prot_A-nodosum_M_contig107.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig107.16.1
Unique Nameprot_A-nodosum_M_contig107.16.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length293
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig107.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..261
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 14..52
e-value: 1.0E-6
score: 28.8
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 15..44
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 15..46
score: 9.611
IPR001138Zn(2)-C6 fungal-type DNA-binding domainCDDcd00067GAL4coord: 13..46
e-value: 2.16004E-6
score: 41.8802
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 9..69
e-value: 8.4E-9
score: 37.2
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 10..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig107contigA-nodosum_M_contig107:543631..550412 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig107.16.1mRNA_A-nodosum_M_contig107.16.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig107 543554..551035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig107.16.1 ID=prot_A-nodosum_M_contig107.16.1|Name=mRNA_A-nodosum_M_contig107.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=293bp
MEIQTTHAAADFRKSCDFCTSRKRRCDRVGVSPCTLCSEKGASCTFRQKG
RRGPKPKVHYRNLLAPAEAASASAGVGNGDGPEKGVGPNHLEVPKIPNTR
PAPDVSLESKIEMLERRSVEVDKQQEGVLAALESGGSFRGIEGKADLVDT
LKSFRKEKEYLLQLQAQLQEERLILLRMGSNTSKRLLPNPAIARDSEEAK
RARVPSSVPPLPLKMEQSIARSSSFAAAAAASTPHAVDVHVSPRKRRTND
DDDEERETHSSGPLCSGEPGETRASRANRTRSPSGGAWAIEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf