mRNA_A-nodosum_M_contig1068.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1068.1.1
Unique NamemRNA_A-nodosum_M_contig1068.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.220e-14
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 IDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
             + F A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct:   26 FEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 115
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A5BJG5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Vitis vinifera TaxID=29760 RepID=A5BJG5_VITVI)

HSP 1 Score: 75.9 bits (185), Expect = 4.050e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   22 LGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVK--KTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            L   F +KD G+A Y +G  I R+R    LK  Q +Y+E ++KRF++   K+TK P   G    SKA  P+N DE+EEM+  PY   VG+LM
Sbjct:   52 LSTHFDMKDFGEASYVLGIKILRDRANGVLKLSQRVYIERILKRFNMHNCKSTKAPIVKGD-KFSKAQCPQNDDEREEMKTIPYSSVVGSLM 142
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.570e-14
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct:   91 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 179
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.260e-13
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+  A  L+  Q  Y++SMV+RFDV+ T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct:   27 EELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 115
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.640e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct:  234 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 322
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.780e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct:  487 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 575
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.900e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct:  947 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 1035
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.930e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct: 1326 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 1414
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.940e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct: 1346 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 1434
[Close]
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.940e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 DRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVKRFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM 291
            +   A L +KF  K++G+  ++ GC I R+ +A  L+  Q  Y++SMV+RFDVK T++IPA  G        GP+  DE  E  ++P REA+G++M
Sbjct: 1489 EELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-----GPKREDE--EGGEWPVREAIGSMM 1577
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1068.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPT0_9PHAE1.220e-1440.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BJG5_VITVI4.050e-1443.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS6_9PHAE6.570e-1439.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBH1_9PHAE2.260e-1338.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE3.640e-1339.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE3.780e-1339.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE3.900e-1339.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.930e-1339.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.940e-1339.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.940e-1339.58Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1068contigA-nodosum_M_contig1068:263834..264127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog5217.XP_007000714.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size294
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.76e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VGMM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size294
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866454.7347274-CDS-A-nodosum_M_contig1068:263833..2641271680866454.7347274-CDS-A-nodosum_M_contig1068:263833..264127Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1068 263834..264127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1068.1.1prot_A-nodosum_M_contig1068.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1068 263834..264127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1068.1.1

>prot_A-nodosum_M_contig1068.1.1 ID=prot_A-nodosum_M_contig1068.1.1|Name=mRNA_A-nodosum_M_contig1068.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
IDRFAAELGQKFKLKDMGDAGYYMGCHITRNRKARELKFDQHLYVESMVK
RFDVKKTTKIPAASGGPTVSKADGPRNPDEKEEMRKFPYREAVGALM*
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mRNA from alignment at A-nodosum_M_contig1068:263834..264127-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1068.1.1 ID=mRNA_A-nodosum_M_contig1068.1.1|Name=mRNA_A-nodosum_M_contig1068.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1068:263834..264127- (Ascophyllum nodosum dioecious)
ATAGATAGATTCGCGGCTGAGCTTGGGCAGAAATTTAAATTGAAGGACAT
GGGCGACGCCGGGTACTACATGGGCTGTCACATCACAAGAAACCGCAAGG
CGCGCGAGTTGAAGTTCGACCAACACTTGTACGTGGAGTCAATGGTAAAA
AGGTTTGACGTCAAGAAGACGACTAAGATACCGGCTGCGTCGGGGGGGCC
GACGGTCTCAAAGGCGGATGGACCGCGGAACCCAGATGAGAAGGAGGAAA
TGAGGAAGTTCCCGTACCGGGAGGCAGTGGGGGCGCTCATGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1068:263834..264127-

>mRNA_A-nodosum_M_contig1068.1.1 ID=mRNA_A-nodosum_M_contig1068.1.1|Name=mRNA_A-nodosum_M_contig1068.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1068:263834..264127- (Ascophyllum nodosum dioecious)
ATAGATAGATTCGCGGCTGAGCTTGGGCAGAAATTTAAATTGAAGGACAT
GGGCGACGCCGGGTACTACATGGGCTGTCACATCACAAGAAACCGCAAGG
CGCGCGAGTTGAAGTTCGACCAACACTTGTACGTGGAGTCAATGGTAAAA
AGGTTTGACGTCAAGAAGACGACTAAGATACCGGCTGCGTCGGGGGGGCC
GACGGTCTCAAAGGCGGATGGACCGCGGAACCCAGATGAGAAGGAGGAAA
TGAGGAAGTTCCCGTACCGGGAGGCAGTGGGGGCGCTCATGTGA
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