mRNA_A-nodosum_M_contig108.42.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig108.42.1
Unique NamemRNA_A-nodosum_M_contig108.42.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.240e-17
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    4 GTVLNIRG--NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ 234
            GTVL I G   S+A +DG S  RLFTVV+A LH+S +N+SHG S+ GGAIAA GS LTFN+T F GN A+ NGGA+F  
Sbjct:  266 GTVLTITGAAGSNAALDGNSVTRLFTVVNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVASGNGGAVFVS 344          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.330e-15
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHS-VFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ-GCTLSFNGDTSF 270
            GT++ + G  S+AVIDG +  RLFTVVDA LHL  VN+S+G S   GG IAAAGS +T N T   GN A  +GGA++A  G T+S  GDT+F
Sbjct:   88 GTIVTVTGVGSTAVIDGHAATRLFTVVDASLHLRNVNISYGASRAVGGGIAAAGSRVTLNHTSIVGNRATGHGGAVYASNGSTVSCLGDTAF 179          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.090e-15
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 GTVLNIRGN-SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF 228
            GTVL I G+ +S+VIDG +  RLFTV +AVLHLS +N+S+G S+ GGAIAAA S LTFN T F GN A R GG ++
Sbjct:  328 GTVLTITGDGASSVIDGNTLTRLFTVNNAVLHLSNLNISNGASIVGGAIAAANSSLTFNGTNFVGNQATRYGGGVY 403          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 8.150e-15
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    4 GTVLNIRGN-SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF-AQGCTLSFNGDTSF 270
            GT L+I G+ SSA IDG +  RLFTVV+A LHL+ V+V+ G S  GGAIAAAG+ LT N+T F  NTA  NGGA++ + G ++  +G  SF
Sbjct:  193 GTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMVCSGGGSF 283          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.040e-14
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   19 IRGNSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAG-SLLTFNRTIFSGNTAARNGGALFAQ 234
            +RG S+A +DG S  RLFTVVDA LH+  VN+SHG S+ GGAIAA G S LTFN+T F GN A+ NGGA++  
Sbjct:   22 VRG-SNAALDGNSATRLFTVVDASLHVRGVNISHGASISGGAIAAGGGSTLTFNKTNFIGNVASGNGGAVYVS 93          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.050e-14
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ 234
            GTVL I G +SSAV++G ++ R+FTVV+A L+LS VNVS+G S  GGAIAAA S LT N T F GNTA+  GGA++  
Sbjct:  182 GTVLTISGADSSAVVEGNASTRIFTVVNADLYLSHVNVSYGSSTTGGAIAAARSSLTLNGTNFVGNTASAYGGAIYVS 259          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.050e-14
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    4 GTVLNIRGN--SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQGCTLSFNGDTSF 270
            GT LN+ G   +SAVIDG  T RLF+V +A L LS V +  G S  GGAIAA+G+ L FN T F  N+A  NGGAL+    ++S+ G T F
Sbjct:  173 GTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSAGSNGGALWLTDSSVSWGGGTEF 263          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.790e-13
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF 228
            GTVL + G +SSAV++G ++ R+FTVV+A L+LS VNVS+G S  GGAIAAA S LT N T F GN A+  GGA++
Sbjct:  241 GTVLTVSGADSSAVVEGNASTRIFTVVNANLYLSGVNVSYGSSTVGGAIAAARSSLTLNGTSFVGNAASSYGGAIY 316          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5L3Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 8.020e-11
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 GTVLNIRG-NSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALFAQ 234
            GTVL + G +S+AVI+G +  RLFTVV+A LH+S VN+S G SV G AIAAAGS  TF+R  F  + A   GG +F  
Sbjct:   12 GTVLTVAGADSNAVINGNAGTRLFTVVNAALHVSGVNISLGASVAGEAIAAAGSTQTFDRANFVRHGATALGGVVFVS 89          
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.480e-9
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    4 GTVLNIRGN--SSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIAAAGSLLTFNRTIFSGNTAARNGGALF 228
            GT LN+ G   +SAVIDG    RLF+V +A L LS V +  G S  GGAIAA+G+ L F  T F  ++A  NGGAL+
Sbjct:  183 GTDLNVTGGGEASAVIDGNGNTRLFSVDNATLRLSGVELCSGFSTGGGAIAASGATLAFRNTSFVNDSAGTNGGALW 259          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LSC0_ECTSI1.240e-1760.76Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FTL7_ECTSI4.330e-1554.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5Y7_ECTSI6.090e-1560.53Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K0E9_9PHAE8.150e-1553.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LIY0_ECTSI2.040e-1460.27Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2X5_ECTSI2.050e-1458.97Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FHH1_ECTSI5.050e-1450.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z1_9PHAE1.790e-1357.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y9_9PHAE8.020e-1153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR67_9PHAE4.480e-950.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:579809..580273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSC0
PFAMsBeta_helix,Chlam_PMP
Model size466
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.04e-18
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866466.270682-CDS-A-nodosum_M_contig108:579808..5802731680866466.270682-CDS-A-nodosum_M_contig108:579808..580273Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig108 579809..580273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.42.1prot_A-nodosum_M_contig108.42.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig108 579809..580273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig108.42.1

>prot_A-nodosum_M_contig108.42.1 ID=prot_A-nodosum_M_contig108.42.1|Name=mRNA_A-nodosum_M_contig108.42.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=155bp
NGTVLNIRGNSSAVIDGGSTNRLFTVVDAVLHLSEVNVSHGHSVFGGAIA
AAGSLLTFNRTIFSGNTAARNGGALFAQGCTLSFNGDTSFFHNSGVNGGA
AYMVEGTSALWAGETSFTHNIAGAAGGALYLTDGGSTSWEAKTTFSGNAA
GGNGG
back to top

mRNA from alignment at A-nodosum_M_contig108:579809..580273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig108.42.1 ID=mRNA_A-nodosum_M_contig108.42.1|Name=mRNA_A-nodosum_M_contig108.42.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig108:579809..580273+ (Ascophyllum nodosum dioecious)
AACGGGACAGTGCTCAACATCAGGGGCAATTCAAGTGCCGTCATTGATGG AGGAAGCACCAATCGTCTTTTCACGGTCGTCGATGCAGTCCTCCACCTGA GCGAGGTCAACGTCAGTCATGGGCACTCTGTTTTTGGCGGAGCCATTGCG GCGGCGGGGTCTCTTTTGACCTTCAATCGGACAATATTCTCTGGCAACAC CGCTGCAAGAAATGGCGGTGCCTTGTTCGCGCAAGGTTGTACCCTTTCCT TTAATGGAGATACCAGCTTCTTTCACAACAGCGGTGTGAACGGCGGCGCC GCGTACATGGTCGAAGGCACCAGTGCCTTGTGGGCGGGAGAAACCTCGTT TACGCACAATATTGCTGGCGCCGCGGGTGGAGCGCTGTACCTGACGGATG GCGGTAGCACATCCTGGGAAGCAAAAACAACCTTTTCGGGCAACGCTGCT GGTGGCAACGGAGGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig108:579809..580273+

>mRNA_A-nodosum_M_contig108.42.1 ID=mRNA_A-nodosum_M_contig108.42.1|Name=mRNA_A-nodosum_M_contig108.42.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=465bp|location=Sequence derived from alignment at A-nodosum_M_contig108:579809..580273+ (Ascophyllum nodosum dioecious)
AACGGGACAGTGCTCAACATCAGGGGCAATTCAAGTGCCGTCATTGATGG
AGGAAGCACCAATCGTCTTTTCACGGTCGTCGATGCAGTCCTCCACCTGA
GCGAGGTCAACGTCAGTCATGGGCACTCTGTTTTTGGCGGAGCCATTGCG
GCGGCGGGGTCTCTTTTGACCTTCAATCGGACAATATTCTCTGGCAACAC
CGCTGCAAGAAATGGCGGTGCCTTGTTCGCGCAAGGTTGTACCCTTTCCT
TTAATGGAGATACCAGCTTCTTTCACAACAGCGGTGTGAACGGCGGCGCC
GCGTACATGGTCGAAGGCACCAGTGCCTTGTGGGCGGGAGAAACCTCGTT
TACGCACAATATTGCTGGCGCCGCGGGTGGAGCGCTGTACCTGACGGATG
GCGGTAGCACATCCTGGGAAGCAAAAACAACCTTTTCGGGCAACGCTGCT
GGTGGCAACGGAGGC
back to top