mRNA_A-nodosum_M_contig108.13.2 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig108.13.2 vs. uniprot
Match: D7G7N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N8_ECTSI) HSP 1 Score: 325 bits (832), Expect = 2.880e-88 Identity = 406/1246 (32.58%), Postives = 567/1246 (45.51%), Query Frame = 3
Query: 3 RGLRLPSLLIALTEIVRDNGFGSGAQRAAASALVAFCGGSPSLWKELAREIRDDARVLKGFLGQASTLASITDFRTQELTFEAVYRMWKVWKKQDEGPPTLPPGTPNEVKEGLATISTNAFERQVRSVLISMNERGEGEDEGDGPN---------LDPPSSFPVEAVHQVTDWTGLGCERKIGDAQWLDVGSDTISMLVRPIVASRGRARDVP---GDVFVSISADVISTSTKATVGTRSLRVDVPFSQCSALHRLALEPPRDHSGNGSCILSIRIGGGARVFTRLRQALAVLAAKATK-----KPGDQLKSPPAKVSI---------NVLTSPSGKRQKISEEAETPLV--------------------SHPTPRK--RAKIDRGSGVIASQRGAGSHQAVFKR------NSPTKASMVTPTMSANDETLRSSSNDTAAATDQKK----TPSAGQ-QVPAKKIAVTGSNIQVPATVRAMVRGGGPADKARNDRRFGKVHKNIRSIAEGNADPDAVETTVDGRVGETESENDSWMESRCRLELAPSSMPSSGRRKMNSGGDKDQSRAKMPRGIGQGGIGAAIKSFKERTRTAIRKPET-WDADETWRMEDEDDCVG------YVEETPRKNLTQQSRSKPGTQQHPRQQRGGGIGERKGTPSTKDSTGASSVRAAAGLSSSRRGRTKSTTVCASRPGEA---AGDSR--WQAASEPKAKGANQLWGGTASKGNAKKTAAKTKGESDG-----------------------------DSSTAVPSR--RERLPRRDASAGVSTTAVPVTTELPSSSDEAVFSEEDEWASSKEGKSSGDDVIEQTAEEESGAENDGVGGDVKLRGHESALSESEGVGSEDEDGKAQDDVETSEERARAGAGVVPVTGGQGHSISKESSELKETSRQGQQRE------DQDEQAIGSQDESEEDVEEARGDSNGDCADDEELTEQSTPPGVATATVQRERKRGKACAQTATGGRFAGGDEGGEEMXXXXXXXXXXXXXXXXXXX-----ESEDNY-----------------------SVMIAKICKQMISHARARDLRVKKRKTDAAIEDARQECRDYLERTSQTVTGYWRQQAEDLVERGLQAEDAVAAARERVRALAVEHEEQWQASMDRVQKHATALKRLDNQIRSGRGTFES-KLKIAWQADVEALKLNLQKHREETVASFSSTLASLEKKAKSG-GEAVDSSSIPSLLSRLTM 3326
RGLR P+LL+AL IV+DN GSGAQRAA SALVAFC SP LWKELA+E+R +L+GFL AS LASI D RTQEL FEA+YR+WKVWKKQ GPP LPP T E+ EG ++I+ + FE Q R++L ++N R G+D DG L PPSSFPVEA+ QVT+W GLG ++G+A LD+G D+IS+ V P AS G+ G VF+SI A+ ++ ++K VG RSL+VDV S+C AL RL PP +++ +C + I++ GG+++F+R RQA+A L +K KP KS ++ + L G + + ++ E S TPRK R DRG + R S KR N+PT + + P +A T +SS + TD K TP+AG + A+ AVT + + A R +EG++ + D + DSWM R L+LAP+S ++ +RK K SR + G G + AA K +++R T WD E DE C +EE ++ + K TPS S G R W + K ++ G A +G SD DS +R R R RR+A++ P ++ + G G K H++ + + GS +ED +A+ E + RA G + G S+S++S G + ++DE S + E+++EA ++ DC+D EELTE+ST G A T R+ G A+T R XXXXXXXXXXXXXXXXXXX S+++Y S+++A+I KQ+++ ++AR R+KKRKTD+A+E R ECRDY+E SQ V+ +WR+QA+DL+E+G QAE+ V AARE VR L ++HE+Q QA+ DRV+K A+ LK L++ G G + KL+ AW + L+ LQKHRE VA FS TL+S +K K G G DS+SI SLLS LTM
Sbjct: 22 RGLRRPALLLALVGIVQDNKAGSGAQRAAGSALVAFCDSSPGLWKELAKEVRSSKTLLQGFLKPASMLASIADHRTQELVFEALYRLWKVWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPNGDDGEDGEYDPEEDEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQVYP-KASPGKTSGTSTGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENAATANCTIIIQLEGGSQMFSRFRQAIAALKSKVPDVAKEAKPSRGSKSTKGSSALEHAEVFKPSDELEGAEGVEEDLDDDDEEGTQTNHRKRPRAVCGLAGSVSNRSRITPRKDGRRDSDRGGEDQTASREKASSGRKAKRAHRAPLNTPTDSPVSAPAAAARVNTSTASSAEKKRITDHAKGEVPTPAAGSFRRIAQGAAVTAHDSSLQA----------------------------RESSEGSSR--SFSDDADATAARDDDGGDSWMAPRRHLDLAPAS--ATAKRKDKQARTKTGSRNRD----GSGKVRAA----KGDGGSSLRGGSTEWDISED-DGGDEGHCEKGSAGRHRLEEVTPRSKAXXXXXXXXXXXXXXXXXSSVLSGSKNTPSPPASVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGGRHRRLWGLDEDQKQHASSSKQGEELGISTLSVVVASAEGRSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLNVGAARGGRNRPSRREAASRALKALSPPXXXXXXXXXXXXXXXXXXXSNRQRPH--------------------GNAGGRKGSSHQTTVPAA-ATGSREED-RAEKSSEQRKLRAHVQVGEAAGSVG---SLSQQSFFSFGGDEDGGDNDNDAEYVEEDEGGAESDKDGSEELDEAASPTS-DCSD-EELTERSTSGGGAAPTRGRQ---GAVPAKTDRRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSDNDYNLEEDDIEEAVEGGEDEDGGEEDSLILAQIYKQLVAASQARTKRIKKRKTDSAVEATRAECRDYVESVSQAVSEHWRRQAQDLLEQGRQAEEDVVAAREVVRVLTLQHEDQRQAARDRVEKLASTLKSLESYFGPGPGASSTTKLENAWLGEGVELQQKLQKHRESAVARFSVTLSSNKKANKGGRGGGGDSTSIASLLSHLTM 1195
BLAST of mRNA_A-nodosum_M_contig108.13.2 vs. uniprot
Match: A0A6H5LAM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAM6_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.430e-54 Identity = 124/315 (39.37%), Postives = 170/315 (53.97%), Query Frame = 3
Query: 120 SPSLWKELAREIRDDARVLKGFLGQASTLASITDFRTQELTFEAVYRMWK----------------------------------------------------------VWKKQDEGPPTLPPGTPNEVKEGLATISTNAFERQVRSVLISMNERGEGED---------EGDGPNLDPPSSFPVEAVHQVTDWTGLGCERKIGDAQWLDVGSDTISMLVRPIVASRGRARDVP---GDVFVSISADVISTSTKATVGTRSLRVDVPFSQCSALHRLALEPPRDHSGNGSCILSIRIGGGARVFTRLRQALAVLAAK 854
SP LWKELA+E+R +L+GFL ASTLASI D RTQEL FEA+YR+WK VWKKQ GPP L P T E+ EG ++I+ + FE Q R++L ++N R D EG+ L PPSSFPVEA+ QVT+W GLG ++G+A LD+G D+IS+ V P AS G++ G VF+SI A+ ++ ++K VG RSL+VDV S+C AL RL PP +++ +C + I++ GG+++F R RQA+A L +K
Sbjct: 23 SPGLWKELAKEVRSSKTLLQGFLKSASTLASIADHRTQELVFEALYRLWKASLLRRGTCASDRAPRFPKVQRQQARKYRQGEKEDAKLSPICSTVECAPDNPERILPKVWKKQRGGPPQLLPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPNKNDDDDAEYDPQEGEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQVYP-KASPGKSSGTSTGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENAATANCTVIIQLEGGSQMFNRFRQAIAALKSK 336
BLAST of mRNA_A-nodosum_M_contig108.13.2 vs. uniprot
Match: A0A6H5L3H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H8_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 7.130e-16 Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 3
Query: 2838 ARDLRVKKRKTDAAIEDARQECRDYLERT--SQTVTGYWR-----------QQAEDLVERGLQAEDAVAAARERVRALAVEHEEQWQASMDRVQKHATALKRLDNQIRSGRGTFES-KLKIAWQADVEALKLNLQKHREETVA 3224
AR R+KKRKTD+A+E R+ECRDY+ER S ++ Q A+DL+E+G QAE+ V AARE VR L ++HEEQ QA+ DRV+K A+ LK L++ G G + KL+ AW + L+ LQ HRE VA
Sbjct: 573 ARTKRIKKRKTDSAVEATREECRDYVERDGGSNRFDDCYKARSTLPRLQETQSAQDLLEQGRQAEEDVVAAREAVRVLTLQHEEQRQAARDRVEKLASTLKGLESYFGPGPGASSTTKLENAWLGEGVELQQKLQNHRESAVA 715 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.13.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig108.13.2 >prot_A-nodosum_M_contig108.13.2 ID=prot_A-nodosum_M_contig108.13.2|Name=mRNA_A-nodosum_M_contig108.13.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1026bp MWKVWKKQDEGPPTLPPGTPNEVKEGLATISTNAFERQVRSVLISMNERGback to top mRNA from alignment at A-nodosum_M_contig108:113898..125319- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig108.13.2 ID=mRNA_A-nodosum_M_contig108.13.2|Name=mRNA_A-nodosum_M_contig108.13.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11422bp|location=Sequence derived from alignment at A-nodosum_M_contig108:113898..125319- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig108:113898..125319- >mRNA_A-nodosum_M_contig108.13.2 ID=mRNA_A-nodosum_M_contig108.13.2|Name=mRNA_A-nodosum_M_contig108.13.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=3078bp|location=Sequence derived from alignment at A-nodosum_M_contig108:113898..125319- (Ascophyllum nodosum dioecious)back to top |