prot_A-nodosum_M_contig1095.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1095.16.1
Unique Nameprot_A-nodosum_M_contig1095.16.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length235
Homology
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BLAST of mRNA_A-nodosum_M_contig1095.16.1 vs. uniprot
Match: A0A6A3NIE2_9STRA (SH2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NIE2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.320e-5
Identity = 46/158 (29.11%), Postives = 74/158 (46.84%), Query Frame = 0 
Query:   82 ISLEMFVEFCRWWEPVTNTLSLMLDEWASVDPVKVQGFMGGKEAERLLLKKRLPGVFLLRFSKSSPERLVLTYTCKASQDMSSGQARKNGSKGCPVVITRSYVTVRPD--GWWTLHYGK----GMEG--ISYPSLRDLVNSKVHLLTLYPSSAKGDAF 231
            +SL MF  F RW+ P+ + + L    W   +P  + GF+  K A   +L++   G FLLRFS++    +V+ Y                    C   +    VT +PD  GW+    G+    G EG  +++P+L++L+ S   L  L+P + K  AF
Sbjct:  836 VSLRMFAAFWRWFRPLVDCI-LYSTLWRHTEPRLLHGFLS-KGACLSMLERAPTGTFLLRFSETRLRCIVIVYV---------------RDDQCVQFVP---VTWQPDRGGWFVALQGEANTDGAEGNGVTFPTLQELILSVNVLKFLFPQTPKEAAF 973
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1095.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A3NIE2_9STRA5.320e-529.11SH2 domain-containing protein n=4 Tax=Phytophthora... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000980SH2 domainPFAMPF00017SH2coord: 118..158
e-value: 1.1E-6
score: 28.6
IPR000980SH2 domainPROSITEPS50001SH2coord: 115..213
score: 8.68407
IPR036860SH2 domain superfamilyGENE3D3.30.505.10SH2 domaincoord: 116..232
e-value: 5.9E-11
score: 44.3
IPR036860SH2 domain superfamilySUPERFAMILY55550SH2 domaincoord: 117..232
NoneNo IPR availableCDDcd00173SH2coord: 117..213
e-value: 8.50183E-9
score: 49.3763

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1095contigA-nodosum_M_contig1095:230789..231709 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1095.16.1mRNA_A-nodosum_M_contig1095.16.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1095 230068..231804 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1095.16.1 ID=prot_A-nodosum_M_contig1095.16.1|Name=mRNA_A-nodosum_M_contig1095.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=235bp
MDTRGNVRYSSSEASRGGGSHGLGHGCHSSFKPRLLGRDEQSFVLEFLRS
CGPDRAGHRRGTRSGGSDMIRECAYDNADDTISLEMFVEFCRWWEPVTNT
LSLMLDEWASVDPVKVQGFMGGKEAERLLLKKRLPGVFLLRFSKSSPERL
VLTYTCKASQDMSSGQARKNGSKGCPVVITRSYVTVRPDGWWTLHYGKGM
EGISYPSLRDLVNSKVHLLTLYPSSAKGDAFETS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
IPR036860SH2_dom_sf