mRNA_A-nodosum_M_contig1095.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1095.16.1
Unique NamemRNA_A-nodosum_M_contig1095.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1095.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1095contigA-nodosum_M_contig1095:230068..231804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNX8
PFAMsCHAT,FHA,NACHT,SH2
Model size1506
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.99e-23
EggNOG OGs28NM8@1|root,2QV6X@2759|Eukaryota
Cds size705
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.4919455-UTR-A-nodosum_M_contig1095:230067..2303181680866479.4919455-UTR-A-nodosum_M_contig1095:230067..230318Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1095 230068..230318 -
1680866479.5048656-UTR-A-nodosum_M_contig1095:230333..2307881680866479.5048656-UTR-A-nodosum_M_contig1095:230333..230788Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1095 230334..230788 -
1680866479.5385244-UTR-A-nodosum_M_contig1095:231709..2318041680866479.5385244-UTR-A-nodosum_M_contig1095:231709..231804Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1095 231710..231804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.5175667-CDS-A-nodosum_M_contig1095:230788..2310221680866479.5175667-CDS-A-nodosum_M_contig1095:230788..231022Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 230789..231022 -
1680866479.5285523-CDS-A-nodosum_M_contig1095:231238..2317091680866479.5285523-CDS-A-nodosum_M_contig1095:231238..231709Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 231239..231709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1095.16.1prot_A-nodosum_M_contig1095.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1095 230789..231709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1095.16.1

>prot_A-nodosum_M_contig1095.16.1 ID=prot_A-nodosum_M_contig1095.16.1|Name=mRNA_A-nodosum_M_contig1095.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=235bp
MDTRGNVRYSSSEASRGGGSHGLGHGCHSSFKPRLLGRDEQSFVLEFLRS
CGPDRAGHRRGTRSGGSDMIRECAYDNADDTISLEMFVEFCRWWEPVTNT
LSLMLDEWASVDPVKVQGFMGGKEAERLLLKKRLPGVFLLRFSKSSPERL
VLTYTCKASQDMSSGQARKNGSKGCPVVITRSYVTVRPDGWWTLHYGKGM
EGISYPSLRDLVNSKVHLLTLYPSSAKGDAFETS*
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mRNA from alignment at A-nodosum_M_contig1095:230068..231804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1095.16.1 ID=mRNA_A-nodosum_M_contig1095.16.1|Name=mRNA_A-nodosum_M_contig1095.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1737bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:230068..231804- (Ascophyllum nodosum dioecious)
CGTGGAAATACCTATGTGGAGCCCTACAGAACTCTTTGGGTAACCTGCAA
ACAGCTGGCAGTTATGATAATAGTTCTTCTTACTCTTCTAAAAGCATGGA
CACCAGGGGCAACGTGCGCTACTCTTCAAGCGAGGCAAGCCGGGGTGGTG
GCAGCCACGGGCTTGGCCACGGCTGTCATAGCTCCTTCAAGCCCCGCCTT
CTCGGCCGCGACGAGCAGAGCTTCGTTCTGGAGTTCCTGCGGTCGTGTGG
ACCGGACAGAGCCGGCCATCGACGCGGTACACGCAGTGGTGGTAGCGATA
TGATTCGAGAATGCGCCTATGACAACGCAGACGATACTATTTCTTTGGAA
ATGTTCGTGGAGTTTTGTCGATGGTGGGAACCTGTCACGAACACCTTATC
GCTAATGTTGGATGAATGGGCCTCGGTGGATCCGGTGAAAGTGCAAGGGT
TTATGGGCGGAAAGGAAGCAGAACGCCTACTTTTGAAGAAACGTCTCCCT
GGGGTTTTCCTACTGCGGTTCAGCAAGTCGAGCCCGGAGCGTTTGGTGCT
GACCTACACATGCAAGGTGCGCGAATGTTTTTATTTTGGTTGTTTTGAGG
TCGACGAGCGAAAACGAAATTTAATTGCTCTCTCTCTAAACTCTTTGCTG
TGTTAGACGCAGAAACTTGAGATACACCAGATACTTTGTCGTTACAATTA
TCACAAGTTGTGAATCGGTGGCTCAAAACGGATATTCTCTGTGAACCCCG
CCGCTCTCCTTTGCCCCGTTAACATGCCTCAGGCGTCTCAGGATATGAGC
AGCGGACAAGCCCGCAAGAACGGCTCTAAGGGTTGCCCTGTCGTCATCAC
GCGCTCATACGTCACCGTGCGCCCTGATGGCTGGTGGACATTGCACTACG
GCAAAGGAATGGAGGGCATCTCCTACCCTTCCCTGCGCGATTTGGTGAAC
AGTAAAGTCCACCTCCTGACGCTTTACCCAAGTTCCGCAAAGGGGGATGC
TTTCGAAACCTCTTAGCTGTAGTTTGTCAGCAATATGGTTCCCAGGCATG
ACTTTCCCGGCTCTGAGGGTCATCAACAGTTGGGATAAAATAGCACCCTA
GCCGACCGGAACCATCGGAATTTGCAACATGGAGCCTTTCTGAGGATTCT
ATCTTCCGGTCACGCGGTTGATTGGACACATTTTTGTTTAAATTTTATTC
AGCGATGGGAATACCGTAAGTATCGGAGCCTTAGCACACCCCCTAGACTG
ACTTTTCAGGCTCGATTACTCCACAACCAAGAGGATGTGAACACCGACCG
ATACGTTTGAAGAAAGCTATCGACGAGATCTTTCGAAAACCGCCCACTTT
TCGGCATTGACACCCTCTTGGTTGAGAGCAATCGAGCGTGGAAGATTAGT
CTTGGGGGTGTGCCAAGACTCCGATACTTACGTTATGTGTGAAGTGGCGG
TTTGTCCTGGTGATGTCATATACGTATATATAAAATGAATGGTAAGTAGT
TTCGGCCTTCTAAAATATGTTTCCGATCCATTTTCGCGGCGCTGTCGTTT
CAGAGTGATGGTCTCGGGGAAGTCGCCCAAGTGTCCTTTAAGTATCCATA
GGTAGGGAATGTGTCTCCGTCTCTTGATTCCGGGGTCCATGCCCGTTGCG
CACGTGCGGTGGACTACGTTCGTCGTGCGGTGTGGGGCATGCTGTACGCA
GATGACGCCTGCATAGTTTCGCGATCACCGCAGGGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1095:230068..231804-

>mRNA_A-nodosum_M_contig1095.16.1 ID=mRNA_A-nodosum_M_contig1095.16.1|Name=mRNA_A-nodosum_M_contig1095.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=705bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:230068..231804- (Ascophyllum nodosum dioecious)
ATGGACACCAGGGGCAACGTGCGCTACTCTTCAAGCGAGGCAAGCCGGGG
TGGTGGCAGCCACGGGCTTGGCCACGGCTGTCATAGCTCCTTCAAGCCCC
GCCTTCTCGGCCGCGACGAGCAGAGCTTCGTTCTGGAGTTCCTGCGGTCG
TGTGGACCGGACAGAGCCGGCCATCGACGCGGTACACGCAGTGGTGGTAG
CGATATGATTCGAGAATGCGCCTATGACAACGCAGACGATACTATTTCTT
TGGAAATGTTCGTGGAGTTTTGTCGATGGTGGGAACCTGTCACGAACACC
TTATCGCTAATGTTGGATGAATGGGCCTCGGTGGATCCGGTGAAAGTGCA
AGGGTTTATGGGCGGAAAGGAAGCAGAACGCCTACTTTTGAAGAAACGTC
TCCCTGGGGTTTTCCTACTGCGGTTCAGCAAGTCGAGCCCGGAGCGTTTG
GTGCTGACCTACACATGCAAGGCGTCTCAGGATATGAGCAGCGGACAAGC
CCGCAAGAACGGCTCTAAGGGTTGCCCTGTCGTCATCACGCGCTCATACG
TCACCGTGCGCCCTGATGGCTGGTGGACATTGCACTACGGCAAAGGAATG
GAGGGCATCTCCTACCCTTCCCTGCGCGATTTGGTGAACAGTAAAGTCCA
CCTCCTGACGCTTTACCCAAGTTCCGCAAAGGGGGATGCTTTCGAAACCT
CTTAG
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