mRNA_A-nodosum_M_contig1071.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1071.5.1
Unique NamemRNA_A-nodosum_M_contig1071.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1071.5.1 vs. uniprot
Match: D7G015_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G015_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.580e-44
Identity = 87/148 (58.78%), Postives = 106/148 (71.62%), Query Frame = 3 
Query:  309 YRNVTVREAVEWTMSNDSGFTYIDVRSAEEHENLATPRGALCIPAFERAHRVPSPAEDGADPSLPLDDED---------YNYENVEWKVLPDFVDRVKAQFKPDAKLLIGYKTKRSAEACRLLADAGFTELFNVESRTFMKTRLQQAW 725
            Y +VTVREAVEWTMS DS F+YID+RSAEEHE LAT RGALCIPAF+    +P   E G      LDD+D         YN+E  ++ V PDFVD +KA+F  DAKLLIG KT RSA+AC+LL +AGFTE++NVES+ FM+TR  + W
Sbjct:   71 YTDVTVREAVEWTMSRDSEFSYIDIRSAEEHEKLATVRGALCIPAFDLV--MPEAEEQGEG----LDDQDGDDTGYAPAYNFEESDYTVKPDFVDTMKARFDLDAKLLIGCKTYRSAKACQLLVEAGFTEIYNVESQIFMRTRAPEVW 212
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BLAST of mRNA_A-nodosum_M_contig1071.5.1 vs. uniprot
Match: A0A836CME5_9STRA (Rhodanese domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.650e-20
Identity = 53/135 (39.26%), Postives = 76/135 (56.30%), Query Frame = 3 
Query:  309 YRNVTVREAVEWTMSNDSGFTYIDVRSAEEHENLATPRGALCIPAFERAHRVPSPAEDGADPSLPLDDEDYNYENVEWKVLPDFVDRVKAQFKPDAKLLIGYKT-KRSAEACRLLADAGFTELFNVESRTFMKTR 710
            ++++TV +AV+W      GF Y+D+R  EEHE +  P+ ++ +PAF                     D D+  ENVEW  +P F   V+A+F  DAKLLIG +   RS  AC+ L  AGF  L+NVES ++M+TR
Sbjct:    9 FKDITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPAF-------------------TPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVESSSYMRTR 124
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BLAST of mRNA_A-nodosum_M_contig1071.5.1 vs. uniprot
Match: A0A7C2EQK6_9BACT (Rhodanese-like domain-containing protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C2EQK6_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 9.280e-6
Identity = 45/125 (36.00%), Postives = 60/125 (48.00%), Query Frame = 3 
Query:  312 RNVTVREAVEWTMSNDSGFTYIDVRSAEEHENLATPRGALCIPAFERAHRVPSPAEDGADPSLPLDDEDYNYENVEWKVLPDFVDRVKAQFKPDAKLLIGYKTK-RSAEACRLLADAGFTELFNV 683
            + ++ +EA +  + ND  + Y+DVRS  E +    PRGA+ IP     H +P     G  P+                   DF   V+A    DAKL IG KT  RSA AC +LA AG+T L NV
Sbjct:   13 KEISAQEAYD-LLENDKDYIYLDVRSVPEFD-AGHPRGAINIPLM---HFIPG---SGMQPNQ------------------DFQAVVEANIPKDAKLAIGCKTGGRSARACEVLAQAGYTNLANV 111
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1071.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G015_ECTSI4.580e-4458.78Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CME5_9STRA1.650e-2039.26Rhodanese domain-containing protein n=1 Tax=Tribon... [more]
A0A7C2EQK6_9BACT9.280e-636.00Rhodanese-like domain-containing protein n=1 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1071contigA-nodosum_M_contig1071:98670..103459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1253
Hectar predicted targeting categorychloroplast
Exons4
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-22_003290.1
Cds size696
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1071.5.1prot_A-nodosum_M_contig1071.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1071 98705..102937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866458.0891154-UTR-A-nodosum_M_contig1071:98669..987041680866458.0891154-UTR-A-nodosum_M_contig1071:98669..98704Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1071 98670..98704 +
1680866458.141435-UTR-A-nodosum_M_contig1071:102937..1034591680866458.141435-UTR-A-nodosum_M_contig1071:102937..103459Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1071 102938..103459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866458.1008134-CDS-A-nodosum_M_contig1071:98704..989251680866458.1008134-CDS-A-nodosum_M_contig1071:98704..98925Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1071 98705..98925 +
1680866458.111209-CDS-A-nodosum_M_contig1071:101122..1012871680866458.111209-CDS-A-nodosum_M_contig1071:101122..101287Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1071 101123..101287 +
1680866458.1241765-CDS-A-nodosum_M_contig1071:101877..1020251680866458.1241765-CDS-A-nodosum_M_contig1071:101877..102025Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1071 101878..102025 +
1680866458.1333706-CDS-A-nodosum_M_contig1071:102775..1029371680866458.1333706-CDS-A-nodosum_M_contig1071:102775..102937Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1071 102776..102937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1071.5.1

>prot_A-nodosum_M_contig1071.5.1 ID=prot_A-nodosum_M_contig1071.5.1|Name=mRNA_A-nodosum_M_contig1071.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=232bp
MSALFAWLLLDVSADAFITSSSLSSLSFDRERHACQQQYRSPVPTVPSRL
KCQAISKTCGAIPIFRRTCARSQSIPLMSAEEDITPPHTPEYRNVTVREA
VEWTMSNDSGFTYIDVRSAEEHENLATPRGALCIPAFERAHRVPSPAEDG
ADPSLPLDDEDYNYENVEWKVLPDFVDRVKAQFKPDAKLLIGYKTKRSAE
ACRLLADAGFTELFNVESRTFMKTRLQQAWE*
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mRNA from alignment at A-nodosum_M_contig1071:98670..103459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1071.5.1 ID=mRNA_A-nodosum_M_contig1071.5.1|Name=mRNA_A-nodosum_M_contig1071.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4790bp|location=Sequence derived from alignment at A-nodosum_M_contig1071:98670..103459+ (Ascophyllum nodosum dioecious)
CATTTTCAAATTCGACAACAAAGGTGCTGTGCAACATGAGTGCTCTGTTT
GCGTGGCTACTGCTTGACGTATCGGCAGACGCCTTCATAACATCTAGTTC
GTTGTCCTCGCTCTCGTTCGACAGGGAAAGACATGCCTGCCAACAGCAAT
ATCGATCTCCGGTACCGACTGTACCCTCCAGGTTGAAATGTCAAGCTATT
AGCAAAACGTGCGGAGCTATCCCCATATTTCGACGCACATGTGCACGATC
TCAAAGGTGAGGCCATCGTCTGCCGATGCATTGCTGCATCACCTGAGCGG
CACGGATGCCAGGGACTATTTAATCGATACAGCATGAAGAGTCCAGCATG
ATTTTGTGAAAAAGTTCTGCGAGCTTGCCGCGTTGAACGAAAGTCGCACG
GTCAATTTTGTACCTGGTAATATACAGACTAATCCTAGTAACTGGTACCA
GTGGATGATACAGAAGTGTAGTGTTTATAGTGTTTGTTATACGAGTTTTT
GTACTTATGTTTGATGTATTGAGAGTCATCACATGTGTATACTGGTACTT
TCAATATGCCCACTTCATACCAATCCTGTAGTTGGTGTGGGAAAGAGAGG
CGCATATGAATTGGTCCACGGTGACCTGCCAAGCAGCACCCGTTTGGAAC
TACCTCGAGATTTACTGGCCCGGTGCCGACGGACCCTCGGAAGTGAACGC
CATCGGTACGCAATTGCGTGACCCGATAAAGTCGGGACTTACCCGATGGC
GTATGGCGGTTCAAATAACTAAATGGACGTCGCCGCGGAACTCGGGAGGA
ATCGCGTAAGTACCAGATTAATCGTAAGTATGGAGATGAGCAGGCTGATG
CGGGACGGGACTGCCGAACCCGTCCCTCAAGACCAAATTCTCAGGCGCGA
ACAAGGGCAGGGAAGAAAATATTTTTCCTCTTCAGCTGACCAGGTGTAGG
ACTGGCAACCTTACCCGGGTGATCCTTACCCTTGCCATATGTGATGACTA
TACATACATACATACATAGCAGACTAGGCATCAACCGGTATTCTCCCCGG
CATCACATCGACAGGGAAAATGAGTTTTCCCCGTCCCCGTTGGCGCCTCT
GAGAATCTGGTCATCGAATGAAACCAGGCTGCACACTTTTCGTTTTCCCT
GTTTGATTCACCCCAAGCAGTGCAGCAGCAGTGGCAGCAACCGTACCCGG
TAGTTGGTGCCCAATCTGCTGAATTCGATGCATGGCGCGACTATTGATAA
CATTGGGGAACCCAACGAAATATCATACATATTGATAGAACTAAACGTGG
AGTTTTTGCTCGAATCAACCGACGTTCCCAGCTAAACGTTTCGACACAAA
GTTTCCCCTCTCTGATTAGGTGGATGCTCGAAAGGTTTATTATAGTTGCG
TTCAGATTTTTCCGTAAACTCTTCTTGGTACATACTCGTGCCTGGGAGGA
AGCTTCCAGAAATCGTTTTTACTTTTAACATGGTACTTGAGAGGGCTTAA
CAAACGGTCGACCGCCTGTTTATTTTCCAGCCTTGTTTGGGCAGCGAGAT
CAGGAGCCCGAGTACAGCACCTTCCCAAACTAAAAGCAGTCCCAAGATAC
GGCTCAGCAAGGATCTACCGTGAATCAACCCCGCAAACCTGTGCACGGTA
CAAAATGTAAACCCCAAATCAACTTTGTTCTTCACTTGACTTTACTATAA
CTTTCCTGAAAAATGTCGTACTAGTTTGGTACTAACAACCTCTTAACACC
CACGGTTAGAGACGAAGTAGGCTTACCCTAATTGGGATATGTAAACAGTG
TACTGTAAAATGACTGATCATGGTGGCCGGCCCATGTAAAAAAGCGCGAC
CAGCACAGGACTGTCAAGATGAAAAAAAATAGCCGTTGTCAGACCGATAG
TACCAAAAGGGTTAACTATTAATATAACAATCGCCGAGAAATATCGGTTG
CAACAAAAGCAGTACGTGCATTTAATAATATTGCACATCATAGCGCTGTT
AATACGGAGTAGTTGACAAAAACAGTTCAGGTACAAACTCAGCGGGCCTG
ATCACGTTTCGTGTTCGTTTTTAAAGAAAAATCTGAACGCATCTAGACCT
TCTGAGCATCCCCTAGTCAGGGGGGGGGAAATGTCAAAACGTTTAGGTGG
GATCATAGGCTGCAAAGACAAAACCTCTAAATGGCATTTAATCGGGTTCC
CCGATGGCAGTAACATTAGGTCAACAGTATAATGTCGGGGAGAAACCCCC
CGTTATACTAATCGCCATGCAGGGACACCAAACAAAGTATAGACAAAAGA
CATTGTTTTACGAGTTTGGAAAGGCCTATTGCTCGTTATAGTATTAATCT
AATAAATAGCACGTATTCATTAATACTGTAGTCGTCTTACCACCTTCTTA
AATTGCTTGGTAACTACCGCTACCGATGATGTTCCTCCTGCCTCTGACTA
CAGCATCCCTTTAATGAGCGCCGAGGAGGACATCACACCGCCTCACACTC
CAGAATACAGAAACGTCACGGTGAGGGAGGCAGTGGAGTGGACCATGAGC
AACGATTCAGGTTTTACCTACATCGACGTGCGTTCAGCAGAGGAGCACGA
GAACCTGGCGACGCCGAGGTGACTTTATCTTATGAAGGGAGCGCCTATTT
GCAGTCCATGGACTTTCAGAGAGAACCACAGTCCAAACATCATCTTTGCT
TCTTAGATTGTTTTTTTTTACCTCTTGGCCAACCCGATCCAACCCGACCC
ATATCGCTAACGCCAACCCAGACCCCCACCCCAGCTGACTGCGTGGTCCC
AATTCATAGCTGGCGTCCGCTTGGTCATAGTACCGTGTGGGCTGATTTTG
TGTGCGTCTCTGGTTCGGTCTTGTATCTGGTGCATACCCAATCTAAGAAG
TAAAGATCCATGGCAGTGGGCTGGTTTCTCGGCTGAAAGTCCATGGACTG
CAAATaggtaaatcCCCTATGAAGGGGTTTCGTAGATAAGAAGTATGCAT
CAGGTGGTTGGACCAAAGCTACGATTTTCATCACCGGAAGAAGAATTAAC
TGATCTTCGGGGGCATAAAGTATGTGGTAAAACGTCTACTACAAATTAAC
TGTCAAGTGCCTGTTGTATTTCAATTTACAAAAATTGTTTACACGCATTA
CAAAAGCAAACTTTCGGATACATACATTACACCATATCATAAATGTATAA
AACGACAGGGGGGCTTTGTGCATCCCTGCCTTCGAACGAGCCCATCGTGT
GCCGTCGCCAGCAGAGGACGGGGCGGATCCCTCACTTCCATTAGACGATG
AGGACTACAACTATGAAAACGTGGAGTGGAAGGTTTTGCCTGATTTCGTG
GATCGGGTGAGATTTGGCGACGTCGTCCTGTGGGCCGGCCCATTTACCCT
CTCTGTAAATGTGCCCTTTTCTATATTTTGGCATTGCAGCATCTCCCTCG
CATGCCGTGGGTTGCGCAAATGTATGTCAGAAAGAAGTCGGGGTATATAC
AGTACACAATGAAAACAGTAACATGTACCCTAGTAGCAGGTATGTTGAAA
GTGTGAAGGAGCAGTGTGTATGTGTCTGTGTGTGTGTGTTTTCTTCCCAT
TCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTCACACAGGA
GGAAGGTCACACAGGATTTCTAATCCACCTTCTTTCTGCGGTGCGTACCT
TAATTTTTCTCGCTAGGAGGATTCAGCCATTCCTTTCCCTCGTCGACTGT
GAAGTCGAATTTTTGTGTACTAACGATTTAATCGTTCTCCACCCGTTGTG
CATTTTTATTTAAGTTTTTTAGTTTTTTAGCGAGAAAAATTCCGTTTGCC
GGGATCGAACTCACGTCCCAACGTGTCAGAGGGTTACGAGGTACCTCTGA
GCTACCGGGGCGACCGGCCTATTAATAGCAGTAGATAACGGAAACCTACC
AGCAGAGAGGTAGGACCTAAACGACTCCAAATGTACAGTACGGCGTGTAT
ATTTAGCGAAGATTGCTCATCGGTCCCTACGCCGCATGCACAAGCAGACG
TGCTAAACAGTATGCGTGCCAACAACAAATGTTTCGCGGTGTTCGCCGCT
CGGCAGGTGAAGGCCCAGTTCAAGCCGGATGCGAAGCTATTGATAGGCTA
CAAGACAAAACGTTCGGCAGAGGCGTGTCGCTTGCTGGCCGACGCCGGCT
TCACCGAACTTTTTAACGTCGAGAGTCGGACGTTCATGAAGACCAGGTTG
CAGCAAGCGTGGGAATGACCGCGTCTCCATGGGCAGCCAGCCGACCAAAT
TACTTTGTAATGACACTATCGAAAGACGGTGATGCTGTGGGTATAGTGAG
TGTCGTCCAGGGTTAGCTTCGCACGTCACGCGACCCGTGGTTGCGCAAGC
GCACCACATTCGCTCGACGATGGTGGTCAAGCAATGCTGGACGGACATCT
GGCACATGTATCATGGGTTTGGCTAATTTTTACTCGCGAGAGAGTTCGCT
AGTTGGTGTAGCAACTCGAATTTATCATCACAGGAAACATTTTGCAAGTT
TTTATTCTGCGACGACGCTCATCTCAGCAGTGTAGCTGCCGCAGACCTTG
CCAACTTTGTTCTGCTGAGTACAGTAATGATATTGTGAACTTCTCGGCTC
TGTCGACTTCGTGTAATATATATATATATTCCCTAAAGGCTGTCTGCTGC
GAGGCTTATATTAACTCTCTCATGAAATTAAGATTTGGGTACCCTGATGA
AAGCCTTAGAAACGTAAAGGTAATCAGTGTAGCTCACCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1071:98670..103459+

>mRNA_A-nodosum_M_contig1071.5.1 ID=mRNA_A-nodosum_M_contig1071.5.1|Name=mRNA_A-nodosum_M_contig1071.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at A-nodosum_M_contig1071:98670..103459+ (Ascophyllum nodosum dioecious)
ATGAGTGCTCTGTTTGCGTGGCTACTGCTTGACGTATCGGCAGACGCCTT
CATAACATCTAGTTCGTTGTCCTCGCTCTCGTTCGACAGGGAAAGACATG
CCTGCCAACAGCAATATCGATCTCCGGTACCGACTGTACCCTCCAGGTTG
AAATGTCAAGCTATTAGCAAAACGTGCGGAGCTATCCCCATATTTCGACG
CACATGTGCACGATCTCAAAGCATCCCTTTAATGAGCGCCGAGGAGGACA
TCACACCGCCTCACACTCCAGAATACAGAAACGTCACGGTGAGGGAGGCA
GTGGAGTGGACCATGAGCAACGATTCAGGTTTTACCTACATCGACGTGCG
TTCAGCAGAGGAGCACGAGAACCTGGCGACGCCGAGGGGGGCTTTGTGCA
TCCCTGCCTTCGAACGAGCCCATCGTGTGCCGTCGCCAGCAGAGGACGGG
GCGGATCCCTCACTTCCATTAGACGATGAGGACTACAACTATGAAAACGT
GGAGTGGAAGGTTTTGCCTGATTTCGTGGATCGGGTGAAGGCCCAGTTCA
AGCCGGATGCGAAGCTATTGATAGGCTACAAGACAAAACGTTCGGCAGAG
GCGTGTCGCTTGCTGGCCGACGCCGGCTTCACCGAACTTTTTAACGTCGA
GAGTCGGACGTTCATGAAGACCAGGTTGCAGCAAGCGTGGGAATGA
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