prot_A-nodosum_M_contig1113.28.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1113.28.1
Unique Nameprot_A-nodosum_M_contig1113.28.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length102
Homology
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BLAST of mRNA_A-nodosum_M_contig1113.28.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.900e-43
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 0 
Query:    1 LRTVLRRPVAPLAVT-RRNMSGDAEHAAEEMSKWKKMSAGMGVLTVIVTAYVVATEEHHHKDEDAPVPSHLQIRNKPFPWTCAGCSLLDLECFKKCKEDR 99
            +R  +RRP A  A + RR+MSGDA HAAEEM+KWKKM+AGMGVL++ VT  V+ATEEHHH+DEDAP+PS+++IRNKP PW CA C+LLD  CF KCK +R
Sbjct:    6 VRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAER 105
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1113.28.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU0_ECTSI2.900e-4366.00Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10Cytochrome c oxidase, subunit VIacoord: 20..95
e-value: 2.0E-15
score: 58.4
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 20..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1113contigA-nodosum_M_contig1113:257466..258682 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1113.28.1mRNA_A-nodosum_M_contig1113.28.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1113 257466..258682 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1113.28.1 ID=prot_A-nodosum_M_contig1113.28.1|Name=mRNA_A-nodosum_M_contig1113.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
LRTVLRRPVAPLAVTRRNMSGDAEHAAEEMSKWKKMSAGMGVLTVIVTAY
VVATEEHHHKDEDAPVPSHLQIRNKPFPWTCAGCSLLDLECFKKCKEDRG
L*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf