mRNA_A-nodosum_M_contig111.50.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig111.50.1
Unique NamemRNA_A-nodosum_M_contig111.50.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig111.50.1 vs. uniprot
Match: A0A6H5JXW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.280e-9
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3 
Query:  195 NPLVDNEDVLRHAMPFVG-SEGYLYVGGVSTRWRDAW--GDLPRETSLKAAVQSVPRLSLAKDN---------GCR----WDDITFMHVAETGNLDVVRYAR 452
            NPL+D +D+LRH +PFV  +EGYL+V GV++ W  AW  G LP+ T L   V+S  RL+ A            G      WD+      A  G+L  ++YAR
Sbjct:   35 NPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYRAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGSTSGGASTPWVWDESVCRRAAAGGHLGALKYAR 136
[Close]
BLAST of mRNA_A-nodosum_M_contig111.50.1 vs. uniprot
Match: D7FVI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.560e-9
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 3 
Query:  165 PGDTAQSVKINPLVDNEDVLRHAMPFVG-SEGYLYVGGVSTRWRDAW--GDLPRETSLKAAVQSVPRLSLAKDN----GCR-------------WDDITFMHVAETGNLDVVRYAR 452
            P     +++ NPL+D +D+LRH +PFV  +EGYL+V GV++ W  AW  G LP+ T L   V+S  RL+ A       G               WD+      A  G+L  ++YAR
Sbjct:   23 PASAQDTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLGTGGXXXXXXXXXASTPWVWDESVCRRAAAGGHLGALKYAR 138
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig111.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXW6_9PHAE3.280e-939.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVI4_ECTSI3.560e-935.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig111contigA-nodosum_M_contig111:892156..894002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size1847
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.62e-14
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size1221
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866500.0098052-UTR-A-nodosum_M_contig111:892155..8922201680866500.0098052-UTR-A-nodosum_M_contig111:892155..892220Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig111 892156..892220 +
1680866500.0417824-UTR-A-nodosum_M_contig111:893441..8940021680866500.0417824-UTR-A-nodosum_M_contig111:893441..894002Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig111 893442..894002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866500.0237498-CDS-A-nodosum_M_contig111:892220..8934411680866500.0237498-CDS-A-nodosum_M_contig111:892220..893441Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig111 892221..893441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig111.50.1prot_A-nodosum_M_contig111.50.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig111 892221..893441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig111.50.1

>prot_A-nodosum_M_contig111.50.1 ID=prot_A-nodosum_M_contig111.50.1|Name=mRNA_A-nodosum_M_contig111.50.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=407bp
MAMKRSNLDDPRTIPSENNKVFRLPVPEVSSVVPGDTAQSVKINPLVDNE
DVLRHAMPFVGSEGYLYVGGVSTRWRDAWGDLPRETSLKAAVQSVPRLSL
AKDNGCRWDDITFMHVAETGNLDVVRYARAQGCHWDDKACASASVGGHLA
VLKWLRSNGCPWGSHICASAAIGGHLELLQWCRAQGCPWDSTTVEYAAWG
GHLDVCKWARANGCPRDSLACMWAASCGHLDVLKWLKDDGCPWDDGTALA
IAAAGQWEILKWARANGCPWNEATCAQAASSGNLEVLKWCRANGCPWNER
TPSCAARGGFLDILKWCREEGCPWDERVCASAASSGRLDILRWCRENGCP
WNEFTCSSAAAGGHMSILEWCRANGCPWDERTCQKAAAGGHDAVLEWCRA
NGCPET*
back to top

mRNA from alignment at A-nodosum_M_contig111:892156..894002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig111.50.1 ID=mRNA_A-nodosum_M_contig111.50.1|Name=mRNA_A-nodosum_M_contig111.50.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1847bp|location=Sequence derived from alignment at A-nodosum_M_contig111:892156..894002+ (Ascophyllum nodosum dioecious)
AGCAGGTTCTGTCAACTAGCGGGGCTTCGTTTCTTTCTTTCCGTGTCATC
GTCGAGCTCTTGGGAATGGCAATGAAGCGCTCAAATTTGGATGATCCGAG
GACTATCCCTTCGGAGAATAATAAGGTTTTCCGACTTCCTGTTCCAGAGG
TCTCTTCTGTTGTTCCAGGTGACACTGCTCAATCTGTCAAAATCAATCCC
CTCGTGGATAACGAAGACGTGTTACGGCATGCAATGCCGTTTGTCGGTAG
TGAAGGCTACCTCTACGTGGGTGGCGTTTCCACTCGTTGGAGAGACGCCT
GGGGAGATCTCCCCAGGGAGACTTCCTTGAAGGCCGCTGTGCAGTCAGTA
CCACGGCTCTCGTTGGCCAAGGACAACGGGTGTCGATGGGACGACATCAC
ATTCATGCACGTGGCCGAAACAGGGAACCTGGACGTGGTAAGGTACGCTC
GTGCTCAAGGCTGTCATTGGGACGATAAAGCCTGCGCTTCAGCTTCTGTC
GGAGGACATCTCGCCGTGCTGAAATGGCTCAGGTCAAACGGGTGCCCCTG
GGGTAGCCACATTTGCGCGTCGGCCGCCATTGGGGGCCATCTGGAGCTCC
TCCAGTGGTGCCGAGCTCAAGGTTGCCCATGGGACAGCACGACCGTAGAG
TATGCAGCTTGGGGGGGGCATCTCGACGTGTGCAAGTGGGCGAGAGCAAA
CGGTTGCCCTCGGGATTCCCTGGCATGCATGTGGGCTGCGAGCTGTGGGC
ACCTAGATGTACTGAAATGGCTGAAGGACGACGGATGCCCCTGGGACGAC
GGAACGGCGCTGGCGATCGCGGCGGCAGGTCAGTGGGAGATTCTCAAATG
GGCCAGGGCCAACGGCTGCCCGTGGAACGAGGCCACGTGCGCGCAGGCCG
CTAGTTCGGGTAACCTGGAGGTCTTGAAGTGGTGTCGCGCCAACGGTTGT
CCCTGGAATGAGCGCACACCTTCCTGTGCGGCTCGCGGGGGGTTCCTGGA
CATTCTTAAATGGTGTCGGGAGGAGGGCTGCCCTTGGGATGAAAGGGTCT
GCGCGAGTGCCGCCAGCAGCGGTCGTCTAGATATCCTTCGATGGTGCCGC
GAGAACGGCTGCCCGTGGAACGAGTTCACCTGCTCCAGCGCGGCTGCCGG
AGGGCATATGAGCATTCTGGAGTGGTGTCGGGCGAACGGCTGCCCGTGGG
ATGAACGCACCTGCCAAAAGGCGGCTGCAGGAGGGCACGATGCTGTGTTG
GAGTGGTGCAGGGCCAACGGGTGCCCAGAGACCTAAGTTAGTGAGTCTCG
ACTAACTGTGCGGTGGGTAGCTTTGCATCCTATTTAGTCTTGATTGGATC
AGCAGGATTCGCCGTCCGTTTGTATATCTTCTCCCGTTGTTAGCGGTTGC
CGCTCGGGCCCCTGGTAGTAGTAAAGTCTGCAGTAAACAGTGTTTTGATG
AAATAAAGAACGAACTTTTTTTTTTTTAAGAATGAATTTCTAGTAATAAA
TTTTAGACCGAGAAGATGTTATTTCATGGAGCTCACGTCTTTCCACGAGG
TATAAAGGCTTACCCACAGGAACAATGCAATACCTTGGTCAAGGCCATCG
ACCAGCTCCCGTTACTGCAAAACTAAGCGTTTTTCTCAAGAGAAAAATCG
ATTCCTGGCAACAGTACTGACTTTTCTGGACTTCGCTTGAAATCGCTGTA
ACTCTTAATTGACAGATGACATTTTTTTATTTTTTGTTTACGTGATAGCA
TCGATAAGCGCTTTCGTTTGAGCCGCCGGCGAGCCGAATCGGCGAGGTGG
TTCAAAATTTAAGATTTCAAATGGGTCTCGTTCTTAAAAAAAAAAAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig111:892156..894002+

>mRNA_A-nodosum_M_contig111.50.1 ID=mRNA_A-nodosum_M_contig111.50.1|Name=mRNA_A-nodosum_M_contig111.50.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1221bp|location=Sequence derived from alignment at A-nodosum_M_contig111:892156..894002+ (Ascophyllum nodosum dioecious)
ATGGCAATGAAGCGCTCAAATTTGGATGATCCGAGGACTATCCCTTCGGA
GAATAATAAGGTTTTCCGACTTCCTGTTCCAGAGGTCTCTTCTGTTGTTC
CAGGTGACACTGCTCAATCTGTCAAAATCAATCCCCTCGTGGATAACGAA
GACGTGTTACGGCATGCAATGCCGTTTGTCGGTAGTGAAGGCTACCTCTA
CGTGGGTGGCGTTTCCACTCGTTGGAGAGACGCCTGGGGAGATCTCCCCA
GGGAGACTTCCTTGAAGGCCGCTGTGCAGTCAGTACCACGGCTCTCGTTG
GCCAAGGACAACGGGTGTCGATGGGACGACATCACATTCATGCACGTGGC
CGAAACAGGGAACCTGGACGTGGTAAGGTACGCTCGTGCTCAAGGCTGTC
ATTGGGACGATAAAGCCTGCGCTTCAGCTTCTGTCGGAGGACATCTCGCC
GTGCTGAAATGGCTCAGGTCAAACGGGTGCCCCTGGGGTAGCCACATTTG
CGCGTCGGCCGCCATTGGGGGCCATCTGGAGCTCCTCCAGTGGTGCCGAG
CTCAAGGTTGCCCATGGGACAGCACGACCGTAGAGTATGCAGCTTGGGGG
GGGCATCTCGACGTGTGCAAGTGGGCGAGAGCAAACGGTTGCCCTCGGGA
TTCCCTGGCATGCATGTGGGCTGCGAGCTGTGGGCACCTAGATGTACTGA
AATGGCTGAAGGACGACGGATGCCCCTGGGACGACGGAACGGCGCTGGCG
ATCGCGGCGGCAGGTCAGTGGGAGATTCTCAAATGGGCCAGGGCCAACGG
CTGCCCGTGGAACGAGGCCACGTGCGCGCAGGCCGCTAGTTCGGGTAACC
TGGAGGTCTTGAAGTGGTGTCGCGCCAACGGTTGTCCCTGGAATGAGCGC
ACACCTTCCTGTGCGGCTCGCGGGGGGTTCCTGGACATTCTTAAATGGTG
TCGGGAGGAGGGCTGCCCTTGGGATGAAAGGGTCTGCGCGAGTGCCGCCA
GCAGCGGTCGTCTAGATATCCTTCGATGGTGCCGCGAGAACGGCTGCCCG
TGGAACGAGTTCACCTGCTCCAGCGCGGCTGCCGGAGGGCATATGAGCAT
TCTGGAGTGGTGTCGGGCGAACGGCTGCCCGTGGGATGAACGCACCTGCC
AAAAGGCGGCTGCAGGAGGGCACGATGCTGTGTTGGAGTGGTGCAGGGCC
AACGGGTGCCCAGAGACCTAA
back to top