mRNA_A-nodosum_M_contig1070.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI) HSP 1 Score: 391 bits (1004), Expect = 5.840e-126 Identity = 204/313 (65.18%), Postives = 237/313 (75.72%), Query Frame = 3
Query: 624 QPRQSWMTNQAVVWDKCMVLAAQALSYADTVYNMLEDNAGNKFTEAGVHLRTAAGIFERLHKVELPRWVGDTAKEPRLVEADPGTCEGLVKFCLAEAQQMAIGKALVAGTTPKTLLARLCGGVVKLLEDTVSAMRKGGASSPYEKLDAPFLLHIAFNQTMFTGLAYRFAAEIAWSKDRFGMGVAYMMEACKYLKERRDPVSVGLPPLSGSLRDVYHEVQDLRGEFRALHDSYAKDNNSIYFDSIPSSDMLDLLPEPLMMMKPIPSEGGAPPAKILSFRAPNSAEKEEAEEAKA--GDQKTDEQLARELFEKLN 1556
+PRQ W+TNQAVVWDKCMVLAAQALSYADTVYNMLED+ G+KFTEAG HLR AAGIFERLHK ELPRWVGDT++ PRLVEA+PG CEGLV FCLAEAQQMAIGKALVAG TPKTLLARLC GV LE+ VSAMRKGG+SS Y KLD+PFL+HI+F ACKY++ERRD VSVGLPPL+G LR++ H+++ L+GEFR L D+YAKDNNSIY++ +P DMLD LP+P++MMKP+PSE APP + LSFRA SA EE ++A KTDE+LAR L EKLN
Sbjct: 116 RPRQDWITNQAVVWDKCMVLAAQALSYADTVYNMLEDSQGSKFTEAGEHLRKAAGIFERLHKAELPRWVGDTSEAPRLVEAEPGICEGLVHFCLAEAQQMAIGKALVAGKTPKTLLARLCEGVRGQLEEAVSAMRKGGSSSAYHKLDSPFLVHISFQHA----------------------------SACKYVEERRDAVSVGLPPLAGPLRNISHDLKTLQGEFRQLRDAYAKDNNSIYYEPVPDLDMLDPLPQPVVMMKPLPSEEEAPPTETLSFRATGSAPGEEPKDASGLPDADKTDEELARALHEKLN 400
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Match: A0A836CJ99_9STRA (BRO1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ99_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.520e-56 Identity = 123/285 (43.16%), Postives = 159/285 (55.79%), Query Frame = 3
Query: 627 PRQSWMTNQAVVWDKCMVLAAQALSYADTVYNMLEDNAGNK---FTEAGVHLRTAAGIFERLHKVELPRWVGDTAKEPRLVEADPGTCEGLVKFCLAEAQQMAIGKALVAGTTPKTLLARLCGGVVKLLEDTVSAMR-KGGASSPYEKLDAPFLLHIAFNQTMFTGLAYRFAAEIAWSKDRFGMGVAYMMEACKYLKERRDPVSVGLPPLSGSLRDVYHEVQDLRGEFRALHDSYAKDNNSIYFDSIPSSDMLDLLPEPLMMMKPIPSEGGAPPAKILSFRAPNS 1469
PR +W++NQAVVWDKCM L +QAL++AD+VYNM+ AG + AG LRTAAG+ ELPRWVG+TAK R EA PG CE L CLA+AQQMA+GKAL G TP TLLA+LCGGV ++ +S +R K GA+ Y KL P L H AF + LA+ F A AW+++ +G +A+ L L E+ LR E A SY +DN +IY+D +P P+ ++MMKP P PP L FR P +
Sbjct: 118 PRVTWISNQAVVWDKCMALISQALAHADSVYNMVGAAAGGDDAVYAAAGRELRTAAGVLAHTASEELPRWVGETAKGERPPEAVPGVCEALSTLCLAQAQQMALGKALAGGKTPPTLLAKLCGGVADQMDAALSTLRDKAGAA--YAKLAKPLLAHAAFQAALQRALAHLFLASHAWAREAYGAAIAHQRRGAALLAR-----------LXXXXXXXXXELAALRAEAAAALASYERDNGAIYYDPVPGEPAAP--PDGVVMMKPEPYT--VPPLVALRFRPPRT 385
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Match: L8HG99_ACACA (BRO1 domain-containing protein n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG99_ACACA) HSP 1 Score: 73.2 bits (178), Expect = 6.960e-10 Identity = 60/185 (32.43%), Postives = 95/185 (51.35%), Query Frame = 3
Query: 891 VKFCLAEAQQMAIGKALVAGTTPKTLLARLCGGVVKLLEDTVSAMRKGGASSPYEKLDAPFLLHIAFNQTMFTGLAYRFAAEIAWSKDRFGMGVAYMMEACKYLKERRDPVSVGLPPLSGSLRDVYHEVQDLRGEFRALHDSYAKDNNSIYFDSIPSSDMLDLLPEPLMMMKPIPSEGGAPPAKI 1445
+ CLAEAQQ+A+ KA+ GT+ +LLA+L + + A++ A + E +++ F L++ N +F+GL Y+ A A + +G VAYM +A + E+ P S +VY +D E L +YA DN++IY+D +P + L E +MK +P APPA I
Sbjct: 245 INLCLAEAQQIAVQKAMAKGTSD-SLLAKLILDISQKYNIASFALK---AITGVEFVES-FRLYLTLNNLLFSGLTYKHLARDAHANGEYGRAVAYMQKAVGEVPEK--PKGRFTDAAFQSFVNVYGAERD---ELVKLAKAYASDNDAIYYDRVPPESEVVLPAEGRSLMKAVPY---APPAPI 416
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Match: K3X5X5_GLOUD (BRO1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5X5_GLOUD) HSP 1 Score: 66.2 bits (160), Expect = 1.810e-7 Identity = 67/266 (25.19%), Postives = 112/266 (42.11%), Query Frame = 3
Query: 660 VWDKCMVLAAQALSYADTVYNMLEDNAGNKFTEAGVHLRTAAGIFERLHKVELPRWVGDTAKEPRLVEADPGTCEGLVKFCLAEAQQMAIGKALVAGTTP--KTLLARLCGGV--------VKLLEDTVSAMRKGGASSPYEKLDAPFLLHIA-FNQTMFTGLAYRFAAEIAWSKDRFGMGVAYMMEACKYLKERRDPVSVGLPPLSGSL---RDVYHEVQDLRGEFRALHDSYAKDNNSIYFDSIPSSD--MLDLLPEPLMMMKP 1409
+++ MVL+ +A+ + + K +A AAGIF+ + ++ + L + + L CLA AQQ++I KA++ P K++L +L GG L+ + + G + DA LL A F + + +AE+ R G + Y A ++R +GLPPL+ S+ R + + R LH Y K+N+SIYF+S+P D +L +MKP
Sbjct: 96 IFELPMVLSTRAVLLLNRAKCVSRARDREKVPQAVAFCLEAAGIFDYILELMNAHLMDGIEAPSSLPDLSLDVLQSLQGVCLAIAQQLSIVKAVLHFDRPYSKSVLVKLHGGCQASFQLFEATLVRNCALSSSSGAMNVTVPCRDAKTLLSFASFFGRLHKAQVFLLSAELEHETHRIGPAIVYAKIAKTLFQDRTSIGGLGLPPLTDSVAVERIIGPLLATKRAAVDQLHADYTKENDSIYFESVPDHDATLLSATLSQAFIMKP 361
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Match: UPI000644ADCF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644ADCF) HSP 1 Score: 58.9 bits (141), Expect = 1.810e-5 Identity = 48/243 (19.75%), Postives = 106/243 (43.62%), Query Frame = 3
Query: 633 QSWMTNQAVVWDKCMVLAAQALSYADTVYNMLEDNAGNKFTEAGV----HLRTAAGIFERLHKVELPRWVGDTAKEPRLVEADPGTCEGLVKFCLAEAQQMAIGKALVAGTTPKTLLARLCGGVVKLLEDTVSAMRKGGASSPYEKLDAPFLLHIAFNQTMFTGLAYRFAAEIAWSKDRFGMGVAYMMEACKYLKERRDPVSVGLPPLSGSLRDVYHEVQDLRGEFRALHDSYAKDNNSIYFD 1349
+++ + ++ ++ MVL + +++ + Y++ E + + F + H++ AAGIFE +++VE+PR V T + +E + C++ + + KAL GT+ + + C K + ++ K A + Y++L F ++ N + + + A + +G+G+ Y +A L + + P + V L E + + ++N +YFD
Sbjct: 103 KTFNSGYSIRFELVMVLMSLGMAHYNRAYDLNESSNEDNFDDNAKLISNHIKIAAGIFEFINRVEIPRGVHQT--DEFQIECSSNMSLAMTMLCISLGNALTVRKALKQGTSHQVIAKISCEAWHK--SEMTKSLLKDDAHN-YKRLPKTFRNYLTSNLLLQHAITLKEMAMASVDSKHYGVGLTYFSQAMPLLSKIKKPSDARQQSI----------VTSLMSEIERENQTLTRENQVLYFD 330
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Match: A0A2G4T4R6_RHIZD (pH-response regulator protein palC n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4T4R6_RHIZD) HSP 1 Score: 58.2 bits (139), Expect = 3.530e-5 Identity = 61/246 (24.80%), Postives = 109/246 (44.31%), Query Frame = 3
Query: 675 MVLAAQALSYADTVYN--MLEDNAGNKFTEAGVHLRTAAGIFERLHKVELPRWVGDTAKEPRLVEADPGTCEGLVKFCLAEAQQMAIGKALVAGTTPKTLLARLCGGVV---KLLEDTVSAMRKGGASSPYEKLDAPFLLHIAFNQTMFTGLAYRFAAEIAWSKDRFGMGVAYMMEACKYLKERRDPVSVGLPPLSGS---LRDVYHEVQDLRGEFRALHDSYAKDNNSIYFDSIPSS-DMLDLLP 1385
++ +YA T+ +L +N + +A L TAA +F + +P W A E R +E L K LA+AQ +AI KAL + T K+L+A+L GV ++ +++++ GA +++ + + ++A + + +F A A + G V + E CK +S+ L S LR + E E L Y N+++ ++ +PS D+ L+P
Sbjct: 119 LIFVLMTYAYACTLQTNYLLAENNPALYNKAADTLNTAASVFHFIANTVIPSW--SNAPENRPIETVRELAVALSKMALADAQAIAIKKALASNNTSKSLIAKLYMGVADQYQMAHGLITSIK--GAQ---DEVSSDLIKYLADGILFYKAMTKKFLAMHANDSQKMGQAVGFAKE-CKADLRLLQHMSLSKKHLKKSAIALRASHEEE-----EVNELISRYTMINDTVSYEPVPSKQDLQRLIP 351 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1070.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1070.10.1 >prot_A-nodosum_M_contig1070.10.1 ID=prot_A-nodosum_M_contig1070.10.1|Name=mRNA_A-nodosum_M_contig1070.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp MTNQAVVWDKCMVLAAQALSYADTVYNMLEDNAGNKFTEAGVHLRTAAGIback to top mRNA from alignment at A-nodosum_M_contig1070:138381..144237- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1070.10.1 ID=mRNA_A-nodosum_M_contig1070.10.1|Name=mRNA_A-nodosum_M_contig1070.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5857bp|location=Sequence derived from alignment at A-nodosum_M_contig1070:138381..144237- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1070:138381..144237- >mRNA_A-nodosum_M_contig1070.10.1 ID=mRNA_A-nodosum_M_contig1070.10.1|Name=mRNA_A-nodosum_M_contig1070.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig1070:138381..144237- (Ascophyllum nodosum dioecious)back to top |