mRNA_A-nodosum_M_contig108.42.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 1.240e-17 Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 4 GTVLNIRG--NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ 234
GTVL I G S+A +DG S RLFTVV+A LH+S +N+SHG S+ GGAIAA GS LTFN+T F GN A+ NGGA+F
Sbjct: 266 GTVLTITGAAGSNAALDGNSVTRLFTVVNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVASGNGGAVFVS 344
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 4.330e-15 Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHS-VFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ-GCTLSFNGDTSF 270
GT++ + G S+AVIDG + RLFTVVDA LHL VN+S+G S GG IAAAGS +T N T GN A +GGA++A G T+S GDT+F
Sbjct: 88 GTIVTVTGVGSTAVIDGHAATRLFTVVDASLHLRNVNISYGASRAVGGGIAAAGSRVTLNHTSIVGNRATGHGGAVYASNGSTVSCLGDTAF 179
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 6.090e-15 Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 4 GTVLNIRGN-SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF 228
GTVL I G+ +S+VIDG + RLFTV +AVLHLS +N+S+G S+ GGAIAAA S LTFN T F GN A R GG ++
Sbjct: 328 GTVLTITGDGASSVIDGNTLTRLFTVNNAVLHLSNLNISNGASIVGGAIAAANSSLTFNGTNFVGNQATRYGGGVY 403
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 8.150e-15 Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 4 GTVLNIRGN-SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF-AQGCTLSFNGDTSF 270
GT L+I G+ SSA IDG + RLFTVV+A LHL+ V+V+ G S GGAIAAAG+ LT N+T F NTA NGGA++ + G ++ +G SF
Sbjct: 193 GTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMVCSGGGSF 283
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.040e-14 Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 19 IRGNSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAG-SLLTFNRTIFSGNTAARNGGALFAQ 234
+RG S+A +DG S RLFTVVDA LH+ VN+SHG S+ GGAIAA G S LTFN+T F GN A+ NGGA++
Sbjct: 22 VRG-SNAALDGNSATRLFTVVDASLHVRGVNISHGASISGGAIAAGGGSTLTFNKTNFIGNVASGNGGAVYVS 93
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.050e-14 Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ 234
GTVL I G +SSAV++G ++ R+FTVV+A L+LS VNVS+G S GGAIAAA S LT N T F GNTA+ GGA++
Sbjct: 182 GTVLTISGADSSAVVEGNASTRIFTVVNADLYLSHVNVSYGSSTTGGAIAAARSSLTLNGTNFVGNTASAYGGAIYVS 259
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 5.050e-14 Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 4 GTVLNIRGN--SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQGCTLSFNGDTSF 270
GT LN+ G +SAVIDG T RLF+V +A L LS V + G S GGAIAA+G+ L FN T F N+A NGGAL+ ++S+ G T F
Sbjct: 173 GTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSAGSNGGALWLTDSSVSWGGGTEF 263
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.790e-13 Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF 228
GTVL + G +SSAV++G ++ R+FTVV+A L+LS VNVS+G S GGAIAAA S LT N T F GN A+ GGA++
Sbjct: 241 GTVLTVSGADSSAVVEGNASTRIFTVVNANLYLSGVNVSYGSSTVGGAIAAARSSLTLNGTSFVGNAASSYGGAIY 316
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5L3Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y9_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 8.020e-11 Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ 234
GTVL + G +S+AVI+G + RLFTVV+A LH+S VN+S G SV G AIAAAGS TF+R F + A GG +F
Sbjct: 12 GTVLTVAGADSNAVINGNAGTRLFTVVNAALHVSGVNISLGASVAGEAIAAAGSTQTFDRANFVRHGATALGGVVFVS 89
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 4.480e-9 Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 4 GTVLNIRGN--SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF 228
GT LN+ G +SAVIDG RLF+V +A L LS V + G S GGAIAA+G+ L F T F ++A NGGAL+
Sbjct: 183 GTDLNVTGGGEASAVIDGNGNTRLFSVDNATLRLSGVELCSGFSTGGGAIAASGATLAFRNTSFVNDSAGTNGGALW 259 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig108.42.1 >prot_A-nodosum_M_contig108.42.1 ID=prot_A-nodosum_M_contig108.42.1|Name=mRNA_A-nodosum_M_contig108.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=155bp NGTVLNIRGNSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAback to top mRNA from alignment at A-nodosum_M_contig108:579809..580273+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig108.42.1 ID=mRNA_A-nodosum_M_contig108.42.1|Name=mRNA_A-nodosum_M_contig108.42.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig108:579809..580273+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig108:579809..580273+ >mRNA_A-nodosum_M_contig108.42.1 ID=mRNA_A-nodosum_M_contig108.42.1|Name=mRNA_A-nodosum_M_contig108.42.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig108:579809..580273+ (Ascophyllum nodosum dioecious)back to top |