mRNA_A-nodosum_M_contig1131.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1131.32.1
Unique NamemRNA_A-nodosum_M_contig1131.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: D8LF37_ECTSI (S1 motif domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF37_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 4.490e-101
Identity = 154/180 (85.56%), Postives = 165/180 (91.67%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 617
            GR +EYRAGPGTYVRG YIYASV+GPK EQ A    D KP+++VSQP+RARA DQVIQVGD VM RVTRISTRQA VEIICVGETVLREPHRGIV+KEDIRATE+DKA+VA SLRPGDIIRARVISLGDST YFLSTAENELGVRWAKS+AG+IMIPISWQEMQCPTTKEKEPRKCAKPV
Sbjct:   12 GRASEYRAGPGTYVRGTYIYASVVGPKLEQAAA-DEDGKPYLIVSQPKRARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 190
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A835YI70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI70_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.690e-66
Identity = 107/180 (59.44%), Postives = 138/180 (76.67%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSA-GSIMIPISWQEMQCPTTKEKEPRKCAKP 614
            GR +E+ +GPGTY RG +I+AS++GP  +Q+   GG   P + V   R A+  DQVI+VGD+VMARVTR+    ASVEI+C GETVLRE + GI+KKED+RATE+D+  +  S RPGDI+RARV SLGD+  Y+L+TA  +LGVRWAKS A G+IM+P+SWQEMQCP T  +EPRKCA+P
Sbjct:   14 GRASEFTSGPGTYTRGPHIFASLVGPVLQQEGAEGG--LPVITVRGGRNAQ--DQVIEVGDVVMARVTRVRALLASVEILCAGETVLREAYNGIIKKEDVRATEVDRVDMGQSFRPGDIVRARVSSLGDARQYYLTTAAPDLGVRWAKSDASGAIMVPVSWQEMQCPVTGVREPRKCARP 189
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: H6WBA8_VAULI (S1 motif domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA8_VAULI)

HSP 1 Score: 178 bits (451), Expect = 3.850e-52
Identity = 88/179 (49.16%), Postives = 127/179 (70.95%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKP 614
            GR +EY +G GTYVRG +IY+S++G  ++ +     ++ P + V    +     Q+++VG +VM RVTR+    ASV+I+C G+ VLRE  +GI++KED+R+TE+DK  +    RPGDI+R +VISLG+S  YFLST+  +LGV WA+S AG +++PISW++MQCP TK  E RKCAKP
Sbjct:   12 GRCDEYTSGNGTYVRGPHIYSSLVGRIQKIEVP---ENLPVLTVK--GKKAVVGQILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKEDVRSTEVDKVDMWKCFRPGDIVRTKVISLGNSRDYFLSTSGEDLGVSWARSEAGEVLVPISWEQMQCPKTKAVEFRKCAKP 185
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A2P6NTR0_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NTR0_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 6.910e-49
Identity = 89/178 (50.00%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAK 611
            G  + + +G GTY+ G Y++ASV+G +EE     GG  K  + V   ++ +    V  +  IV ARVTR++ R  +V I+CVG+ VLREP  G+++++D+RATEIDK ++    RPGDI+ A VISLGDS  YFLSTA+NELGV +AKS AG+ M+P SW+ M CP TK KE RK AK
Sbjct:   16 GHTDTFESGEGTYILGNYVHASVIGAREETAGKDGG--KTLLSV---KKEKEPSIVPDIKSIVTARVTRVNPRFVNVSILCVGDRVLREPFAGMIRQQDVRATEIDKVEIYKCFRPGDIVLAEVISLGDSRSYFLSTAKNELGVIFAKSVAGATMVPTSWESMMCPKTKTKEFRKVAK 188
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A4P9XTZ4_9FUNG (S1 motif domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XTZ4_9FUNG)

HSP 1 Score: 169 bits (428), Expect = 1.040e-48
Identity = 91/180 (50.56%), Postives = 124/180 (68.89%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 617
            GR ++YR GPGTYVR + I+AS++G +E   A   G+  P + V+   R R    + QV  IV  +V R++ R A+V I+ VG T  R+  +GI++ +D+RATE DK ++    RPGD++RA+VISLGD+  Y+LSTA+NELGV +A+S AG  MIPISWQEMQC  TK  E RKCAKP+
Sbjct:   14 GREHQYRTGPGTYVRNSVIHASIVGTREIHSAAEEGE-LPTISVT---RGREQTTLPQVDSIVTGKVLRVNPRFATVAIMAVGPTACRDEFQGIIRVQDVRATEKDKVKIYHCFRPGDVVRAQVISLGDARSYYLSTAQNELGVIFARSVAGVPMIPISWQEMQCTKTKTVELRKCAKPM 189
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: D8S0J7_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S0J7_SELML)

HSP 1 Score: 169 bits (428), Expect = 1.330e-48
Identity = 89/181 (49.17%), Postives = 121/181 (66.85%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDD-KPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 617
            G  +E+ AG G+Y     IYAS++G +   +A  G DD +P + +   RR +  D V + G  V A++T++  R AS +I+CVG   ++E   GIV+++D+R TEIDK  +  S RPGDIIRA VISLGDS  Y+LSTA+NELGV  A S AG+ M+ +SWQEMQCP T ++EPRK AK V
Sbjct:   16 GLASEFNAGRGSYCHDGKIYASLVGIRHLIEAKQGSDDLRPTIEI---RREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVRQQDVRLTEIDKVDMHSSFRPGDIIRAEVISLGDSRAYYLSTAKNELGVVSAVSVAGATMVAVSWQEMQCPLTNQREPRKVAKVV 193
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A1Y1I354_KLENI (Exosome complex component CSL4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I354_KLENI)

HSP 1 Score: 167 bits (424), Expect = 4.700e-48
Identity = 86/178 (48.31%), Postives = 121/178 (67.98%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAK 611
            GRV+EY +G GT+VRG +I AS++G +       G  DK  + V +    +    V + G  V A+V RI  R+A+ +I+CVG   + +   GI++++D+RATEIDK ++A S RPGDI+RA V+SLGD+  Y+LSTA+NELGV +AKS AG  M+P+SW++MQCP TK  E RK AK
Sbjct:   15 GRVSEYTSGRGTHVRGDHICASIVGQQSISAPAAGASDKAQLPVIEVINGKERSAVPETGSTVTAKVVRIDHRKATADILCVGLRAVTQKFTGIIRQQDVRATEIDKVEIATSFRPGDIVRAEVLSLGDARAYYLSTAKNELGVVFAKSPAGVRMVPVSWEKMQCPKTKVIELRKVAK 192
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A2R6WRL8_MARPO (S1 motif domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WRL8_MARPO)

HSP 1 Score: 167 bits (423), Expect = 6.250e-48
Identity = 89/181 (49.17%), Postives = 123/181 (67.96%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGP-KEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 617
            G  +EY AGPGTYV    +YASV+G  +    A    D +P + V++ +   A   V + G +V A++T++  RQA+  I+CVG   +R+   GI++++D+RATEIDK  +  S RPGDI+RA VISLGDS  Y+LSTA+NELGV  A S AG+ M+P+SWQEMQCP T ++EPRK AK +
Sbjct:   14 GWASEYVAGPGTYVWHEKVYASVVGLLRLTPAATDVEDQRPTIEVTREKERGA---VPEPGTVVTAKITKLFPRQAAASIVCVGPRAVRDKFTGIIRQQDVRATEIDKVDMHTSFRPGDIVRAEVISLGDSRAYYLSTAKNELGVVSATSDAGAAMVPVSWQEMQCPITGQREPRKVAKVI 191
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: W7U6U4_9STRA (3-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.060e-47
Identity = 89/194 (45.88%), Postives = 128/194 (65.98%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARAT-----DQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSA----------GSIMIPISWQEMQCPTTKEKEPRKCAKP 614
            GR++ +++GPGTY++G +IYAS+LG  +  Q +  GD  P + VS P +A A      + V+ VG +V  RV RI+++QA VEI+ +G  VLR+  +GI+KKED+   +ID+ ++    RPGDI+RARV+SLGDS  Y+L TAE+ELGV +A+S            G +M+P+SW+ M  P TK  EPRK AKP
Sbjct:   22 GRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGD-LPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214
[Close]
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A176WMU3_MARPO (S1 motif domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WMU3_MARPO)

HSP 1 Score: 168 bits (425), Expect = 3.650e-47
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = 3 
Query:   78 GRVNEYRAGPGTYVRGAYIYASVLGP-KEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 617
            G  +EY AGPGTYV    +YASV+G  +    A    D +P + V++ +   A   V + G +V A++T++  RQA+  I+CVG   +R+   GI++++D+RATEIDK  +  S RPGDI+RA VISLGDS  Y+LSTA+NELGV  A S AG+ M+P+SWQEMQCP T ++EPRK AK V
Sbjct:   14 GWASEYVAGPGTYVWHEKVYASVVGLLRLTPAATDVEDQRPTIEVTREKERGA---VPEPGTVVTAKITKLFPRQAAASIVCVGPRAVRDKFTGIIRQQDVRATEIDKVDMHTSFRPGDIVRAEVISLGDSRAYYLSTAKNELGVVSATSDAGAAMVPVSWQEMQCPITGQREPRKVAKEV 191
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF37_ECTSI4.490e-10185.56S1 motif domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YI70_9STRA3.690e-6659.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H6WBA8_VAULI3.850e-5249.16S1 motif domain-containing protein n=1 Tax=Vaucher... [more]
A0A2P6NTR0_9EUKA6.910e-4950.00Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A4P9XTZ4_9FUNG1.040e-4850.56S1 motif domain-containing protein n=1 Tax=Thamnoc... [more]
D8S0J7_SELML1.330e-4849.17Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A1Y1I354_KLENI4.700e-4848.31Exosome complex component CSL4 n=1 Tax=Klebsormidi... [more]
A0A2R6WRL8_MARPO6.250e-4849.17S1 motif domain-containing protein n=1 Tax=Marchan... [more]
W7U6U4_9STRA2.060e-4745.883-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis g... [more]
A0A176WMU3_MARPO3.650e-4749.72S1 motif domain-containing protein n=1 Tax=Marchan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1131contigA-nodosum_M_contig1131:219242..226462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LF37
Preferred nameEXOSC1
PFAMsECR1_N,EXOSC1
Model size866
Max annot lvl2759|Eukaryota
KEGG koko:K03320,ko:K07573,ko:K12669
KEGG TC1.A.11,9.A.45.1.2,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko03018,ko04141,map00510,map00513,map01100,map03018,map04141
KEGG ModuleM00072,M00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016078,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0016973,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034613,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042886,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons5
Evalue3.08e-103
EggNOG OGsCOG1096@1|root,KOG3409@2759|Eukaryota
Ec32 ortholog descriptionCsl4 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-06_001520.1
Descriptionexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
Cds size588
COG categoryJ
BRITEko00000,ko00001,ko00002,ko02000,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1131.32.1prot_A-nodosum_M_contig1131.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1131 219488..226430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866537.7366073-UTR-A-nodosum_M_contig1131:219241..2194871680866537.7366073-UTR-A-nodosum_M_contig1131:219241..219487Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1131 219242..219487 -
1680866537.8100574-UTR-A-nodosum_M_contig1131:226430..2264621680866537.8100574-UTR-A-nodosum_M_contig1131:226430..226462Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1131 226431..226462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866537.753517-CDS-A-nodosum_M_contig1131:219487..2195471680866537.753517-CDS-A-nodosum_M_contig1131:219487..219547Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1131 219488..219547 -
1680866537.7632642-CDS-A-nodosum_M_contig1131:220235..2204241680866537.7632642-CDS-A-nodosum_M_contig1131:220235..220424Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1131 220236..220424 -
1680866537.7711856-CDS-A-nodosum_M_contig1131:220574..2207391680866537.7711856-CDS-A-nodosum_M_contig1131:220574..220739Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1131 220575..220739 -
1680866537.7838717-CDS-A-nodosum_M_contig1131:225261..2253891680866537.7838717-CDS-A-nodosum_M_contig1131:225261..225389Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1131 225262..225389 -
1680866537.7999446-CDS-A-nodosum_M_contig1131:226384..2264301680866537.7999446-CDS-A-nodosum_M_contig1131:226384..226430Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1131 226385..226430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1131.32.1

>prot_A-nodosum_M_contig1131.32.1 ID=prot_A-nodosum_M_contig1131.32.1|Name=mRNA_A-nodosum_M_contig1131.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=196bp
MKSSGRSHKEERGKPGRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPG
GDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGET
VLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFL
STAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV*
back to top

mRNA from alignment at A-nodosum_M_contig1131:219242..226462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1131.32.1 ID=mRNA_A-nodosum_M_contig1131.32.1|Name=mRNA_A-nodosum_M_contig1131.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7221bp|location=Sequence derived from alignment at A-nodosum_M_contig1131:219242..226462- (Ascophyllum nodosum dioecious)
AGTACAAGACGCCGTTATTCACCTGGAAGTAGATGAAGAGCAGTGGGCGA
TCACACAAGGAAGAAAGAGGCAAGCCAGGTGGGTATGGTCCCCACGCATG
ATGTCAGGTCTACGGCTTCCAGATACACTCCTCATGCTCAACACCAACAC
AACGATCCACGCGTTTAGACCGGAAACAAAAGAAGGAGTATCTAGCTAGC
CCATGAGTGACACACGTAGGCGTTGCCTCAAACAAACCGAGGTGACCACA
CTTCTTGTTGTTGTCTTTCTAACATCCGTACTGGTCCAACTGACGCGGAC
GCCTTCCGTGGTCACAGGCTAACTACCCAGAAAGGGTACACATATCAGAA
AGAAATAAAAGGACCCAGAAAAGTCAACACACACGCGATAATTTGAAAAT
AAAATAAAACCCCCCAGAAAAATAAGTCTCCAGACAGTCAGACGTCGCAG
GCGACATGTCAGACAAAGGAGATAGATAGAGCCCATCGCTCCCACTCGAC
ACGCGAGGCCAAGCAAAATGAAACAAACAAAAATAATCAAGGATCACCAA
TCAAGACAATAAAATCGCATGATTCTATCCTTGTACCCCTACTAGGCCGG
GGTGTATTCACCGCCGGGTTTGCACCGCCCAGTATATATATTAAATTGCA
CATAACCGCGCAATCCGGCCCTGTCATCCGAGTCATTCTATGCCACTCGC
ATTGATCCTCCCAAGGGGGGATCAATGATGCTTGTTACGAAAACCTCTGA
TCAAACGCGACAAAGGTATGTATGTATGTATGTATGGTCATCACATATAG
CAGAGTATGGATCAACCCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGC
TGAACAGGGAAAATGAATATTCCCCTGTCCCCGTGCGTACTCGGATTTGG
AAACCATAAGTCGCGCGAGTCTACACACCTGGTAATTTATTCGCGCGCTG
CCGCGAGCGAATTCAATTTCCGCGACGAATAGCTAGCTGCGCTCAATCAC
TTGGCCGGTTAAACTTGCGAGTACGATTGGCCACACGGTATGACAGAGAT
AGTATGCCCGGGCAAACGCTTAGGTAGGGTGAACGAATATAGGGCAGGAC
CTGGCACGTATGTGAGAGGAGCTTATATTTACGCCAGCGTATTGGGGCCC
AAGGAGGAGCAGCAGGCTGATCCCGGAGGCGATGATAAACCGTTCGTTAT
GGTAAGTGGTGATGATTTGTGTTTATACTTTGTATCTCCCTTACGAGTAC
GGCCGATGGACCTCATCATGCTGGGTTGCCAATCTCACCTAATGCAACGC
CACCAATCTTCCTGAGGTCACCAAGGGAAAATCTCTCCCCGATTCTCGCC
TACTAATATTGAACACGATTTTTTTATCGCGATGCAAGTTCAACATTCTC
ACGACTCGTGAACTAATAGTTGAATTTTACTTACTCGCGTTCTCACCCTT
TCCTCCAACGGAAACCAAAATAGAAGATACCGTAGGAGATAGAAGACGAT
TATTAATAGGGTCTGTGGCCCGATCTTACGTCAAGATATAATATGTCCAT
AGAATCTGCGGGTGGACATATTCCATCGACAGATCCTATTTTCTATTTTG
GGTCCAAACCACGATATTATTATGAAATGCGACGGTGCGATGTAATTAGA
CAGTCACGCCTCGGAATCCTTTTAGAAACATATTACCAGGTACCAGGTAG
GATTTATTGGCAATCTTTTTTAGACGGTTAGAGGTACGTACTATAATGCT
CTCCTGCCCCGGCTGCCTCCCGGCCGGGGTGGACCCAAATCATGGAAGCG
AGGAGACGGTAGGGAGTCCAGGCGTGCTGTGACCAACTAACGGCACAGCC
GATGGCGTCGGCCGTGCACTCCCAGTTGAGTCCACAATTCAGACCGTTCG
TACCAACGGCCATGACACCAAAACTGGCGTACTGTACCGCGGCGGAAAGC
GGGAGGGAGGAGAGGAGCCTGTGAGTAAGCACCGGATTCGCTCCGAAAAC
GAAAGATGAGCGGGGCGACGCGGGGTGGGACGGCTGAACCCACGCCGCAA
GACCAAAATTCAAGTCAAGAACGGGGACAGGGATAGGATAAAGTCACAAA
GAGGAGGAAATTCTTGGCGCGCAAACGGAGACGGCGAGGCAGAACAGAGC
GACGCCTCCTGCGACAAAGCGGAACGATGAATTGACCGCGTGCGCGTACA
CGGGAGATCACAGTTGCCACGCATAATGTACGGACGATGGCGGTGGATGG
GACGCACGGAGTTGGACGGGCGCTGGATGTTTTGAGTGTGTACGACCGGC
TGGGGTGCGACGTCATTGGTCTGCAGGAGACCCACCGCAGCGGACGCTCA
GCCTTCACCCAGGCTGGCTACCTGGTGCACTGTACTGCAGCGGTGAGCGC
GGTGGCGAGAATGGTGGGAAGAAAGGGCAAGGGGAGTAGGACTAGGTGTG
AGGATCTCCATCACGCGTGCTGTACGCCCACTGGAGTTTATCAGTGATCG
CTTGCTAAAGATTACACTTGGTTACGTGGTCGAGCTAAGGCCGTTACGTC
TTTTGTATTGTATGCCCCAACTGAAACGCAGAATGCTAGTAATAAACATG
CATTCTGGAAACCTTGGGCAGAGTTGTGGAGGAGGTACCTGAACACGAAC
AGCTGTTCGTCGTTTTGATGGATGCCAACGCCCGCACGGGGAGGAGGGAA
AAGGGAGGGGTGGGAAGCAAGGATAGCAAAATTCTCGGTGCTTACGGCCG
AGATACCCTTAACGACAACGGAGAACTACTGCTGTCCTTCGCTAACAACC
ATGACCTAGCTCTTGTGAACACGTTCTTAGCACACCCAAGGGCGGCGTAT
CAGATACTTTCAACAAGCGGATAAAAAAACGTATCGACTACATCCTAACG
AGTCAACGTGATCGCAAACTCGTACGGAACGTTACGGTGCACCCCCAGAC
CTCCTTCCTTTCCATTTCGGACCACAACATTGTGTCCGCACCCGTCAAGC
TCGTCGGCCATTTTGCTCGAAACCGCCGTTTGAGGGCTTCAGCTAAGCCA
CCACTGGACCGTAGGCGCCTCGAGACTGAGCTCCAACATCGACAGGAGGT
GGCCACATCGATTGAAAGGCGCCTCGGGCAAACCTGCCTGGAGACAGCAG
TGTGGACGACGTGGAAGCCGCATTCACCGCAGCCATCATGCGGACCGCTG
AATTGGTGATCCCACCCCAGGAAGAAACCCAGGACGAGGTTGGAATAGAG
ACGCCCAAACGGAAGCTGAGCTGCAGGCTGCAACTATGCGATGCACGCAG
CCTGGTAGCGCCTGCAAGCAGACACTAGGGATGCGCAGCTGCGGAGGGCC
ATCAGGAAGGCATGTAACTGGCTGAAGAGAGTGCGAAGTGAAGCAGTCGT
CTGTTTCTTCGAGCACCACGTCGTTGAGTTGGAGAAGCAGTTGCGCATGG
GAGACCAGCATGAATTCCTCCAAAACATAACATCGTTGCAGCTGGGGGAG
ACGAAAAAGGTCAAATCACAGTGCGGGCGTGACGAGGAAGGGAAACTGCT
GCGAGACTAAGGGCGTATCCGCGAGAGATGGGTGCGATTCTTCCGCTCGC
TCCTGAAGGCTAAATCCGACATGCTAGATCCCGACATCCCGAATAGGCTG
CCGCAGCAACCAGTCGCGAGTGCCCTCGGGATCGAGCCCACGGAGGAGGA
GATTGCCACAGCGATGAAGGCAATGGCAAACGCGAAAACAGTGGGGCCGG
ACGATCTGCCCACGGAACTGCCGAAACTCTGACTTCAACAAGACCGGACA
ATCCTGCTGGAGCACCACTGACTCACCACCCTCATCTGGTGCGAGGGGAA
AGTCCCACAGCAGTAGAAGGACGCGGTCATTACAGTACTCCACAAGAAGG
GCAAGATGGAGCGCGGAAATTACCGCAGGATCTCGCTCGTGTCACACGCG
GGTAAGGTACTCCTTAAAGTGATTGCCAGGAGACTTCGCACTTACTGTGA
GGCGAAGGGACCGTTACCGGAGGAGCAGTGCGGGTTTCGACTGGATCGCT
CGACCACGGACATGATGTTTATGGTGCGCAGGCTGCAGGAAATTGGGCGG
AAGGCAGTAGGGTCTCTCTTCATGTGCTTATATATCTTCAGAAGGTGTAC
GACACCGTTGGCCGCACCCTCCTGTGGCAGGTACTCACTTGCATCGCAGT
ACCACCGCAGGTGATAGCAGTCATCCAACAATTCCACGATGGTATGAGAG
CTTGTGTGCGACCTGATGATGGCGTCGGTTCGGATTGGTTCGAAGTGGAA
CAAGGACTACGGCAAGGATGCGTGCTATCCCCGCTGTTGTTCAACGTCTC
CTTCGCAGCCGTGCTGACCGTTGTCCTCCAAAGATTCAGCGAGGATACGT
TCATCCTCGCCAAGCTGGTGCACCTGAAGAAACCGCCGACGTCGATGGGA
ACCGGATCCGGTTATGGACTGCGTTCGTCGTGCGGTGTGGGGCATGCTAT
ACGCGGATGACGCCTGCATAGCTTCGTGATCGCCGCAGGGGCTCGCTAAG
ATGATGGAAGTCATTGTAGAGGTTTGCCAAGCCTTCGCGTTAACCGTGTC
GACGAAGAAGACAGAGACCATTTGCATGCCTCTACCGCGTAAACCGCGGA
CGATGGTGCGAGTCGAAGCGGCCGGGCAAAAATACAAACCGGTACAATCC
TTCACCTACCTAGGGGGCGCCGTGACCGAAGTCCCGGACATGTCCGTTGA
AATCGCCAGGCGGACCCGCGCATGCTGGATGCGCATCATGCGGTACCTAC
GTGAGCTCTACGACCAACCGAAAGTAGCGCTCTCCCTCAAGACCCGAATG
GTAAAGGCCGAGGCAATCGAGACCCTCCTGTATGGATGCAGAACGTGTAC
CGTTCGCCAGGAACACTACGCCAAACTCCGCACCGTACATCACCGGGTCT
TGCTTCCCGTCATGGGGGCACAGCGCAAGAGATCAGAACATCGGATGACC
TCGTATAACCGTGCCCTTGAGATAACCCGGTGTGAGAGCATTGAGACGAC
GTTGCGCACGAGAAGACTTTTGTGGGCGGGGACGCTCATCCGAATGAGCG
GTGGGCGGGTGCCAAAGCGAATCGTGTTCGGAAACCTTGAGGGTGCAGTG
GGAGAGGACGGATTGGGAAGGAGAAAGAGAGGACCGATCAGAGCGACATC
CGGGCGTTTGGCATAGCGGGGGATTGGAAAGCAACGGTGTTCTAGTAATT
TCGTGTTTTATCTGCCCCGCTTGATTATTTCGCTGGGTCTGACCATTTTT
CTCGTGTTGTAGAAAAAAAAAACTAATGGTTTCTTCTCTCGAGCATTCCG
AAAATCGAAAGGGCAACCATTCCTTATGACTGGGGCCCAATGGGTTGTTG
TAACGACTCACAGACACAAAAACCGTGAAAGGACAAAAGCAAAAGGCAGA
CGTACTTTTATCCAATGTGTCAAAAGGTTTCCTACCCCGCTCGGCGAAAT
TGCTATAATACCCTACTATACCAGTACCGTGATTCCAACATCAACATCGC
ACAGCGTCGCTATTAAATACTCTATTGATGTTAATAGTACTCTAGTACTA
ATTACTGTAGTAGTTCAATCGTGTTGCGGGGGTGGGGGCGACTATGACAG
AAGAGTACGGAGCGTTTGCTTGCGCGAGGGCTTCTGACAGGAGGGAAACG
CTTGTGTTCTGGCGCTGTCTCAGGTTTCTCAGCCGAGGCGAGCAAGAGCG
ACCGACCAAGTGATTCAGGTCGGCGACATCGTCATGGCCAGAGTCACCCG
GATCAGCACCCGACAAGCATCGGTGGAGATCATTTGCGTTGGGGAAACCG
TTCTGCGAGAACCTCACAGAGGCATAGTAAAAAAGGAGGTGGGTCAGTCC
CTTATGCCCCTACCGCCCTTACGCCCATACGGTGCAACCGATACAGAACC
CGAGAAAAGCGTCTTTTATGAGTGTGGTACTGTACTATACTAGAGTCTAT
ACTACCACTTTCATCTTCCGTTCCCCACCTCTCCACAGGACATTCGGGCG
ACAGAAATTGACAAGGCGCAGGTAGCGTTGTCGCTAAGGCCGGGCGACAT
TATCAGGGCGCGTGTAATCTCGTTGGGGGACTCGACGCATTACTTCCTGA
GCACAGCGGAGAATGAGCTAGGAGTGCGCTGGGCCAAGAGCTCGGCCGGT
TCGATTATGATCCCAATAAGTTGGCAGGTGATGTGGGTAAGGTAGTCAAA
ACGCGGTGCAATCGACCGAGATCTCAACAGACTCAAAATTTAGCGAGAAC
CTAACTAGGCCAGACCTGGCGTCGCCGCGCGTGCTACTGTAATATTTATG
TTATAACATTTATGTTAAATCTCATCTCCGCATTGTGCCAAAGCAGACAC
ACACACACACACGCACACCCTTGGGAGGATCAACGCGAGTGGCATAGAAT
GACTAGGATGACAAGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATA
CGCACACACACACACATGTGCAATTTAATAAATACACACACACACGTACA
CGCACACGCACACACACACACACTTTCGTAACAAGTATCATTGGTCCCCC
CTTGGGAGGATCAACGCGAGTGGCATAGAATGACTAGGATGACAAGGCCG
GATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACGCACACAC
ACACGCTTTGAGCAAAAGCGTCACGAGCATGGCTTGTTACCCATTCACAG
TAAGAGTTGGTTTTTGCTGGTGATGCAATCAAACCCACGGTTCGCTTCAC
GAACATACGAGTATAAAGTGTAGAGGTCTCGAGTGCGCAGCCTGCGGTGA
CACGAATCAGAATCCCTACCCACGGCCTGTGACCATAAATCCGCCTCTGG
TACATTGTATCCCAGGAGATGCAATGCCCGACAACCAAGGAGAAAGAGCC
TCGGAAATGCGCCAAGCCAGTGTGAAGAGTCAAGAACGCAAATCAAATCT
GGTGGGGGACTCCCGCGCGCAGATTAAAGCAATCGGAAGCCGTACGTCCA
CGGAATAGCGACTCTTTGGGGTGGAAAGCGTGTTGAAGCGGTGAAAGCAT
TAGATGCCGTCGTCATTTGCCTTTGTGGCGCCACAAGAAGAAGGGGAGAA
AGGGATGAAATAAAGGGACCAAAATCACTAAATAAAAACAAAAACAAAGC
TGGAAATGTAATTCTTCGTCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1131:219242..226462-

>mRNA_A-nodosum_M_contig1131.32.1 ID=mRNA_A-nodosum_M_contig1131.32.1|Name=mRNA_A-nodosum_M_contig1131.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at A-nodosum_M_contig1131:219242..226462- (Ascophyllum nodosum dioecious)
ATGAAGAGCAGTGGGCGATCACACAAGGAAGAAAGAGGCAAGCCAGGTAG
GGTGAACGAATATAGGGCAGGACCTGGCACGTATGTGAGAGGAGCTTATA
TTTACGCCAGCGTATTGGGGCCCAAGGAGGAGCAGCAGGCTGATCCCGGA
GGCGATGATAAACCGTTCGTTATGGTTTCTCAGCCGAGGCGAGCAAGAGC
GACCGACCAAGTGATTCAGGTCGGCGACATCGTCATGGCCAGAGTCACCC
GGATCAGCACCCGACAAGCATCGGTGGAGATCATTTGCGTTGGGGAAACC
GTTCTGCGAGAACCTCACAGAGGCATAGTAAAAAAGGAGGACATTCGGGC
GACAGAAATTGACAAGGCGCAGGTAGCGTTGTCGCTAAGGCCGGGCGACA
TTATCAGGGCGCGTGTAATCTCGTTGGGGGACTCGACGCATTACTTCCTG
AGCACAGCGGAGAATGAGCTAGGAGTGCGCTGGGCCAAGAGCTCGGCCGG
TTCGATTATGATCCCAATAAGTTGGCAGGAGATGCAATGCCCGACAACCA
AGGAGAAAGAGCCTCGGAAATGCGCCAAGCCAGTGTGA
back to top