQVW FM+P   MPC   FEDNQGA+Q+  NP++NS SKH+DVRHHF+RELV + +I + HVP+++QHAD LTK ++ + FA+HR F MNL
Sbjct:  162 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 6.610e-84
Identity = 129/217 (59.45%), Postives = 166/217 (76.50%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
            LM LA  TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++  T   GIT++RG   G+ ++ F+      ASKATDRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +KE LFLRQVW FM+P  GMPC   FEDNQGA+Q++ NP++NS SKH+DVRHHF+RELV + +I + HVP+ +QHAD LTK ++ +   +HR F MNL
Sbjct:  224 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 1.250e-83
Identity = 133/218 (61.01%), Postives = 161/218 (73.85%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
            LM LA  TRPDI+NAVR++AR YC++PK +HW +A+ IL +   T  FGI++QRGT  G  L+ +       ASKA DRRSVSGG + C G  V WFSRTQKC TLST+EAE+VALG+ VK  LFLRQ+W FM+P  GMPC   FEDNQGA+QL++NP+SNS SKH+DVRHHFLRELV + +I V HVPS YQ AD LTK L+ D F  HR F MNL+
Sbjct:    2 LMWLATQTRPDIANAVRAVAR-YCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNLA 216          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 9.830e-82
Identity = 135/218 (61.93%), Postives = 160/218 (73.39%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
            LM LA  TRPDI+NAVR++AR YC++PK +HW +A+GIL +   T   GI++QRGT  G  L+ +       ASKA DRRSVSGG + C G  V WFSRTQKC TLST+EA +VALGD VKE LFLRQVW FM+P  GMPC   FEDNQGA+QL++NP+SNS SKH+DVRHHFLRELV + +I V HVPS YQ AD LTK L  D F  HR F MNL+
Sbjct:  137 LMWLATQTRPDIANAVRAVAR-YCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESHRDFVMNLA 351          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 1.140e-81
Identity = 135/218 (61.93%), Postives = 161/218 (73.85%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
            LM LA  TRPDI+NAVR++AR YC++PK +HW +A+ IL +   T  FGI++QRGT  G  L+ +       ASKA DRRSVSGG + C G  V WFSRTQKC TLST+EAE+VALGD VKE LFLRQ+W FM+P  GMPC   FEDNQGA+QL++NP+SNS SKH+DVRHHFLRELV + +I V HVPS YQ AD LTK L  D F  HR F MNL+
Sbjct:  248 LMWLATQTRPDIANAVRAVAR-YCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNLA 462          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 7.850e-81
Identity = 126/213 (59.15%), Postives = 161/213 (75.59%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRF 905
            LM LA  TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++  T   GIT++RG   G+ ++ F+      ASK  D RSVSGG +MC G CV WFSRTQKC TLST+EAE+VA  D +KE LFLRQVW FM+P  GMPC   FEDNQGA+Q++ NP++NS SKH+DVRHHF+RELV + +I + HV SE+QHAD LTK ++ + FA+HR F
Sbjct:  199 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 2.540e-80
Identity = 128/217 (58.99%), Postives = 163/217 (75.12%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
            LM LA  TRPDI+NAVR++AR YC++PK IHW++ LGIL ++  T   GIT++RG+  G+ ++ F+      ASKA DRRSVSGG +MC G C+ WFSRTQKC TLST+EAE+V+L D +KE LFLRQVW FM+P  GMPC   FEDNQGA+QL++NP+SNS SKH+DVRHHF+RELV + +I + HV S YQHAD LTK L    F  HR + M++
Sbjct:  224 LMWLATQTRPDIANAVRAVAR-YCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADY--ASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 3.350e-80
Identity = 131/218 (60.09%), Postives = 159/218 (72.94%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
            LM LA  TRPDI+NAVR++AR YC++PK +HW +A+ IL +   T  FGI++QRGT  G  L+ +       ASKA DRRSVSGG + C G  V WFSRTQKC TLST+EAE+VALGD VKE LFLRQ+W F +P  GMPC   FED QG +QL++NP+SNS SKH++VRHHFLRELV + +I V HVPS YQ AD LTK L+ D F  HR F MNL+
Sbjct:  106 LMWLATQTRPDIANAVRAVAR-YCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFTLPQVGMPCIPVFEDIQGVIQLAQNPISNSNSKHINVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNLA 320          
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 3.990e-80
Identity = 129/217 (59.45%), Postives = 167/217 (76.96%), Query Frame = 3
Query:  267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
            LM LA  TRPDI+NAVR++AR YC++P+ +HWK+ALGIL ++  T   GIT++RG   G+ L+ F+      ASKA DRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +K  LFLRQ W FM+P  GMPC   FEDNQGA+Q+++NP++NS SKH+DVRHHF+RELV++ +I + HV SE+QHAD LTK ++ + FA+HR F MNL
Sbjct:   51 LMWLATQTRPDIANAVRAVAR-YCASPQMVHWKAALGILGYVRWTSWMGITFERGVVTGMSLQVFVDADY--ASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKGVLFLRQGWRFMLPDAGMPCIPVFEDNQGAIQIAQNPITNSNSKHIDVRHHFIRELVMRKEISITHVTSEFQHADFLTKAISKESFALHRYFVMNL 264          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP70_9PHAE9.570e-8659.91Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE2.660e-8559.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE6.610e-8459.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEZ8_9PHAE1.250e-8361.01Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE9.830e-8261.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE1.140e-8161.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE7.850e-8159.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE2.540e-8058.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRB4_9PHAE3.350e-8060.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBS9_9PHAE3.990e-8059.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1136contigA-nodosum_M_contig1136:129454..130706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7425.NV18849-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1253
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.29e-35
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size759
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.6085455-UTR-A-nodosum_M_contig1136:129453..1297801680866540.6085455-UTR-A-nodosum_M_contig1136:129453..129780Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1136 129454..129780 -
1680866540.8574414-UTR-A-nodosum_M_contig1136:130539..1307061680866540.8574414-UTR-A-nodosum_M_contig1136:130539..130706Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1136 130540..130706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866540.844555-CDS-A-nodosum_M_contig1136:129780..1305391680866540.844555-CDS-A-nodosum_M_contig1136:129780..130539Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1136 129781..130539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1136.14.1prot_A-nodosum_M_contig1136.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1136 129781..130539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1136.14.1

>prot_A-nodosum_M_contig1136.14.1 ID=prot_A-nodosum_M_contig1136.14.1|Name=mRNA_A-nodosum_M_contig1136.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=253bp
MKRIKLQIADRSVDRCQDRMLGGVSIFVMWDTCLMGLAISTRPDISNAVR
SLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLP
TQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALG
DTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHV
DVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL
SD*
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mRNA from alignment at A-nodosum_M_contig1136:129454..130706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1136.14.1 ID=mRNA_A-nodosum_M_contig1136.14.1|Name=mRNA_A-nodosum_M_contig1136.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1253bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:129454..130706- (Ascophyllum nodosum dioecious)
AAGCTTGATGAGGCAAGCCTTTTTTTTTGCATATCTAGCTCTATTGGATT TATTGTTTCCAAGACATACGTTGTTGTCACTCTAGTGCCAAAAAAAAGTG CTGTGGAGTGGCGGCCGGAGAGCGTCACGTTTCTCCGACGGGAAAATTGA GGAACAGGCCTTGTGGTATGAAAAGGATAAAACTCCAAATTGCGGATAGA TCAGTAGATCGCTGTCAGGACAGGATGCTAGGAGGGGTTTCCATATTTGT AATGTGGGATACATGTTTAATGGGGTTGGCGATTTCGACACGCCCCGATA TTTCCAACGCAGTTCGATCTCTTGCGAGGTGGTACTGTTCCGCACCGAAA GCCATCCACTGGAAATCGGCGCTTGGTATTCTGGCACACATCAATGATAC TTGTGGCTTTGGCATTACATACCAGCGAGGGACATCAGTAGGTATCTTTC TAAAGAGTTTTTTGCCGACGCAGACTATGCCAGCCAGTAAAGCAACCGAC AGGAGGTCTGTGTCAGGCGGTACAATTATGTGTGTAGGTGCATGTGTGTG TTGGTTTTCCAGGACGCAGAAATGTGCCACCCTCTCTACTTCTGAAGCAG AGCATGTTGCTCTTGGCGATACAGTGAAAGAGTTTTTGTTCTTGAGGCAA GTTTGGTGTTTCATGATACCCGGTAAGGGAATGCCGTGTTTTTCTGCCTT TGAGGACAACCAAGGTGCTTTGCAACTCTCGAAGAACCCGGTGTCGAACT CATATTCGAAACACGTCGATGTTCGTCACCATTTCTTGAGAGAGCTTGTC CTCCAGGGGGACATCATCGTAAATCATGTTCCTTCTGAGTATCAACATGC GGATACATTGACGAAAGTTTTAGCGTTTGACTTGTTCGCGATCCACCGAC GTTTTTTTATGAATCTTAGTGATTAATGGAGTTGTGATTTGGTGGATCAG CATGTTAATGGATGTCTGTATGCGTTTTCAAGTGTTGACACAACTGGGGG GCTGTACCAATTCCAGTAGAAAAGAAAGAAAGGGATCAGAGGGACAGTTA CGAAGCATCTATCCAATTTACTCGTCTTGGGGGGCTGAAAAAGATAAGAC TCCAAAATGCGGATAGATCAGTAGATCGCTGCCAGGAATGGATGCTAGGA TGGGTTTCCATATTTATTTGCAATGTAGGGTACATGTTCGGGATACCAAT ATTACTGTTCTGGGAAGCTCCACCTATTGATTAGGTTATTTTTGTCCTCT ACT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1136:129454..130706-

>mRNA_A-nodosum_M_contig1136.14.1 ID=mRNA_A-nodosum_M_contig1136.14.1|Name=mRNA_A-nodosum_M_contig1136.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=759bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:129454..130706- (Ascophyllum nodosum dioecious)
ATGAAAAGGATAAAACTCCAAATTGCGGATAGATCAGTAGATCGCTGTCA
GGACAGGATGCTAGGAGGGGTTTCCATATTTGTAATGTGGGATACATGTT
TAATGGGGTTGGCGATTTCGACACGCCCCGATATTTCCAACGCAGTTCGA
TCTCTTGCGAGGTGGTACTGTTCCGCACCGAAAGCCATCCACTGGAAATC
GGCGCTTGGTATTCTGGCACACATCAATGATACTTGTGGCTTTGGCATTA
CATACCAGCGAGGGACATCAGTAGGTATCTTTCTAAAGAGTTTTTTGCCG
ACGCAGACTATGCCAGCCAGTAAAGCAACCGACAGGAGGTCTGTGTCAGG
CGGTACAATTATGTGTGTAGGTGCATGTGTGTGTTGGTTTTCCAGGACGC
AGAAATGTGCCACCCTCTCTACTTCTGAAGCAGAGCATGTTGCTCTTGGC
GATACAGTGAAAGAGTTTTTGTTCTTGAGGCAAGTTTGGTGTTTCATGAT
ACCCGGTAAGGGAATGCCGTGTTTTTCTGCCTTTGAGGACAACCAAGGTG
CTTTGCAACTCTCGAAGAACCCGGTGTCGAACTCATATTCGAAACACGTC
GATGTTCGTCACCATTTCTTGAGAGAGCTTGTCCTCCAGGGGGACATCAT
CGTAAATCATGTTCCTTCTGAGTATCAACATGCGGATACATTGACGAAAG
TTTTAGCGTTTGACTTGTTCGCGATCCACCGACGTTTTTTTATGAATCTT
AGTGATTAA
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