mRNA_A-nodosum_M_contig1136.14.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 273 bits (698), Expect = 9.570e-86 Identity = 130/217 (59.91%), Postives = 168/217 (77.42%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
LM LA TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++ T GIT++RG G+ ++ F+ ASKATDRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +KE LFLRQVW FM+P GMPC FEDNQGA+Q++ NP++NS SKH+DVRHHF+RELV + +I + +VP+ +QHAD LTK ++ + FA+HR F MNL
Sbjct: 107 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 274 bits (700), Expect = 2.660e-85 Identity = 130/217 (59.91%), Postives = 167/217 (76.96%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
LM LA TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++ T GIT++RG G+ ++ F+ ASKATDRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +KE LFLRQVW FM+P MPC FEDNQGA+Q+ NP++NS SKH+DVRHHF+RELV + +I + HVP+++QHAD LTK ++ + FA+HR F MNL
Sbjct: 162 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 272 bits (696), Expect = 6.610e-84 Identity = 129/217 (59.45%), Postives = 166/217 (76.50%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
LM LA TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++ T GIT++RG G+ ++ F+ ASKATDRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +KE LFLRQVW FM+P GMPC FEDNQGA+Q++ NP++NS SKH+DVRHHF+RELV + +I + HVP+ +QHAD LTK ++ + +HR F MNL
Sbjct: 224 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.250e-83 Identity = 133/218 (61.01%), Postives = 161/218 (73.85%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
LM LA TRPDI+NAVR++AR YC++PK +HW +A+ IL + T FGI++QRGT G L+ + ASKA DRRSVSGG + C G V WFSRTQKC TLST+EAE+VALG+ VK LFLRQ+W FM+P GMPC FEDNQGA+QL++NP+SNS SKH+DVRHHFLRELV + +I V HVPS YQ AD LTK L+ D F HR F MNL+
Sbjct: 2 LMWLATQTRPDIANAVRAVAR-YCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNLA 216
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE) HSP 1 Score: 264 bits (674), Expect = 9.830e-82 Identity = 135/218 (61.93%), Postives = 160/218 (73.39%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
LM LA TRPDI+NAVR++AR YC++PK +HW +A+GIL + T GI++QRGT G L+ + ASKA DRRSVSGG + C G V WFSRTQKC TLST+EA +VALGD VKE LFLRQVW FM+P GMPC FEDNQGA+QL++NP+SNS SKH+DVRHHFLRELV + +I V HVPS YQ AD LTK L D F HR F MNL+
Sbjct: 137 LMWLATQTRPDIANAVRAVAR-YCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAFESHRDFVMNLA 351
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 267 bits (683), Expect = 1.140e-81 Identity = 135/218 (61.93%), Postives = 161/218 (73.85%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
LM LA TRPDI+NAVR++AR YC++PK +HW +A+ IL + T FGI++QRGT G L+ + ASKA DRRSVSGG + C G V WFSRTQKC TLST+EAE+VALGD VKE LFLRQ+W FM+P GMPC FEDNQGA+QL++NP+SNS SKH+DVRHHFLRELV + +I V HVPS YQ AD LTK L D F HR F MNL+
Sbjct: 248 LMWLATQTRPDIANAVRAVAR-YCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNLA 462
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 263 bits (673), Expect = 7.850e-81 Identity = 126/213 (59.15%), Postives = 161/213 (75.59%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRF 905
LM LA TRPDI+NAVR++AR YC++PK +HWK+ALGIL ++ T GIT++RG G+ ++ F+ ASK D RSVSGG +MC G CV WFSRTQKC TLST+EAE+VA D +KE LFLRQVW FM+P GMPC FEDNQGA+Q++ NP++NS SKH+DVRHHF+RELV + +I + HV SE+QHAD LTK ++ + FA+HR F
Sbjct: 199 LMWLATQTRPDIANAVRAVAR-YCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 263 bits (672), Expect = 2.540e-80 Identity = 128/217 (58.99%), Postives = 163/217 (75.12%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
LM LA TRPDI+NAVR++AR YC++PK IHW++ LGIL ++ T GIT++RG+ G+ ++ F+ ASKA DRRSVSGG +MC G C+ WFSRTQKC TLST+EAE+V+L D +KE LFLRQVW FM+P GMPC FEDNQGA+QL++NP+SNS SKH+DVRHHF+RELV + +I + HV S YQHAD LTK L F HR + M++
Sbjct: 224 LMWLATQTRPDIANAVRAVAR-YCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADY--ASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE) HSP 1 Score: 259 bits (661), Expect = 3.350e-80 Identity = 131/218 (60.09%), Postives = 159/218 (72.94%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNLS 920
LM LA TRPDI+NAVR++AR YC++PK +HW +A+ IL + T FGI++QRGT G L+ + ASKA DRRSVSGG + C G V WFSRTQKC TLST+EAE+VALGD VKE LFLRQ+W F +P GMPC FED QG +QL++NP+SNS SKH++VRHHFLRELV + +I V HVPS YQ AD LTK L+ D F HR F MNL+
Sbjct: 106 LMWLATQTRPDIANAVRAVAR-YCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADF--ASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFTLPQVGMPCIPVFEDIQGVIQLAQNPISNSNSKHINVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNLA 320
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE) HSP 1 Score: 270 bits (690), Expect = 3.990e-80 Identity = 129/217 (59.45%), Postives = 167/217 (76.96%), Query Frame = 3
Query: 267 LMGLAISTRPDISNAVRSLARWYCSAPKAIHWKSALGILAHINDTCGFGITYQRGTSVGIFLKSFLPTQTMPASKATDRRSVSGGTIMCVGACVCWFSRTQKCATLSTSEAEHVALGDTVKEFLFLRQVWCFMIPGKGMPCFSAFEDNQGALQLSKNPVSNSYSKHVDVRHHFLRELVLQGDIIVNHVPSEYQHADTLTKVLAFDLFAIHRRFFMNL 917
LM LA TRPDI+NAVR++AR YC++P+ +HWK+ALGIL ++ T GIT++RG G+ L+ F+ ASKA DRRSVSGG +MC G CV WFSRTQKC TLST+EAE+VA+ D +K LFLRQ W FM+P GMPC FEDNQGA+Q+++NP++NS SKH+DVRHHF+RELV++ +I + HV SE+QHAD LTK ++ + FA+HR F MNL
Sbjct: 51 LMWLATQTRPDIANAVRAVAR-YCASPQMVHWKAALGILGYVRWTSWMGITFERGVVTGMSLQVFVDADY--ASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKGVLFLRQGWRFMLPDAGMPCIPVFEDNQGAIQIAQNPITNSNSKHIDVRHHFIRELVMRKEISITHVTSEFQHADFLTKAISKESFALHRYFVMNL 264 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1136.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1136.14.1 >prot_A-nodosum_M_contig1136.14.1 ID=prot_A-nodosum_M_contig1136.14.1|Name=mRNA_A-nodosum_M_contig1136.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=253bp MKRIKLQIADRSVDRCQDRMLGGVSIFVMWDTCLMGLAISTRPDISNAVRback to top mRNA from alignment at A-nodosum_M_contig1136:129454..130706- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1136.14.1 ID=mRNA_A-nodosum_M_contig1136.14.1|Name=mRNA_A-nodosum_M_contig1136.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1253bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:129454..130706- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1136:129454..130706- >mRNA_A-nodosum_M_contig1136.14.1 ID=mRNA_A-nodosum_M_contig1136.14.1|Name=mRNA_A-nodosum_M_contig1136.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=759bp|location=Sequence derived from alignment at A-nodosum_M_contig1136:129454..130706- (Ascophyllum nodosum dioecious)back to top |