prot_A-nodosum_M_contig1131.32.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1131.32.1
Unique Nameprot_A-nodosum_M_contig1131.32.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length196
Homology
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: D8LF37_ECTSI (S1 motif domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF37_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 1.880e-102
Identity = 154/180 (85.56%), Postives = 165/180 (91.67%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 195
            GR +EYRAGPGTYVRG YIYASV+GPK EQ A    D KP+++VSQP+RARA DQVIQVGD VM RVTRISTRQA VEIICVGETVLREPHRGIV+KEDIRATE+DKA+VA SLRPGDIIRARVISLGDST YFLSTAENELGVRWAKS+AG+IMIPISWQEMQCPTTKEKEPRKCAKPV
Sbjct:   12 GRASEYRAGPGTYVRGTYIYASVVGPKLEQAAA-DEDGKPYLIVSQPKRARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 190          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A835YI70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI70_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.980e-67
Identity = 107/180 (59.44%), Postives = 138/180 (76.67%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSA-GSIMIPISWQEMQCPTTKEKEPRKCAKP 194
            GR +E+ +GPGTY RG +I+AS++GP  +Q+   GG   P + V   R A+  DQVI+VGD+VMARVTR+    ASVEI+C GETVLRE + GI+KKED+RATE+D+  +  S RPGDI+RARV SLGD+  Y+L+TA  +LGVRWAKS A G+IM+P+SWQEMQCP T  +EPRKCA+P
Sbjct:   14 GRASEFTSGPGTYTRGPHIFASLVGPVLQQEGAEGG--LPVITVRGGRNAQ--DQVIEVGDVVMARVTRVRALLASVEILCAGETVLREAYNGIIKKEDVRATEVDRVDMGQSFRPGDIVRARVSSLGDARQYYLTTAAPDLGVRWAKSDASGAIMVPVSWQEMQCPVTGVREPRKCARP 189          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: H6WBA8_VAULI (S1 motif domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA8_VAULI)

HSP 1 Score: 177 bits (450), Expect = 2.450e-53
Identity = 88/179 (49.16%), Postives = 127/179 (70.95%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKP 194
            GR +EY +G GTYVRG +IY+S++G  ++ +     ++ P + V    +     Q+++VG +VM RVTR+    ASV+I+C G+ VLRE  +GI++KED+R+TE+DK  +    RPGDI+R +VISLG+S  YFLST+  +LGV WA+S AG +++PISW++MQCP TK  E RKCAKP
Sbjct:   12 GRCDEYTSGNGTYVRGPHIYSSLVGRIQKIEVP---ENLPVLTVK--GKKAVVGQILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKEDVRSTEVDKVDMWKCFRPGDIVRTKVISLGNSRDYFLSTSGEDLGVSWARSEAGEVLVPISWEQMQCPKTKAVEFRKCAKP 185          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A2P6NTR0_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NTR0_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 3.240e-50
Identity = 89/178 (50.00%), Postives = 121/178 (67.98%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAK 193
            G  + + +G GTY+ G Y++ASV+G +EE     GG  K  + V   ++ +    V  +  IV ARVTR++ R  +V I+CVG+ VLREP  G+++++D+RATEIDK ++    RPGDI+ A VISLGDS  YFLSTA+NELGV +AKS AG+ M+P SW+ M CP TK KE RK AK
Sbjct:   16 GHTDTFESGEGTYILGNYVHASVIGAREETAGKDGG--KTLLSV---KKEKEPSIVPDIKSIVTARVTRVNPRFVNVSILCVGDRVLREPFAGMIRQQDVRATEIDKVEIYKCFRPGDIVLAEVISLGDSRSYFLSTAKNELGVIFAKSVAGATMVPTSWESMMCPKTKTKEFRKVAK 188          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A4P9XTZ4_9FUNG (S1 motif domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XTZ4_9FUNG)

HSP 1 Score: 169 bits (427), Expect = 6.990e-50
Identity = 91/180 (50.56%), Postives = 124/180 (68.89%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 195
            GR ++YR GPGTYVR + I+AS++G +E   A   G+  P + V+   R R    + QV  IV  +V R++ R A+V I+ VG T  R+  +GI++ +D+RATE DK ++    RPGD++RA+VISLGD+  Y+LSTA+NELGV +A+S AG  MIPISWQEMQC  TK  E RKCAKP+
Sbjct:   14 GREHQYRTGPGTYVRNSVIHASIVGTREIHSAAEEGE-LPTISVT---RGREQTTLPQVDSIVTGKVLRVNPRFATVAIMAVGPTACRDEFQGIIRVQDVRATEKDKVKIYHCFRPGDVVRAQVISLGDARSYYLSTAQNELGVIFARSVAGVPMIPISWQEMQCTKTKTVELRKCAKPM 189          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: D8S0J7_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S0J7_SELML)

HSP 1 Score: 169 bits (427), Expect = 8.930e-50
Identity = 89/181 (49.17%), Postives = 121/181 (66.85%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDD-KPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 195
            G  +E+ AG G+Y     IYAS++G +   +A  G DD +P + +   RR +  D V + G  V A++T++  R AS +I+CVG   ++E   GIV+++D+R TEIDK  +  S RPGDIIRA VISLGDS  Y+LSTA+NELGV  A S AG+ M+ +SWQEMQCP T ++EPRK AK V
Sbjct:   16 GLASEFNAGRGSYCHDGKIYASLVGIRHLIEAKQGSDDLRPTIEI---RREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVRQQDVRLTEIDKVDMHSSFRPGDIIRAEVISLGDSRAYYLSTAKNELGVVSAVSVAGATMVAVSWQEMQCPLTNQREPRKVAKVV 193          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A1Y1I354_KLENI (Exosome complex component CSL4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I354_KLENI)

HSP 1 Score: 167 bits (424), Expect = 2.250e-49
Identity = 86/178 (48.31%), Postives = 121/178 (67.98%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAK 193
            GRV+EY +G GT+VRG +I AS++G +       G  DK  + V +    +    V + G  V A+V RI  R+A+ +I+CVG   + +   GI++++D+RATEIDK ++A S RPGDI+RA V+SLGD+  Y+LSTA+NELGV +AKS AG  M+P+SW++MQCP TK  E RK AK
Sbjct:   15 GRVSEYTSGRGTHVRGDHICASIVGQQSISAPAAGASDKAQLPVIEVINGKERSAVPETGSTVTAKVVRIDHRKATADILCVGLRAVTQKFTGIIRQQDVRATEIDKVEIATSFRPGDIVRAEVLSLGDARAYYLSTAKNELGVVFAKSPAGVRMVPVSWEKMQCPKTKVIELRKVAK 192          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A2R6WRL8_MARPO (S1 motif domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WRL8_MARPO)

HSP 1 Score: 167 bits (422), Expect = 4.240e-49
Identity = 89/181 (49.17%), Postives = 123/181 (67.96%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGP-KEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 195
            G  +EY AGPGTYV    +YASV+G  +    A    D +P + V++ +   A   V + G +V A++T++  RQA+  I+CVG   +R+   GI++++D+RATEIDK  +  S RPGDI+RA VISLGDS  Y+LSTA+NELGV  A S AG+ M+P+SWQEMQCP T ++EPRK AK +
Sbjct:   14 GWASEYVAGPGTYVWHEKVYASVVGLLRLTPAATDVEDQRPTIEVTREKERGA---VPEPGTVVTAKITKLFPRQAAASIVCVGPRAVRDKFTGIIRQQDVRATEIDKVDMHTSFRPGDIVRAEVISLGDSRAYYLSTAKNELGVVSATSDAGAAMVPVSWQEMQCPITGQREPRKVAKVI 191          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: W7U6U4_9STRA (3-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.400e-48
Identity = 89/194 (45.88%), Postives = 128/194 (65.98%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPGGDDKPFVMVSQPRRARAT-----DQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSA----------GSIMIPISWQEMQCPTTKEKEPRKCAKP 194
            GR++ +++GPGTY++G +IYAS+LG  +  Q +  GD  P + VS P +A A      + V+ VG +V  RV RI+++QA VEI+ +G  VLR+  +GI+KKED+   +ID+ ++    RPGDI+RARV+SLGDS  Y+L TAE+ELGV +A+S            G +M+P+SW+ M  P TK  EPRK AKP
Sbjct:   22 GRISSHQSGPGTYIKGGHIYASILGNIQILQPEKEGD-LPMLRVSNPYKADADHAGAQNVVLAVGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGDIVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLTKATEPRKVAKP 214          
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Match: A0A176WMU3_MARPO (S1 motif domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WMU3_MARPO)

HSP 1 Score: 167 bits (424), Expect = 2.460e-48
Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = 0
Query:   16 GRVNEYRAGPGTYVRGAYIYASVLGP-KEEQQADPGGDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGETVLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFLSTAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV 195
            G  +EY AGPGTYV    +YASV+G  +    A    D +P + V++ +   A   V + G +V A++T++  RQA+  I+CVG   +R+   GI++++D+RATEIDK  +  S RPGDI+RA VISLGDS  Y+LSTA+NELGV  A S AG+ M+P+SWQEMQCP T ++EPRK AK V
Sbjct:   14 GWASEYVAGPGTYVWHEKVYASVVGLLRLTPAATDVEDQRPTIEVTREKERGA---VPEPGTVVTAKITKLFPRQAAASIVCVGPRAVRDKFTGIIRQQDVRATEIDKVDMHTSFRPGDIVRAEVISLGDSRAYYLSTAKNELGVVSATSDAGAAMVPVSWQEMQCPITGQREPRKVAKEV 191          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1131.32.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF37_ECTSI1.880e-10285.56S1 motif domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YI70_9STRA1.980e-6759.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H6WBA8_VAULI2.450e-5349.16S1 motif domain-containing protein n=1 Tax=Vaucher... [more]
A0A2P6NTR0_9EUKA3.240e-5050.00Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A4P9XTZ4_9FUNG6.990e-5050.56S1 motif domain-containing protein n=1 Tax=Thamnoc... [more]
D8S0J7_SELML8.930e-5049.17Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A1Y1I354_KLENI2.250e-4948.31Exosome complex component CSL4 n=1 Tax=Klebsormidi... [more]
A0A2R6WRL8_MARPO4.240e-4949.17S1 motif domain-containing protein n=1 Tax=Marchan... [more]
W7U6U4_9STRA1.400e-4845.883-5 exoribonuclease csl4 n=1 Tax=Nannochloropsis g... [more]
A0A176WMU3_MARPO2.460e-4849.72S1 motif domain-containing protein n=1 Tax=Marchan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 19..42
e-value: 9.4E-7
score: 28.5
IPR019495Exosome complex component CSL4, C-terminalPFAMPF10447EXOSC1coord: 73..99
e-value: 7.7E-5
score: 23.3
coord: 103..142
e-value: 9.7E-9
score: 35.8
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 65..195
e-value: 5.1E-51
score: 173.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 71..191
NoneNo IPR availableGENE3D2.40.50.100coord: 16..59
e-value: 9.5E-8
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableCDDcd05791S1_CSL4coord: 74..159
e-value: 9.01474E-41
score: 131.599
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 17..45
IPR039771Exosome complex component Csl4PANTHERPTHR126863'-5' EXORIBONUCLEASE CSL4-RELATEDcoord: 19..195
IPR003029S1 domainPROSITEPS50126S1coord: 75..153
score: 8.771838

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1131contigA-nodosum_M_contig1131:219488..226430 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1131.32.1mRNA_A-nodosum_M_contig1131.32.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1131 219242..226462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1131.32.1 ID=prot_A-nodosum_M_contig1131.32.1|Name=mRNA_A-nodosum_M_contig1131.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=196bp
MKSSGRSHKEERGKPGRVNEYRAGPGTYVRGAYIYASVLGPKEEQQADPG
GDDKPFVMVSQPRRARATDQVIQVGDIVMARVTRISTRQASVEIICVGET
VLREPHRGIVKKEDIRATEIDKAQVALSLRPGDIIRARVISLGDSTHYFL
STAENELGVRWAKSSAGSIMIPISWQEMQCPTTKEKEPRKCAKPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR019495EXOSC1_C
IPR012340NA-bd_OB-fold
IPR039771Csl4
IPR003029S1_domain