mRNA_A-nodosum_M_contig113.41.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 308 bits (790), Expect = 1.910e-88 Identity = 158/319 (49.53%), Postives = 188/319 (58.93%), Query Frame = 3
Query: 1194 CSNGFSGFEDTVNFVCCDAACGLCGGPGC--GNVPGLTGNECCSETIATNGTLCSVAGEAPCILEIPEVTSNSTCSNGLPGFEDTVNFVCCDVACG-LCGGPGCGNVPGLTGNDCCSETIATNGTSCSVAGEAPCILELPEVTSNSTCSNGLSGFEDTVNFVCCDVACGLCGGPGCGNVPGLSGDDCCSGTIATNGTLCSVTGAAPCIIDPPEVTPSMCPNGLAGVQDGNVCCAEACNGVXXXXXXXXXXXXXXSSDCCSAIILEGGVFCVDGVDAPCIMVNGTFTPAPSFTTAMPTITPREVM-FTAAPTVEGQTEAP 2138
CSNG G + T VCC C +CGG C N LT +CC+ I +GT C V+ APCI+ ++S C NG G D VCC + CG CGG GCG++PG+ CCS I +G CS APC++ E +++TCSNG+ G ED VN +CCD ACGLCGGPGCGNV GL+G DCCS IA LCSVT APC++DPP+ S CPNGLAGVQDG+VCCAE CNGV + DCCS IL GV C +GV APCIM+NGT+T AP A PT P T AP TEAP
Sbjct: 30 CSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPM---AAPTFPPAAAPGTTVAPGAVAATEAP 345
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 330 bits (847), Expect = 4.580e-88 Identity = 252/773 (32.60%), Postives = 304/773 (39.33%), Query Frame = 3
Query: 141 ACCVEECGLCGGSGCAEVGGVNSTLTANDCCSSEILESDVFCVDTGVAPCILTADVTGDFNSTCSNDLPGFEDTVNLVCCDVACGLCGGSGCGNVVGLTGNDC-CSETIATNGTLCSVAGEAPCIIDLPEVTSNNTCSNGFSGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGSD-CCSSTISTTGTLCSVAGEAPCILELPDVTTNNTCSNDFPGFEDSVNGVCCDAACGLCGGAGCGNV-PGLTGNDCCSETIANNGTLCSLAGEAPCILD--LPEVTS-----------------------------------------NSTCSNGFPGFEDTVNFVCCDVGCGLCGGPGCGNVR-GLTGNDCCSETIATNGTLCSVAGEAPCILELPD-------------------------------VTSNDTCSNGFSGFEDTVNFVCCDAACGLCGGPGCGNV-PGLTGNECCSETIATNGTLCSVAGEAPCILE--IPEVTS-----------------------------NSTCSNGLPGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGND-CCSETIATNGTSCSVAGEAPCILELPEVTSNSTCSNGLSGFEDTVNFVCCDVACGLCGGPGCGNVPG-LSGDDCCSGTIATNGTLCSVTGAAPCIID-------------------------PPEV----------TPSMCPNGLAGVQDGNVCCAEACNGVXXXXXXXXXXXXXXSSDCCSAIILEGGVFCVDGVDAPC 2018
ACC+ ECG CGG C +GG L A +CC S I+E C APC + ++ G V CC CG C I G +CS+A EAPC ++ + CSNGF G + CC CG CGG C + G G++ CC S I G LCS+A EAPC LE +TCSN FPG + CC A CG CGG+ C GL +CC I +G LCS+A EAPC LD PE TS CSNGFPG + CC CG CGG C GL +CC I G LCS+A EAPC L+ P D CSNG G + CC A CG CGG C GL CC I G LCS+A EAPC L+ PE T TCSNG+PG + CC CG CGG C G G D CC I +G CS+A EAPC L+ CS+G+ G CC CG CGG GC G L D+CC G I +G LCS+T APC++D PP + P MC NG+ G+Q G+ CC C G + +CC + I+E G C ++APC
Sbjct: 255 ACCLAECGGCGGLDCDALGG---GLGAENCCESRIVEHGELCSIALEAPCYIDGEMNG----------------VGNACCLAECGXXXXXXXXXXXXXXXXXXXCESDIVERGEICSIALEAPCYLE-------DMCSNGFPGIQS--GNACCLAECGGCGGSDCDALGGGLGAENCCESDIVERGELCSIALEAPCYLE-------DTCSNGFPGIQSG--NACCLAECGGCGGSDCDQFGDGLGAENCCESDIVEHGELCSIALEAPCYLDEPTPEPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDLCSNGFPGIQS--GNACCLAECGGCGGSDCDQFGDGLGAENCCESDIVDYGELCSIALEAPCYLDEPTPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDLCSNGIPGIQS--GNACCLAECGGCGGSDCDQFGDGLGAENCCESDIVDYGELCSIALEAPCYLDEPTPEPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTDTCSNGMPGIQS--GNACCLAECGACGGSDCDAFGGGLGADNCCESDIVEHGELCSIALEAPCYLD-------DVCSDGIPGIRS--GNACCLAECGACGGSGCDEFGGGLGADNCCEGNIEEHGELCSITLEAPCVVDGRLVADTVPCPSCLMVCLSEHGLTLPPSLFRISSRYSSLPPDMCSNGIPGIQSGSACCLAEC-GACGGLDCDEFGGGLGADNCCVSDIVEHGELCSIALEAPC 974
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 298 bits (763), Expect = 1.190e-85 Identity = 170/336 (50.60%), Postives = 205/336 (61.01%), Query Frame = 3
Query: 1158 ILELPDVTSNDTCSNGFSGFEDTVNFVCCDAACGLCGGPGC--GNVPGLTGNECCSETIATNGTLCSVAGEAPCILEIPEVTSNSTCSNGLPGFEDTVNFVCCDVACG-LCGGPGCGNVPGLTGNDCCSETIATNGTSCSVAGEAPCILELPEVTSNSTCSNGLSGFEDTVNFVCCDVACGLCGGPGCGNVPGLSGDDCCSGTIATNGTLCSVTGAAPCIIDPPEVTPSMCPNGLAGVQDGNVCCAEACNGVXXXXXXXXXXXXXXSSDCCSAIILEGGVFCVDGVDAPCIMVNGTFTPAPSF------TTAMPTITPREVMFTAAPTVEGQTEAP 2138
+L L TC+ G SG E T VCC CG CGG GC N LT N+CC+ I+ +G +CS G APCIL +++S C NG G +D VCC + CG CGG GCG +PG+ + CC+ I +G C EAPC ++ ++S CSNG G E+ VCCD AC +CGG CGNV GL+G DCC+GTI N LCS G+APC++DPPEVT S C NGLAGV G+VCCAE CNGVXXXXXXXXXXX + DCCSA IL + CVD APC+MV GTFTPAP+ TT P + P E + T APT QT AP
Sbjct: 13 VLALAGSVGAQTCAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPC-TQVAVAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVD--TAPCVMVEGTFTPAPAVVPTVAATTTAP-LAPGETV-TMAPTPTSQTAAP 343
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 318 bits (815), Expect = 5.220e-84 Identity = 272/927 (29.34%), Postives = 337/927 (36.35%), Query Frame = 3
Query: 96 VCTGGIAGVEAVSQPACCVEECGLCGGSGCAEVGGVNSTLTANDCCSSEILESDVFCVDTGVAPCILTADVTGDFNSTCSNDLPGFEDTVNLVCCDVACGLCGGSGCGNVVGLTGND-CCSETIATNGTLCSVAGEAPCIID--LPEVTS-----------------------------------------------------NNTCSNGFSGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGSD-CCSSTISTTGTLCSVAGEAPCILELPD---------------------------------------------------------------VTTNNTCSNDFPGFEDSVNGVCCDAACGLCGGAGCGNVPGLTGND-CCSETIANNGTLCSLAGEAPCILD------LPEVTS-------------------------------NSTCSNGFPGFEDTVNFVCCDVGCGLCGGPGCGNVRGLTGND-CCSETIATNGTLCSVAGEAPCILE--------LPDVTS----------------------NDTCSNGFSGFEDTVNFVCCDAACGLCGGPGCGNVPG-LTGNECCSETIATNGTLCSVAGEAPCILEIPEVTSNSTCSNGLPGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGND-CCSETIATNGTSCSVAGEAPCILE----LPEVTSNST---------------------------------CSNGLSGFEDTVNFVCCDVACGLCGGPGCGNV-PGLSGDDCCSGTIATNGTLCSVTGAAPCIIDPPEVTPS--------------------------------------MCPNGLAGVQDGNVCCAEACNGVXXXXXXXXXXXXXXSSDCCSAIILEGGVFCVDGVDAPCIMVNGTFTPAPSFTTAMPT 2075
VC+ G G+E S ACC+ ECG CGGS C +GG L A +CC S+I+E C APC L CSN PG + CC CG CGGS C + G G D CC I G LCS+A EAPC ++ PE T +TCSNGF G + CC CG CGG C + G G++ CC S I G LCS+A EAPC ++ P CSN FPG + CC A CG CGG+ C G G D CC I +G LCS+A EAPC +D P V CSNG PG + F CC C CGG GC G G D CC I NG LCS+ +APC+++ + + T+ D CSNGF G + CC A CG CGG C G L + CC I +G LCS+A EAPC ++ TCSNG+PG + CC CG CGG C G G D CC I +G CS+A APC ++ P + T CSNG+ G + V+ CC CG CGG C GL D+CC I G LCS+ APC++D PS C NG+ G+Q N CC C G + +CC + I+E G C ++APC + + P+P AMPT
Sbjct: 459 VCSNGFPGIE--SGNACCLAECGGCGGSDCDALGG---GLGAENCCESDIVEHGELCSVALEAPCYL--------EDVCSNGFPGIQS--GNACCLAECGGCGGSDCDALGGGLGADNCCESDIVERGELCSIALEAPCYLEEPAPEPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDTCSNGFPGIQS--GNACCLAECGGCGGSDCDALGGGLGAENCCESDIVEHGELCSIALEAPCYIDEPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTGMCSNGFPGIQSG--NACCLAECGACGGSDCDEFGGGLGADNCCESDIVEHGELCSIALEAPCYIDDAAPAPSPVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTDVCSNGIPGVQS--GFACCLAECVACGGSGCDEFGGGLGADNCCEGNIEENGELCSITLQAPCVVDDSAPAPSPVAEPTAXXXXXXXXXXXXXXXXXXXXXXTDMCSNGFPGIQS--GNACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGELCSIALEAPCYID-------ETCSNGIPGIQ--TGNACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGELCSIALAAPCYIDDSSPAPSPVAEPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQSGVS--CCLAECGECGGSDCAEYGDGLGADNCCQSNIEEYGELCSIKLEAPCVVDDSAPAPSPVTMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSDNACCLAEC-GACGGSDCDEFGGGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSP---VAMPT 1347
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 196 bits (498), Expect = 1.130e-47 Identity = 145/401 (36.16%), Postives = 183/401 (45.64%), Query Frame = 3
Query: 744 VTTNNTCSNDFPGFEDSVNGVCCDAACGLCGGAGCGNV-PGLTGNDCCSETIANNGTLCSLAGEAPCILDLPEVTSNSTCSNGFPGFEDTVNF-VCCDVGCGLCGGPGCGNVRGLTGNDCCSETIATNGTLCSVAGEAPCILELPDVTSNDTCSNGFSGFEDTVNFV----CCDAACGLCGGPGCGNVPG-LTGNECCSETIATNGTLCSVAGEAPCILE---------------IPEVTSNSTCSNGLPGFEDTVNFVCCDVACGLCGGPGCGNVPG-LTGNDCCSETIATNGTSCSVAGEAPCILE----------LPEVTSNSTCSNGLSGFEDTVNFVCCDVACGLCGGPGCGNVP-GLSGDDCCSGTIATNGTLCSVTGAAPCIIDPPEVTPSMCP 1844
V TC G CC A C CGG+GC + GLTG DCC+ I G C G APC+L+ E +S + S+G G + + VCC CG CGG GCG+ GLT N+CC+ TIA C G APC+++ + SG + CC A C CGG GC + G LTG +CC+ I+ LCSV G APCI++ + + TC L G CC C CGG GC + G LTG DCC+ I+ CSV G APCI++ + + TC L G CC CG CGG GL+G DCC+ I+ LCSVTGAAPCI+D P+ P
Sbjct: 15 VAKGQTCDGILKGI------YCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAAGKAC---GSAPCLLE--EGSSPTPASSG--GCDGILQGDVCCSAECGTCGGSGCGSRAGLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDISN---LCSVTGAAPCIVDGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGDY------CCSAGCVECGGSGCSDRGGGLTGADCCTSDISNL---CSVTGAAPCIVDGDTSPTXXXXXXXXSGSFTCDGVLKGDY------CCSAGCGECGGXXXXXXXXGLTGADCCTSDISN---LCSVTGAAPCIVDGDSTGPTPTP 378
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.750e-40 Identity = 97/223 (43.50%), Postives = 115/223 (51.57%), Query Frame = 3
Query: 327 TCSNDLPGFEDTVNLVCCDVACGLCGGSGC---GNVVGLTGNDCCSETIATNGTLCSVAGEAPCIID---LPEVTSNNTCSNGFSGFEDTVNFVCCDVACGLCGGPGC---GNVPGLTGSDCCSSTISTTGTLCSVAGEAPCIL---ELPDVTTNNTCSNDFPGFEDSVNGV-CCDAACGLCGGAGC---GNVPGLTGNDCCSETIANNGTLCSLAGEAPCIL 947
TCSN L G D +VCC +ACG CGG+GC G GL G+ CC + + C EAPCII P TS NTCSNG G + VCC + CG CGG GC G GL GS CC +I +G C +APCI+ P T + TCSN G + NGV CC CG CGGAGC G GL + CC +I + C EAPCI+
Sbjct: 192 TCSNGLEGI-DANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGIDGN-GVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGIDG--NGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 157 bits (398), Expect = 5.850e-40 Identity = 80/185 (43.24%), Postives = 108/185 (58.38%), Query Frame = 3
Query: 66 IVSTLTSVGAVCTGGIAGVEAVSQPACCVEECGLCGGSGCAEVGGVNSTLTANDCCSSEILESDVFCVDTGVAPCILTADVTGDFNSTCSNDLPGFEDTVNLVCCDVACG-LCGGSGCGNVVGLTGNDCCSETIATNGTLCSVAGEAPCIIDLPEVTSNNTCSNGFSGFEDTVNFVCCDVACGLC 617
+V T+T GAVC+ G+ G+++ S ACCVEECGLCGG GC S+LT+ DCC++EI+ES C + APCI+T + +S C N G +D VCC + CG CGG GCG++ G+ CCS I +G +CS APC++ E ++ TCSNG G ED VN + C C
Sbjct: 19 LVGTMTPAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPAN--TSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASN-DSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLIWYVWMCSAC 200
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.080e-33 Identity = 134/499 (26.85%), Postives = 164/499 (32.87%), Query Frame = 3
Query: 492 AGEAPCIIDLPEVTSNNTCSNGFSGFEDTVNFVCCDVACGLCGGPGCGNV--PGLTGSDCCSSTISTTGTLCSVAGEAPCILELPDVTT------------------------------NNTCSNDFPGFEDSVNGVCCDAACGLCGGAGCGNVPGLTGND-CCSETIANNGTLCSLAGEAPCILDLPEVTSNSTCSNGFPGFEDTVNFVCCDVGCGLCGGPGCGNVRGLTGNDCCSETIATNGTLCSVAGEA------------------PCILELPDVTSND---TCSNGFSGFEDTVNFVCCDAACGLCGGPGCGNV--PGLTGNECCSETIATNGTLCSVAGEAPCIL-EIPEVTSNSTCSNGLPGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGNDCCSETIATNGTSCSVAGEAPCILELPEVTSNSTCSNGLSGFEDTVNFVCCDVACGLCGGPGCGNVPG-LSGDDCCSGTIATNGTLCSVTGAAPCIID 1814
+ E P + EV CS G G E + VCC + C CGG GC V P CC S + + G CSV+ EAPC+L+ P + CSN PG + + CC A CG CGG+GC G G D CC+ I G LCS+A APC +D P T + P E+P + D CS G G E + VCC C CGG GC V P CC + + G CSV+ EAPC+L E P N+ S CSNG+ G + + CC CG CGGPGC G L D+CC G I G LCSVT AAPCI+D
Sbjct: 329 SSEMPVMAPTDEVI---VCSTGIPGIESSDGAVCCPINCTQCGGAGCATVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDAPATEMPAMAPTPEXXXXXXXXXXXXXXXXXXXXXXGDVCSNGIPGIQSGDS--CCLAECGACGGSGCAEFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVDAPPPTPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPAPSEMPVMAPTDEVVVCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDETPTPEPNAAPXXXXXXXXXXXXXXXXXXXXXXX-----------------------------XXXXXXXXXXXXXXXSGDVCSNGIPGIQSGIT--CCLAECGECGGPGCAEFGGGLGQDNCCQGRIEEYGELCSVTLAAPCIVD 791
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 150 bits (379), Expect = 2.690e-33 Identity = 122/415 (29.40%), Postives = 150/415 (36.14%), Query Frame = 3
Query: 759 TCSNDFPGFEDSVNGV-CCDAACGLCGGAGCG---NVPGLTGNDCCSETIANNGTLCSLAGEAPCIL----DLPEVTSNS-----TCSNGFPGFEDTVNFVCCDVGCGLCGGPGCG---NVRGLTGNDCCSETIATNGTLCSVAGEAPCIL----ELPDVTSND-----TCSNGFSGFEDTVNFVCCDAACGLCGGPGCG---NVPGLTGNECCSETIATNGTLCSVAGEAPCIL----EIPEVTSNST-----------------------------CSNGLPGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGNDCCSETIATNGTSCSVAGEAPCILELPEVTSNSTCSNGLSGFEDTVNFVCCDVACGLCGGPGCGNVP---GLSGDDCCSGTIATNGTLCSVTGAAPCII 1811
TCS+ G + NGV CC CG C G GCG + GL CC + + G C EAPCI+ D +V S S TCS+G G + VCC +GCG C G GCG + GL CC + + G C EAPCI+ + DV S TCS+G G + VCC CG C G GCG + GL CC + + G C EAPCI+ + ++ S S TCSNG+ G D VCC +ACG CGG GCG+ GL G CCS + C T AAPCII
Sbjct: 337 TCSDGTEGIDG--NGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGIDGN-GVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGIDGN-GVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDIDSESADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQTCSNGIEGI-DHKGEVCCPLACGQCGGSGCGSAGSANGLDGASCCSSEVLAGNVYCEDTNAAPCII 746
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 145 bits (366), Expect = 2.040e-31 Identity = 120/414 (28.99%), Postives = 165/414 (39.86%), Query Frame = 3
Query: 411 GCGNVVGLTGNDCCSETIATNGTLCSVAGEAPCIIDLPEVTSNNTCSNGFSGFEDTVNFVCCDVACGLCGGPGCGNVPGLTGSDCCSSTISTTGTLCSVAGEAPCIL----ELPDVTTNNTCSNDFPGFED------------SVNGV-----CCDAACGLCGGAGCGNVPGLTGNDCCSETIANNGTLCSLAGEAPCILDLPEVT---------------------------------SNSTCSNGFPGFEDTVNFV------------------CCDVGCGLCGGPGCGNVRGLTGNDCCSETIATNGTLCSVAGEAPCILE--LPDVTSN-----DT-----------CSNGFSGFEDTVNFVCCDAACGLCGGPGCGNVPGLTGNECCSETIATNGTLCSVAGEAPCILE 1382
GCG+ GLT DCC+ TI + LCSV EAPC+ID E ++ TCSNG + + +CC CG CGG GC GL+G +CC+STI+ C APC++ +L D T S GV CC+A CG CGG CC+ A + LCS G++PC++D S ST + DT + + CC+ GCG CGG G CC+ A + LCSV G++PC+++ +P T++ DT S S + CC+A CG CGG + CC+ A + LCS G +PC++E
Sbjct: 16 GCGSRPGLTKYDCCTSTIKADNHLCSVTQEAPCVID-EETEADPTCSNGVAKGD-----ICCSAGCGYCGGSGCSGRGGLSGDECCTSTIAAANKSCDDQS-APCVMSGGSDLGDTAGQTTXXXXXXXXXXXXXXXXXXSTATSCGGVAKGAFCCNAGCGTCGGT----XXXXXXEGCCTSDAAES--LCSATGKSPCLMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASTATTITDTTTDTTSGISVADATATSCDGVSKGAYCCNAGCGTCGGX----XXXXXGEGCCTSDAALS--LCSVTGKSPCLMDSAIPATTTDIIDNTDTTXXXXXXXXXVASTATSCGGVASGYYCCNAGCGTCGG----TXXXXXXDGCCASDAALS--LCSATGMSPCLME 404 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig113.41.1 >prot_A-nodosum_M_contig113.41.1 ID=prot_A-nodosum_M_contig113.41.1|Name=mRNA_A-nodosum_M_contig113.41.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=792bp MNVATILRTSLVIVSTLTSVGAVCTGGIAGVEAVSQPACCVEECGLCGGSback to top mRNA from alignment at A-nodosum_M_contig113:450156..468409+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig113.41.1 ID=mRNA_A-nodosum_M_contig113.41.1|Name=mRNA_A-nodosum_M_contig113.41.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=18254bp|location=Sequence derived from alignment at A-nodosum_M_contig113:450156..468409+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig113:450156..468409+ >mRNA_A-nodosum_M_contig113.41.1 ID=mRNA_A-nodosum_M_contig113.41.1|Name=mRNA_A-nodosum_M_contig113.41.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2376bp|location=Sequence derived from alignment at A-nodosum_M_contig113:450156..468409+ (Ascophyllum nodosum dioecious)back to top |