mRNA_A-nodosum_M_contig1113.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1113.28.1
Unique NamemRNA_A-nodosum_M_contig1113.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1113.28.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.900e-43
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 LRTVLRRPVAPLAVT-RRNMSGDAEHAAEEMSKWKKMSAGMGVLTVIVTAYVVATEEHHHKDEDAPVPSHLQIRNKPFPWTCAGCSLLDLECFKKCKEDR 297
            +R  +RRP A  A + RR+MSGDA HAAEEM+KWKKM+AGMGVL++ VT  V+ATEEHHH+DEDAP+PS+++IRNKP PW CA C+LLD  CF KCK +R
Sbjct:    6 VRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAER 105
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1113.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU0_ECTSI2.900e-4366.00Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1113contigA-nodosum_M_contig1113:257466..258682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHU0
PFAMsCOX6A
Model size306
Max annot lvl2759|Eukaryota
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorymitochondrion
Exons3
Evalue4.75e-44
EggNOG OGs2BY4U@1|root,2SBT1@2759|Eukaryota
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Cds size306
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866509.0746071-CDS-A-nodosum_M_contig1113:257465..2575731680866509.0746071-CDS-A-nodosum_M_contig1113:257465..257573Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1113 257466..257573 -
1680866509.0843918-CDS-A-nodosum_M_contig1113:258069..2581851680866509.0843918-CDS-A-nodosum_M_contig1113:258069..258185Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1113 258070..258185 -
1680866509.0936565-CDS-A-nodosum_M_contig1113:258600..2586821680866509.0936565-CDS-A-nodosum_M_contig1113:258600..258682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1113 258601..258682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1113.28.1prot_A-nodosum_M_contig1113.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1113 257466..258682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1113.28.1

>prot_A-nodosum_M_contig1113.28.1 ID=prot_A-nodosum_M_contig1113.28.1|Name=mRNA_A-nodosum_M_contig1113.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
LRTVLRRPVAPLAVTRRNMSGDAEHAAEEMSKWKKMSAGMGVLTVIVTAY
VVATEEHHHKDEDAPVPSHLQIRNKPFPWTCAGCSLLDLECFKKCKEDRG
L*
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mRNA from alignment at A-nodosum_M_contig1113:257466..258682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1113.28.1 ID=mRNA_A-nodosum_M_contig1113.28.1|Name=mRNA_A-nodosum_M_contig1113.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1217bp|location=Sequence derived from alignment at A-nodosum_M_contig1113:257466..258682- (Ascophyllum nodosum dioecious)
CTACGGACGGTGCTCCGACGACCGGTTGCGCCACTTGCCGTTACCCGCCG
CAACATGTCTGGCGATGCCGAGCATGCCGCGGGTGAGCAACGTAGTTATA
GTATATCCGCGGGTTGAGTCACTCGTGTACGGAGCGCTGTGGTATGCACG
CAGAACCCTTGCGATACTGATCTTGTTGTGAAGAGTATTTATTACCGTAC
AATCGCATTGATAACCGCGCAATCCGGCCCTGTCATATCAACCGTTGTTG
TCTGTGTGTGTTTTCTGTATGTGCTTCGTCGTCATTTCGCGGCTAATAAT
GCGGTCGAGCCTAAACGATCGAACGCTAACAAGGGGAATGATGGATCACC
CCCTAACAGCACCTTTTGAAGGCGTTCGCTGAGCTTGTGAGGATGGCCAA
TCTCGCGAACTCACTCTGACCGCCCGACGACGAGATACTTTTAACAAGAC
TGCTCCGGATCCGCCCCCGCGCTGTGGTTTTGGCCCTGGTTTTTCAGAGG
AGATGAGCAAGTGGAAAAAAATGAGTGCAGGGATGGGGGTGCTGACGGTG
ATCGTGACGGCCTACGTCGTCGCCACGGAGGAGCACCACCACAAGGACGA
GGACGCGCCGGTGGTGAGCCTCTCTTGTGACCCCCCTTTGAGTTTCCTAG
AAACTTGTCGGCGTGCGCGCCCTGGGAGTGCGCCGTGATTGAACGACCGG
CCGAGCGGAACGTGTCCTATGACGTACTATTGTAGCAGTACGCCATTTTG
TGTGACCCCGGGAGTTCTGTCGGCGCCATCGGCGGGATGGATCAAGCGCA
GCAATAAATAAGTGCCACAGCGTGTAACATTTGGTGAACCTCACCACAAA
TCGAGGAAAGAGCGCGGGTGGACGCACGTTCCTGTCTACGCCCTTACCAG
ACTAGCCGCTCTTTCCTTCCCACAAGGGCGCGCCACGCCCCTCCCGCGCT
CCCTTCTCTCCTTCTCTTATCCTTTATCTTTATATAACTCCACATTACTC
GCGGATGTCGCCGTCGTGGGGCTTTTACTTGATATCAACTTTCCCCCTTT
TTTTCCCATGCTGTTGTGTGGGGTCTTGCGTGGTGATCCCTGATATTGTT
GCCCCACAGCCCTCGCACTTGCAGATCCGCAACAAACCGTTCCCTTGGAC
TTGCGCTGGATGCTCTCTCCTGGACCTCGAGTGCTTCAAGAAGTGCAAGG
AAGATCGCGGACTATAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1113:257466..258682-

>mRNA_A-nodosum_M_contig1113.28.1 ID=mRNA_A-nodosum_M_contig1113.28.1|Name=mRNA_A-nodosum_M_contig1113.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig1113:257466..258682- (Ascophyllum nodosum dioecious)
CTACGGACGGTGCTCCGACGACCGGTTGCGCCACTTGCCGTTACCCGCCG
CAACATGTCTGGCGATGCCGAGCATGCCGCGGAGGAGATGAGCAAGTGGA
AAAAAATGAGTGCAGGGATGGGGGTGCTGACGGTGATCGTGACGGCCTAC
GTCGTCGCCACGGAGGAGCACCACCACAAGGACGAGGACGCGCCGGTGCC
CTCGCACTTGCAGATCCGCAACAAACCGTTCCCTTGGACTTGCGCTGGAT
GCTCTCTCCTGGACCTCGAGTGCTTCAAGAAGTGCAAGGAAGATCGCGGA
CTATAA
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