mRNA_A-nodosum_M_contig107.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig107.16.1
Unique NamemRNA_A-nodosum_M_contig107.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig107.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig107contigA-nodosum_M_contig107:543554..551035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog29908.U7PL37
PFAMsFungal_trans,Zn_clus
Model size1579
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons6
Evalue0.000453
EggNOG OGs28KR8@1|root,2QT79@2759|Eukaryota,39CD3@33154|Opisthokonta,3NWDE@4751|Fungi,3QS81@4890|Ascomycota,213AM@147550|Sordariomycetes,3UQ1E@5151|Ophiostomatales
DescriptionGAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
Cds size879
COG categoryB
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig107.16.1prot_A-nodosum_M_contig107.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig107 543631..550412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866455.132083-UTR-A-nodosum_M_contig107:543553..5436301680866455.132083-UTR-A-nodosum_M_contig107:543553..543630Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig107 543554..543630 +
1680866455.2143908-UTR-A-nodosum_M_contig107:550412..5510351680866455.2143908-UTR-A-nodosum_M_contig107:550412..551035Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig107 550413..551035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866455.1433423-CDS-A-nodosum_M_contig107:543630..5437011680866455.1433423-CDS-A-nodosum_M_contig107:543630..543701Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 543631..543701 +
1680866455.1543853-CDS-A-nodosum_M_contig107:546233..5463171680866455.1543853-CDS-A-nodosum_M_contig107:546233..546317Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 546234..546317 +
1680866455.1717176-CDS-A-nodosum_M_contig107:546550..5467071680866455.1717176-CDS-A-nodosum_M_contig107:546550..546707Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 546551..546707 +
1680866455.1820443-CDS-A-nodosum_M_contig107:548277..5483971680866455.1820443-CDS-A-nodosum_M_contig107:548277..548397Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 548278..548397 +
1680866455.190367-CDS-A-nodosum_M_contig107:549593..5497321680866455.190367-CDS-A-nodosum_M_contig107:549593..549732Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 549594..549732 +
1680866455.200337-CDS-A-nodosum_M_contig107:550104..5504121680866455.200337-CDS-A-nodosum_M_contig107:550104..550412Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 550105..550412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig107.16.1

>prot_A-nodosum_M_contig107.16.1 ID=prot_A-nodosum_M_contig107.16.1|Name=mRNA_A-nodosum_M_contig107.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=293bp
MEIQTTHAAADFRKSCDFCTSRKRRCDRVGVSPCTLCSEKGASCTFRQKG
RRGPKPKVHYRNLLAPAEAASASAGVGNGDGPEKGVGPNHLEVPKIPNTR
PAPDVSLESKIEMLERRSVEVDKQQEGVLAALESGGSFRGIEGKADLVDT
LKSFRKEKEYLLQLQAQLQEERLILLRMGSNTSKRLLPNPAIARDSEEAK
RARVPSSVPPLPLKMEQSIARSSSFAAAAAASTPHAVDVHVSPRKRRTND
DDDEERETHSSGPLCSGEPGETRASRANRTRSPSGGAWAIEV*
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mRNA from alignment at A-nodosum_M_contig107:543554..551035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig107.16.1 ID=mRNA_A-nodosum_M_contig107.16.1|Name=mRNA_A-nodosum_M_contig107.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7482bp|location=Sequence derived from alignment at A-nodosum_M_contig107:543554..551035+ (Ascophyllum nodosum dioecious)
AAGGTGGTCAAGAGTATCGTTATCGTGAAGGAACGGCGAGGTCGGCAAGC GCGCCCCACCTGCAGCAGTGGCGAGACATGGAGATCCAGACGACTCATGC GGCGGCAGACTTCCGGAAGAGCTGCGATTTTTGCACCTCTAGGAAGAGGT GGGTCATCTATTAAAAAACACATAACAAACGTTTTGGGTACAGTAATGGC CGTACATACATAGATAGAATCGCCAATGTTGGGTTCCCGGCCGATTGCTG ATCGAACGAGCTTGTGTCTCCCCTCCCCCCCCCCCGCTTATCACCTCTCC CCTCAAACCACCGTTACCCTAACCCTAACCCTGATCCTAACCGTAACCCT AACCGTGACCCTAACCCTCCTCGGGCGTGTTAAGCAAGTAATGTCTCCAA GAGCATGGCCGCTGTACCGCAGATGTTACAGCCGCTGTACCGCGTTCAGC TGCAAAAAAAGAATCCTGTTCACGTATCGCCAGGAAAATAATACAACTCG AGCACACGTAGTAGCATTTCGTCGTAAGTGTTGAGTCCGTATCGGAGGCG CAGGCAGCATTGTCGTTAGCATTGTCAGTGTCATAGTCGTTGAGGAAGCC GCCGCAATAGTGAAGGTAGCACAACGCCCGCTAAATCGATCCACTGGCAA CCAGAACATGACATGAGTGAGCACCAGATTCAGCCTGGGTATGGAGATGA GCAGGCTGACGCGGGACGGGTTTACCGAACCCGTCTCGCGAGACCAAGTA TTCAGGCGTGAACGCGGACAGGGAAATATTCATTTCCCCTGTTCAGCTGA CCACGTGCAGGATTGGCAACCTTTTACCCGGTTGATCCATACTCTTGCTA TATGTGTGACCATACATACATACATCACCCCACTATTACTAAACCTGCTG CTGGAGGTAGCTTATATACCATCGGTCGCCACGGTGGTTCAGTTGGTGAC GTTGAAACCTTCTGACGTTGGGACGTGAGTTCGAATCTCGGTGCAGTCAC ACGAACTGAGATTTTTCCTCACTATAATAAATAAATAAATAAAATATAAT GCCCAACAAGTGGAGAACGATTAATTCGTGTGTACACAAAATTCGACTTA CACGGTCGACGAGGGAAAGGAACGGCTGAATCCTTCTCACGAAAAATTGA GGAAAGCACCGCAGAAAGAAGGTGGATGAGAAATCCTGCGTGACCTTCCT CCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACTTCCACAAGCCT GACGTCCAGAATAAATGGGATGACAACACACACATAGACACATCTCTTCA AAGCCTTTGGGCTATAAGACGCACGGAGTACCTCTCAGCATGGGTGCCGT TCTGTCGAGAAAGGCTATATAAGACACGCTTGGCGGCGAGATGAGGAAGG AAGGAAGGAAGTCTGACCGAAGGTTGTCGATTACGTGGTCGTGCTATTTT TGCACTGTTGCAAAGCTCTAACGCTACACAGCACTAGGCTATCTGTCAGT CGGCGTGTTCCTCCGTCGAGATAAAGTCGCCCGCAGAGATATGGCACGTA CCGTCAGGACGGCGAATGAATCGGTGCCCGTACTGTTCTTGCCCCCCCCA CCCCCAACTCATTTAGGGCAAATCGCGCGCAAGCCGCTTTTGACTCGACA ACTCCAAACCACGCCGAGCTCTGTGCGTACAGTATCGGATAATTTGATCC GTTGGATTCCCCGGATTGCTGTGAGCTGATAAGTCCCATGAGGCACGccc cCCCCCCCCCTCCCCCAAAGCCCTCTTCCCCACCCCCGAACACTCAGCCG CGCGTTACACCAAGCGAAGCCCTCTTCCTGGGCAACACCCCCACGTGCGT GGCTGAAAAGCCGCATGTACAAAGCAGAGCACCTTGTGTATAGCCGCGTC CAATCGTTTGGATTCAGCTGCCATCGTCTCGCTGGCAGACAGGGCATGGT TGAAGTGGCTGTCGCTCTATCGTCGCGTGCTCATGAGGCCCTAAAGCTGC TTTTGGTGCGAGAAACACGATCGCCTTGTACAGTACAGTAGGTCGCAGCG TCGCAAACGGCGTTGCACGAGCGGGCACAGGAGGAGGGTGTTCCTTGTTG GGCCATGAATTTACTTCCATTGTTTTTGCAGCGGCGATGCAGCGTAGTGT GACGCGTTGCAAACTTAAAGCAGGTTTTCTGTTCGGACGTCTTCGCACGT TATGGACAAGGGAGGGGAGGTCGATCAATGTTTCCCCCTACTGTGCCCGG GTTCTGAGCAAACCACCTTGCAGCTCGAACACGGCAAGCGATATTGTCTT ACGGCGTGCACTCCAGGGTATCGTAGGGGCGCGCCCCGTGAGCGATTTGT CTGCAAAACGATGGTTTCGTTCTTTCCGTGGTTGTGTCGCCGCCGTTAAT GGGCCCAACACTGGCACTACTATTTTTTTGTGCGGAGGCATTTTTACTCT GATCGCCCCCTCTAGCCCGAACCACTTTTAAAACATGATTTATGGACACA AGTCGCGTCTTGGCGTGTCTGCTTGGCTTGTGGCAGCTCACTAATGAAGA ACATTGCTCACCGCCGTATGCACAGTACTGCGCGGTGATTGCGTCTCTGA TCGATCCATGCATTCACCTGCATCTGCCGATCTCGATTTCGACCTACAGT ACCTGTACCGCCCGTGCCGCGTGCCTCCAGGCGTTGCGACAGAGTTGGCG TTAGCCCTTGCACGCTGTGCTCGGAGAAAGGAGCGTCTTGCACCTTTCGC CAGAAGGGTAGGAGGTGAGAGAGAAAAATTCATCGTACCCCAACAGCTGC CGCGTCTTTTCTCGGTCTCCCGCTCCCTATTTATTGCTTCTCTGGCGGGG GGCGAAAGCCATCGAGCCTCCCTTTGACCACGTGTCGCCTCGCCTTCTCC TTCTCCCTGCTTTATCCCCCCCCCCCCTCCCTCCTTTATTTTCTTGCCTT TGCGCCATGCGGAACTCCCACGCTCTCGGCCCTCACACCCTGTACAGGGG GCCTAAACCCAAGGTGCACTACCGGAACCTCTTGGCACCGGCGGAGGCGG CCTCCGCCTCCGCCGGCGTGGGCAACGGAGACGGCCCAGAGAAGGGTGTT GGTCCGAACCATCTGGAAGTACCCAAGATTCCGAACACCCGCCCAGCACC TGACGTGAGTGGTAAATCTACATACTACTTCGCATATACTATGAATCAGG TGCCTCTCGGCGATTGTGGTGGTATATAGCTCTTGCGTTTTTCTTTTATA GGCCTACATAGACCACCGGAAGAAGCACAAAGCACTCAGCTATCTGACCG ATGGCTGTGATTCGCTCGCAAAAGTGTACAACGAGTGCGGTGGGCGGCAG TCGAGGAGTTGAACTAGGGTCGCTGTTGCGTCGCACAAGACTTCGTTTAC CAGCTAAAAAAACGATTTCTCCATCCCAGCGCTGTCCCGAGCGCTATTTC CAGTGACAATGTCTACTTTACTCCCACATACGACTCTGCCTGCAATTTGG CGAGCTAAGGGACTTCGTGTGGCGTGAGTGAACTGTATTTGAGCGGCTGA GACAGGCTTTTGCACCAAATGGTGCACATCCGATGAGCAAACACCGCGAC CGCCGTCCTCAGCGCACCACAAAACGTTTCGGCCATCGCACCGATGAAAC TCGTTCACAATACCCTTGGCTATAATATCTAGAAGAGTTATACTGTGCGT GGACGTGGCCTCACGGACAGCGAGCTGGGGAAGCTCTGTTGGGGAGAGGA GCAAAGCACCATTCGAGAAACCAGCCGAGAATCAATGTTGTTTTTACAAT ACGAGAATGAACATAGGTTGTTTTCGAGGTAGGGATGAGCTCAATGCGTG CGCGGATTCTCCCCGGTCAACCACTACAGTTAAGGGCGCATGGTGGAGCT AATCTGTAGTCTGTGATACTCCAAATAGGCTGCCCACCCTCTGTTCTTGG CACGATTAGTAAAGATGCGCACGCTACGCTGCGATATGGGGGAGGCCGCA AGCGTGTTTTAGTGTGTTTATGGTTAACGCCAACGGCGTGGCGAAATGGA TCGAGCAGACCGTTTTTTATAAGCGGTTTCTGTAACGTCTGTGGTTCATT TTGTACCAATCCAGCAGCACCCTGTTTCACGCGGCGCAACTGACCCTTAG TTCAGCCAAGTCACGCTTGAGGCACAATAGTGCCCCGGTTCGCAAGACAG ATGTCAGTATGGCCACGACTGGCAGCTTTCTTCTGGTTGCTCTGGTGCAC ATCCGGCCTAGATACAATCCACAAGTACCGCGGCTCGTTTTTTTCGGTTA CAGGCCGTGCACCGGACACCGGGCCGAGGCAATCATTGCTTGGCGGCCTC TCTTGGCTGGGACGTATGAAACCTATTGCTGCTGCTATTAAGAGTTCGTC TTTCTGAGATCATGATTTCTTCATCACCTATCACAAGAGATTCCCGGTCA GATTAGATAGATAGATAGATAGACGTCGTGAGAAATTGTGGATAGGTAAT TTGAAATTGCAGCAGTTCTTTTTGGCCAAGTTTTTCGCCAGGTAAAAATA AATAAATTGAGTATTATGTTTCAGTCAACGCTCTTGGCACGGCCGTTGGG CAAATAATATTAACAATGTTCCTGTCAATGGTTTTGGCACGCCGTTCGGC AAACCGTCGAGTGTGCGTGTTTGGCCCCCCGGTTGATATCTCTGTGCTTG CATCGCTCGCTTGAATCCCTCCAGGTGTCGTTGGAGTCGAAAATCGAAAT GCTAGAGAGGAGAAGCGTGGAGGTCGATAAACAGCAGGAGGGGGTGCTAG CTGCGTTGGAATCCGGCGGTTCTTTCCGAGGCATCGAGGGCAAGGTGGGT ATCGATTTGATTCCGACGTCCCCCCCCCCCCCCCCCCAATAGATaAAAAC AAAACAAAAAACGCAGCACAGCAGAAGAAGAAATACATTTGTTAATGTTA ATACAGCTCTATAGCCTATACCAGTAGCTCTATTAATAGTACAGTTGTGC TGACAAGGGAAGATGTTCTCGACCAGATAGCATTCCCATCGAGAGCACGG TTGGCGAAACGAGCTTTGGCCTAGCGGTGCTGTCACGACTTTGTCCATCT CCCGGTGCTGGCCCTGTCCGAGGGGCGGCCTAGTGCAGGGGTCAGCTCTA AGAGTGTCCCTACATGCTGTTAAGGTTCTCGCGGGACTGTAGCTTTCAGG TTTGGTTTGGCTTACACTTTTGGCAGGCGTTTGGAGCCCACCCTGGTGTT AATAATAATAGTGATACATAGTGATATAGTGATACATAGTGATATAGTGT AGTGATGTAGTGATGTAGTGATATAGTGATATAGTTATATCGTATTATAG TGGTGTAGTGATACAGTGACGTATTCGTCGGGTTGTAATTGTGACATTTG TTATTGGGAAGATGGATTGTATGAAATGGCTTATTAATAGTGTAACAAAA CATTTCCGTCAGACTTGAGATTCTGCGGCTAGACCACGGTTGACCCCGGT TAGGCCCCCAGAGTAGAGGTCTACAGAAACATGACAAGTCTCCGTAAAGC CAACCCAACAGAAAAGAGCGTTTCAAGGGTTCGAGGCCTACGCTAGTTGC TCTCGCCGTGGTGCAAATGGTATACTGTACTACACTATACTGTAACTATA CTATACTGTACTATACTTGTATGTCGTAACGTCCTCGTGACGCCCTCGTA TTCTTGTTCCTGGCACACTTGTCTTGATTATCTTGATCGTCTTGATTGCG ATTGTCTTGATTGTGTTGATCGAGCAACAAGATTGACAAGGATGCCGCGG TTAGAAACGGTCGAGCGCCCGACTCACGGCATCCTCGAAAAAAAAAAGAA GCGAATCCGATGTATATATGTAGAGCCTATATATATAATACAGTATACGA TGTTTGCTGTCGGTTCTGCGGCCTTAAAAGAGTGGCCTCTTACTGTAGAA TCAGTTGCATTGCTGCCCTTCGCTAGGCCTGTTAATTTTCTCCAACACCT TCCCACGTAAAACACACACACACACTTTCACACCAAACAGGCTGACCTCG TGGACACGCTCAAGAGTTTCCGGAAGGAAAAGGAATACTTGCTGCAGCTG CAGGCACAGCTCCAAGAGGAGAGGCTGATACTCCTGAGGATGGGGAGCAA CACCAGCAAGCGCCTCCTGCCAAACCCCGGTGAGAGCTCCTTGGGCTCTG TTGTACTGGACAAAGGCCGTACAACACGATGGCTGATGGCTTGACAACCC TCATATACATACATATGAGACCCGAAATCCAACAGGAAACCGCGTTCGTG GCGGCTTGGTTGCAAGCCAGGTGTGCCCTGCTTGGTAGCGCCTCGCTCTG TGGGGGTTTGCAAACGTTGATCCTCGTTTGAACTCCAAAGGCGCGCGCGA AGGTCTTGAGAAACGCGGCGCACCAGCGCGCCCGTTTCAGTCTTTTGAGC AAATACGTTGGCGCTCGCGTTTTTTCCTTCCTTCTTTTTTTTCCCCCTTC TTTTCTTTCTTTCCATCTTTCTATCTTTCTCGATCGCTGTACGCTCTTCA GCAATCGCGCGTGATTCGGAGGAGGCCAAACGAGCGCGGGTACCCTCAAG CGTACCTCCGCTACCATTGAAGATGGAGCAGAGCATTGCGCGCAGTTCTT CTTTTGCTGCTGCTGCTGCCGCTTCCACCCCGCACGCCGTGGATGTCCAT GTGTCGCCGAGGAAACGGAGGACCAACGACGATGACGACGAGGAAAGAGA GACACATTCTTCCGGTCCCTTGTGTTCGGGGGAGCCTGGTGAAACTAGAG CCTCTCGGGCCAACCGCACCCGTTCACCATCGGGCGGTGCTTGGGCTATC GAGGTCTAATTGGCCCATCTACCCGATAACAGCCGCGCGATGAGCTGTTG AGACTATGCGCTCAACGCGCAACCGAGGATTGAAGGTGTCCACTTAAATC AGAAGAAATAAGATCGCCGGCGAAGCCACGCGCTTCTGTGGAGGGACTTG TGGTGTGTGTGATCGCATGCATACGTCCTCTTGGGCGCTTGCCACGTCGA CGTAGTCGGGCCGGGGACCGTCTCATCGGCTGACGTTTGCACCTAGCCAG GGGGATAAAATCCGCTCTCACTCCAAAGACCGCCAGCAGGAAGCGGATAC AAGCATCGATGGTGCCACGTGATTCAAGGCGGATCTTGCGGTTTCGTCTC TCCCCCCTTGCTATCAATAGCTATAATATCAATAATGGCTACTTGTTCTT GTATGGTCGCACGTATGGCAACTTCTCGCCGCGCGGGTTAGGATTAGTTA CAGCCGTAGATGGTTTGGACGTCGTCTCGATCGAGGGTTACAATGCGATA TTGTGAGGGGTGCGCTTGGGGTGACTTGGCTTGTCGCTTGAGTGACTGGT GCTCGGACCGGTGGGGGGTGGGAGATGATGGTGTTCTTTGGAGTTACTGT AACCCCAGCTGGTGCAAGATTGCAGCGTTCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig107:543554..551035+

>mRNA_A-nodosum_M_contig107.16.1 ID=mRNA_A-nodosum_M_contig107.16.1|Name=mRNA_A-nodosum_M_contig107.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=879bp|location=Sequence derived from alignment at A-nodosum_M_contig107:543554..551035+ (Ascophyllum nodosum dioecious)
ATGGAGATCCAGACGACTCATGCGGCGGCAGACTTCCGGAAGAGCTGCGA
TTTTTGCACCTCTAGGAAGAGGCGTTGCGACAGAGTTGGCGTTAGCCCTT
GCACGCTGTGCTCGGAGAAAGGAGCGTCTTGCACCTTTCGCCAGAAGGGT
AGGAGGGGGCCTAAACCCAAGGTGCACTACCGGAACCTCTTGGCACCGGC
GGAGGCGGCCTCCGCCTCCGCCGGCGTGGGCAACGGAGACGGCCCAGAGA
AGGGTGTTGGTCCGAACCATCTGGAAGTACCCAAGATTCCGAACACCCGC
CCAGCACCTGACGTGTCGTTGGAGTCGAAAATCGAAATGCTAGAGAGGAG
AAGCGTGGAGGTCGATAAACAGCAGGAGGGGGTGCTAGCTGCGTTGGAAT
CCGGCGGTTCTTTCCGAGGCATCGAGGGCAAGGCTGACCTCGTGGACACG
CTCAAGAGTTTCCGGAAGGAAAAGGAATACTTGCTGCAGCTGCAGGCACA
GCTCCAAGAGGAGAGGCTGATACTCCTGAGGATGGGGAGCAACACCAGCA
AGCGCCTCCTGCCAAACCCCGCAATCGCGCGTGATTCGGAGGAGGCCAAA
CGAGCGCGGGTACCCTCAAGCGTACCTCCGCTACCATTGAAGATGGAGCA
GAGCATTGCGCGCAGTTCTTCTTTTGCTGCTGCTGCTGCCGCTTCCACCC
CGCACGCCGTGGATGTCCATGTGTCGCCGAGGAAACGGAGGACCAACGAC
GATGACGACGAGGAAAGAGAGACACATTCTTCCGGTCCCTTGTGTTCGGG
GGAGCCTGGTGAAACTAGAGCCTCTCGGGCCAACCGCACCCGTTCACCAT
CGGGCGGTGCTTGGGCTATCGAGGTCTAA
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