mRNA_A-nodosum_M_contig1093.14.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI) HSP 1 Score: 435 bits (1118), Expect = 9.500e-126 Identity = 340/675 (50.37%), Postives = 389/675 (57.63%), Query Frame = 2
Query: 2 ARLRRQFISEVRRKGLGVPGAREAVAA-----RCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVE-GEGK---------GDVEKVP--------------------------------------------VCGLLDALLAEVATRSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPARDVTERMLAFQRECEARAAAQ----------VKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRLERGGARGREAALEAAKHEARQALEVREEGIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------EKSRGRHAEAIRRAVVERDALKAEVERLRERERLWEEEATELRRALSSAEMERDGAERRADEEECERTALDSQVEELRVALRRSRDAIEAIRLCDVEAEA 1714
ARLRRQF+ E+RRKGLGVPGA+EA A R RS GISL+ERVL+SLVVDHL SNG LQSLA+FLPESGLG S A+ G G A AALSREDVL+ LP+P +S LF+RVIRR E GEGK G+ VP VCGLL+AL+ EVATRS AVAVD+NTQTDEAGRSHKENL TRLE VRE WL+R+ADERREPA+DVTERMLA+QRECE+RAAAQ +KAE ++FRER+L+ALR+QM +T+R ++YDARVERLQE E R XXXXXXXXXXX X +DL+R REQEVRR AELD+R +RAEE RLRDLAVSLEARAEEVRR ER GARGRE AL+AA+HEARQ+LEV+EEG+AR XXXXXXXXXXX E+ R R A+++R+A ERDALKAE RLRERER WE +ALSSAE++RD AE RA+EEECER+ALD QVEELR ALRRSRDAIEAIRLCDVEAEA
Sbjct: 72 ARLRRQFVLELRRKGLGVPGAQEAAVAAGTCRRRRSPSGISLQERVLHSLVVDHLASNGLLQSLAVFLPESGLGGGSNCGNTATVGT-GPGAAPAAEAALSREDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSVCRSDGETAAVPGAAAGADTAVVSNASVAVXXXXXXXXXXXXXXXXXXXXSREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQSQYDARVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXXMDLLRTREQEVRRSAELDSRGVRAEELRLRDLAVSLEARAEEVRRREREGARGREDALQAARHEARQSLEVKEEGVARERCGVVGRGWEKRGEGGGGGGTGFPGGIAVLDHQRSEEFLKKEMEAVRAERKACQEQLSQHAETSRALQXXXXXXXXXXXRATAAEAEAERAAEQAAVYKEAYQMRREVTVEGDRAFVRLGRQELEGRVRSLEASMEEERARQAKSLRKATEERDALKAEATRLRERERQWEAXXXXXXQALSSAELDRDRAEHRAEEEECERSALDGQVEELRAALRRSRDAIEAIRLCDVEAEA 745
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: A0A6H5KLA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA2_9PHAE) HSP 1 Score: 120 bits (301), Expect = 9.180e-24 Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query: 1415 EKSRGRHAEAIRRAVVERDALKAEVERLRERERLWEEEATELRRALSSAEMERDGAERRADEEECERTALDSQVEELRVALRRSRDAIEAIRLCDVEAEA 1714
E+ + R A+++R+ ERDALKAE RLRERER WE R+ALSSAE++RD AE RA+EEECER+ALD QV+ELR ALRRSRDAIEAIRLCDVEAEA
Sbjct: 2 EEEKARQAKSLRKVTEERDALKAEATRLRERERQWEXXXXXXRQALSSAELDRDRAEHRAEEEECERSALDGQVQELRAALRRSRDAIEAIRLCDVEAEA 101
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: UPI0014258D63 (oral-facial-digital syndrome 1 protein homolog isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258D63) HSP 1 Score: 89.7 bits (221), Expect = 3.070e-14 Identity = 87/301 (28.90%), Postives = 135/301 (44.85%), Query Frame = 2
Query: 107 SLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVATRSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPARDVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHR---------LRDLAVS 982
SL R NSLV DHL + SLA+FLPESG+ + T D+L+ L + P+S L++++ + GLL LL+E+A S + Q D S +L +L+ V A+ R+ + + + +TE+ML+FQRE EAR+ Q+ E+ F+E E +L+++ R Y R L+E E RQNLL EL ++R++E EVRR +E++ RA + EE + LR++AV+
Sbjct: 70 SLLHRASNSLVADHLQRCQYEYSLAVFLPESGVASDKLFTT---------------------RDLLQLLKINPDSKLYRKIA--------SSLPSFNAKGLLWQLLSEIANSHSGGSESKGVQADLYSHS---SLVDKLDDVDRAFNSRSNGQDLQGSNVITEKMLSFQREVEARSKEQLNFEIRRFKESEYRSLQMEEREKFRLKLESSRKDLENTYQMRCRALEERERNATERLQQQQQIAQKEMHAQRQNLLDELQILRSKEAEVRRESEVNKRAAKLEEDKRLAIEENLKLREIAVN 338
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: A0A8K0EW63_BRALA (OFD1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EW63_BRALA) HSP 1 Score: 83.2 bits (204), Expect = 3.010e-12 Identity = 91/341 (26.69%), Postives = 151/341 (44.28%), Query Frame = 2
Query: 2 ARLRRQFISEVRRKGLGVPGAREAVAARCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRR--VEGEGKGDVEKVPVCGLLDALLAEVATRSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPARDVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRLE 1018
++LR + I+E+R G E V G SL R NSLV +HL + SL++FLPE G+ + T+ D+L+ L V P+S + + + + V G KG + ++ +C L AL + D QTD + +L +L V E + + A + +RML++QR+ + RA +QVK E+ F+E EL +RL+ R Y ++ + L E RQ +L EL++VR+RE + RR AE++ RA++ E+ +++ L ++ R E V+ +E
Sbjct: 33 SQLRNKLITELRSSGRS-----ERVPRPVDIPEGGSLLHRAANSLVANHLQKCSYDYSLSVFLPECGISRDQLLTTS---------------------DLLQLLRVNPQSKVHKSLTGKLHVPGSSKGFLWQL-LCELTSAL-------PQGLTEDIGCQTDASTLPPAASLNDKLRSVDERFSVQRDQLAASSALTIEDRMLSYQRKVDERARSQVKQEVAHFKETELVRMRLEEKEKTRREIDAMRRELEQEYRSKSDALLARERNAIERLQKQQEIQDKEMHAQRQAILEELEMVRSREAQARREAEVNDRAVQIEQDKMKSLEENIHRREEAVKSIE 339
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: A0A4W4FSA0_ELEEL (OFD1 centriole and centriolar satellite protein n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4FSA0_ELEEL) HSP 1 Score: 72.0 bits (175), Expect = 7.280e-9 Identity = 86/339 (25.37%), Postives = 149/339 (43.95%), Query Frame = 2
Query: 8 LRRQFISEVRRKGLGVPGAREAVAARCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVATRSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPAR--DVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRLE 1018
LR Q I E++ P A AA A +S+ NSLV+DHL S+G+ +L++F PE G+ K S D+L+ + + P S L++ ++ + +P GLL +LL+E+ D +TQT A +S E+L +L+ + E + D R++ R V ++ A+++E E ++ ++K +++ F+E E+ +R + R Y+ + E L E ++ RQ LL+EL+ VR RE E+R E ++ + E ++R L L R V+ +E
Sbjct: 35 LRNQMIQELQ-----PPLAHGTPAAATAQAHPVSVLAS--NSLVIDHLQSSGYEYTLSVFYPECGMS---------------------KDKVFSTRDLLQFMKLGPHSPLYKSLVNHL---------LIPGAGLLISLLSELIDHHIHERRDVDTQTSTA-QSSAESLVRKLQLIDEEY----EDLRQQGHRWSSVEAKLAAYRKEMEEQSQTELKVKVQHFQEVEMVRVRREEQDRCRQELLEITRTLERTYEQKAEALMNREKNAIERLQKQQEIEEKEIYNQRQALLKELEAVRNRENELRHQVEAFEKSCKDHEEKMRSLEEILRRRESTVKTME 331
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: UPI0015CFC134 (oral-facial-digital syndrome 1 protein homolog isoform X1 n=3 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015CFC134) HSP 1 Score: 70.9 bits (172), Expect = 1.750e-8 Identity = 86/339 (25.37%), Postives = 148/339 (43.66%), Query Frame = 2
Query: 8 LRRQFISEVRRKGLGVPGAREAVAARCRSAGGISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVATRSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPAR--DVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRLE 1018
LR Q I E++ P A AA A +S+ NSLV+DHL S+G+ +L++F PE G+ K S D+L+ + + P S L++ ++ + KG LL +LL+E+ D +TQT A +S E+L +L+ + E + D R++ R V ++ A+++E E ++ ++K +++ F+E E+ +R + R Y+ + E L E ++ RQ LL+EL+ VR RE E+R E ++ + E ++R L L R V+ +E
Sbjct: 42 LRNQMIQELQ-----PPLAHGTPAAATAQAHPVSVLAS--NSLVIDHLQSSGYEYTLSVFYPECGMS---------------------KDKVFSTRDLLQFMKLGPHSPLYKSLVSNTQNGQKG---------LLISLLSELIDHHIHERRDVDTQTSTA-QSSAESLVRKLQLIDEEY----EDLRQQGHRWSSVEAKLAAYRKEMEEQSQTELKVKVQHFQEVEMVRVRREEQDRCRQELLEITRTLERTYEQKAEALMNREKNAIERLQKQQEIEEKEIYNQRQALLKELEAVRNRENELRHQVEAFEKSCKDHEEKMRSLEXILRRRESTVKTME 338
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: UPI001128EBDA (oral-facial-digital syndrome 1 protein isoform X3 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001128EBDA) HSP 1 Score: 65.5 bits (158), Expect = 7.580e-7 Identity = 74/307 (24.10%), Postives = 133/307 (43.32%), Query Frame = 2
Query: 107 SLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVAT---RSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPARDVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRLE 1018
SL R NSLV DHL G+ SL++F PESGL T +D+L+ + + P+S L++ + ++ E K G L +L E+ R VDT T + +KE+L +L+ + + + +R + ++ +++E E R A++ ++L+ F++ E++ ++L+ R RY + E L E + RQ LL+++++VR+RE E+++ E A + +E + R L +L R VR +E
Sbjct: 62 SLFARASNSLVADHLHRCGYEYSLSVFYPESGLQQEKLFTT---------------------QDLLQLMKINPKSKLYKALTSDIQQENKR--------GFLMQILMELTDHHIRKEGHDVDTQTISIP---PYKESLVDKLQQIDRQFAEIYPQHQR--LESLEAKLTEYRKEMEERLGAEMSSKLQYFKDVEIAKIKLEEKENSRKELVALQRELEKRYQTKSEGLMSRERNAIERLQMHQEIEAKETYAQRQGLLKDIEMVRSRETELKKRIEAFEVAEKLQEEKNRSLEDALRCRELAVRNIE 334
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: UPI001129646C (oral-facial-digital syndrome 1 protein isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001129646C) HSP 1 Score: 65.5 bits (158), Expect = 7.740e-7 Identity = 74/307 (24.10%), Postives = 133/307 (43.32%), Query Frame = 2
Query: 107 SLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVAT---RSSAVAVDTNTQTDEAGRSHKENLATRLEGVREAWLKRAADERREPARDVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRLE 1018
SL R NSLV DHL G+ SL++F PESGL T +D+L+ + + P+S L++ + ++ E K G L +L E+ R VDT T + +KE+L +L+ + + + +R + ++ +++E E R A++ ++L+ F++ E++ ++L+ R RY + E L E + RQ LL+++++VR+RE E+++ E A + +E + R L +L R VR +E
Sbjct: 62 SLFARASNSLVADHLHRCGYEYSLSVFYPESGLQQEKLFTT---------------------QDLLQLMKINPKSKLYKALTSDIQQENKR--------GFLMQILMELTDHHIRKEGHDVDTQTISIP---PYKESLVDKLQQIDRQFAEIYPQHQR--LESLEAKLTEYRKEMEERLGAEMSSKLQYFKDVEIAKIKLEEKENSRKELVALQRELEKRYQTKSEGLMSRERNAIERLQMHQEIEAKETYAQRQGLLKDIEMVRSRETELKKRIEAFEVAEKLQEEKNRSLEDALRCRELAVRNIE 334
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: A0A1Y1HLP5_KLENI (Dystonin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLP5_KLENI) HSP 1 Score: 64.7 bits (156), Expect = 1.470e-6 Identity = 73/304 (24.01%), Postives = 140/304 (46.05%), Query Frame = 2
Query: 107 SLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVATRSSAVAVDTNTQT-DEAGRSHKENLATRLEGVREAWLKRAADERREPARDVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRXXXXXXXXXXXARYDARVERLQEVEAGRXXXXXXXXXXXXMXQFDARQNLLRELDLVRAREQEVRRGAELDARAIRAEEHRLRDLAVSLEARAEEVRRL 1015
+L +R+LNSL +D+LTS G++ +L++F PE G+ +S +P +R ++L +L + V GK + + L L ++ R + ++ +QT D G E+ L + + +L + ER P + ERM ++RE + RA A++ A ++ R+ E+ A R++ R + R+E+L+ E + + RQ +L E +++R RE ++++ E+ R ++ E RL + A++++ R E+V+RL
Sbjct: 60 ALPQRILNSLFIDYLTSQGYVYTLSVFTPECGM--ASQMP-------------------FTRGELLH--------LLHLNDLASVLSRGKFQESQKSLAWELLERLDQL--RGPSTTQESGSQTWDGQGGDFPES---HLRSIEDQYLHKMDTERLLPYHSLEERMDQYRREVDQRARAEIAAAVDRVRQFEVGAARMEEATRYRRQLEDAREDLERVHAERLEQLRRREESQRERLQRQERAAETAAHEQRQRILAETEVLREREGKLKQLEEMQLRTLKLHEERLLEKALAVKEREEDVQRL 329
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Match: R1EQP9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EQP9_EMIHU) HSP 1 Score: 63.5 bits (153), Expect = 2.570e-6 Identity = 75/208 (36.06%), Postives = 98/208 (47.12%), Query Frame = 2
Query: 104 ISLRERVLNSLVVDHLTSNGFLQSLAIFLPESGLGNSSAVPTAASDGADGEAAGRLKTAALSREDVLRGLPVPPESVLFQRVIRRVEGEGKGDVEKVPVCGLLDALLAEVATRSSAVAVDTNTQTDEAGRSHKENLATRLEGVR---EAWLKRAADERREPARDVTERMLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQR 718
+ L +R +SLV+ HL ++G SL++F ESGLG VP D D RL +AL+ + G G+GD E V G + LL R S T T G S E L +RL V EA L RAA E EPA ++ R+L +QRE +ARAAAQV AE+ R+ EL+ +RL A R
Sbjct: 53 LPLVQRAASSLVLRHLRASGCAYSLSVFSSESGLGG---VPLEPHDICD---ILRLPRSALAPAPTVAG--------------------GEGDSELVRALGAVGRLLPS--GRES-------TATQTGGGSSPEELESRLRAVDRGLEASLLRAA-EGAEPAAELEGRLLRYQREADARAAAQVAAEVARVRQVELAQVRLSEAAKAR 224 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1093.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1093.14.1 >prot_A-nodosum_M_contig1093.14.1 ID=prot_A-nodosum_M_contig1093.14.1|Name=mRNA_A-nodosum_M_contig1093.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1124bp MLAFQRECEARAAAQVKAELETFRERELSALRLQMNATQRRELDAARKELback to top mRNA from alignment at A-nodosum_M_contig1093:248352..259844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1093.14.1 ID=mRNA_A-nodosum_M_contig1093.14.1|Name=mRNA_A-nodosum_M_contig1093.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11493bp|location=Sequence derived from alignment at A-nodosum_M_contig1093:248352..259844- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1093:248352..259844- >mRNA_A-nodosum_M_contig1093.14.1 ID=mRNA_A-nodosum_M_contig1093.14.1|Name=mRNA_A-nodosum_M_contig1093.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=3372bp|location=Sequence derived from alignment at A-nodosum_M_contig1093:248352..259844- (Ascophyllum nodosum dioecious)back to top |