mRNA_A-nodosum_M_contig1065.35.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: D8LRK4_ECTSI (ER membrane protein complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK4_ECTSI) HSP 1 Score: 190 bits (482), Expect = 9.950e-55 Identity = 94/116 (81.03%), Postives = 107/116 (92.24%), Query Frame = 2
Query: 623 QRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVPL 970
+RAMEIA+GPGKS+LMNGFMMYMSGAGI++ SIMITFMGIMNP KAI+++ FR+VDDGK SLLLPKLI+ A+NF GVCVALWKMAKMGLLPVTAADWTSYL+PK+AIE SGVPL
Sbjct: 54 KRAMEIALGPGKSILMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILSVHSVFRTVDDGKISLLLPKLIFCAVNFGGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 169
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A6H5JF63_9PHAE (ER membrane protein complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF63_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.020e-45 Identity = 92/150 (61.33%), Postives = 105/150 (70.00%), Query Frame = 2
Query: 632 MEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNI----------------------------------PGT---FRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVPL 970
MEIA+GPGK++LMNGFMMYMSGAGI++ SIMITFMGIMNP KAI+ + P T FR+VDDGK SLL+PKL++ ALNF GVCVALWKMAKMGLLPVTAADWTSYL+PK+AIE SGVPL
Sbjct: 1 MEIALGPGKTILMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHNGMPSSTILRTIPAMPTAHAPAQPAMSSPCPRFPQTYAVFRTVDDGKISLLMPKLLFCALNFGGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 150
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A7S2FYU7_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYU7_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.230e-37 Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 2
Query: 629 AMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVPL 970
AM IA GPGK ++MNGFMMYMSG+ IN+ SIMIT MG+ NP+ AIVN+ F VDDG + +PKLI+ ALN + +CVALWK MGLLPVT+ADWTSYL+ K E SG+P+
Sbjct: 60 AMNIATGPGKQIMMNGFMMYMSGSQINIFSIMITAMGLWNPINAIVNVNKAFVKVDDGSHDCTMPKLIFCALNLLSLCVALWKCKAMGLLPVTSADWTSYLIEKTNDEMSGIPI 173
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A7S2DUV1_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DUV1_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.600e-33 Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 2
Query: 620 TQRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVPL 970
T+ AM+IA PGK++LMNGFMMYM+G+ IN+ SIM+ M + NP+ AI I F VDDG L++PKLI+ LN + +CV LWK +MGLLP+T+ADWTSYL+ K + SGVP+
Sbjct: 55 TKMAMDIATAPGKNILMNGFMMYMTGSYINIFSIMMLSMSLWNPLNAIAGINKAFTKVDDGTVDLIMPKLIFFCLNVLSLCVGLWKCGRMGLLPITSADWTSYLLTKVDVSSSGVPI 171
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A7S2SV60_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV60_9STRA) HSP 1 Score: 130 bits (327), Expect = 5.270e-32 Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 2
Query: 608 ACAGTQRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVP 967
A ++ A +A PGK +LMNGFMMYMSG+ IN+ SIMIT MGI P+ AI I FR V+DG L +PKLI+ ALN + + VA+WK MGLLP+TAADWT YL+ K +E +G+P
Sbjct: 58 AALKSKIAFNMATAPGKQILMNGFMMYMSGSQINIFSIMITTMGIWTPINAIAGINKHFRRVEDGNVDLTMPKLIFFALNILSLGVAMWKCKAMGLLPITAADWTGYLVDKEMLEVTGIP 177
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: F0YNL3_AURAN (ER membrane protein complex subunit 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNL3_AURAN) HSP 1 Score: 118 bits (295), Expect = 3.120e-28 Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 2
Query: 623 QRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTF-RSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVPL 970
QRAME+ + PGK++ M GFMM+MSG+ IN+ SIMIT M +NPVK+I+ I TF R D L LPKL + N + +ALWK+ MGLLP+TAADWTS+L+ K +E S VP+
Sbjct: 1 QRAMEMGIAPGKNIFMQGFMMWMSGSSINIFSIMITGMAFINPVKSILAIDDTFKRFAHDPAVDLTLPKLAFVGCNCGMIALALWKLNTMGLLPITAADWTSFLVDKTHVESSSVPI 117
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A5D6XRF1_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRF1_9STRA) HSP 1 Score: 116 bits (290), Expect = 9.110e-27 Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 2
Query: 623 QRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSG 961
+RAMEI M P KSL+ GFMM+MSG+ +N+ SIM+T M IMN K+++N+ G F SV+DG L+ PKL+Y A N V +A++K A MGLLP TAADWT L K AIE S
Sbjct: 63 KRAMEIGMAPFKSLMQTGFMMWMSGSSVNIFSIMVTGMIIMNTFKSLLNLQGAFVSVNDGVVDLVQPKLVYVAGNLANVAMAVYKCANMGLLPTTAADWTWLLPIKQAIETSA 175
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A7R9UC88_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC88_9STRA) HSP 1 Score: 114 bits (285), Expect = 7.030e-26 Identity = 55/117 (47.01%), Postives = 81/117 (69.23%), Query Frame = 2
Query: 614 AGTQRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGV 964
A ++A +I P + +LM GFMMYMSG+ IN+ SIMIT M +NP+ AI N+ TF +DDGK L + KL + A+ +G+ +A+WK MGLLP+T+ADW+ Y++ + A+E +GV
Sbjct: 73 ARVRQAWQITTKPVQQILMQGFMMYMSGSTINIFSIMITSMAFINPLTAIANVNSTFARLDDGKIDLTMQKLAFVAVQILGLLLAMWKCGTMGLLPLTSADWSGYIVIRKALEAAGV 189
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: K3WTT5_GLOUD (ER membrane protein complex subunit 4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTT5_GLOUD) HSP 1 Score: 112 bits (281), Expect = 1.270e-25 Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 2
Query: 623 QRAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDDGKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSG 961
+RAMEI P KSLL GFMM+MSG+ +N+ SIM+T M IMN +K+ NI F SV+DG L+ PKL+Y A N V +AL+K A MGLLP TAADWT L K A+E S
Sbjct: 53 KRAMEIGTAPFKSLLQTGFMMWMSGSSVNIFSIMVTGMIIMNTLKSFFNIQTAFTSVNDGVIDLMQPKLVYIAGNLANVALALYKCAGMGLLPTTAADWTWLLPIKQAVETSA 165
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Match: A0A7S1YWL0_TRICV (ER membrane protein complex subunit 4 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWL0_TRICV) HSP 1 Score: 112 bits (281), Expect = 2.120e-25 Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 2
Query: 626 RAMEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTFRSVDD--GKNSLLLPKLIYSALNFVGVCVALWKMAKMGLLPVTAADWTSYLMPKNAIEYSGVP 967
+AM IA PGK +LMNGFMMYMSG +N+ SI IT M +MNP+ +I+++ TF+ +D GK L +PK+I+ ALN V + V L+KM+ M LLP T+ADW+ ++ K +E S +P
Sbjct: 72 KAMSIATSPGKQILMNGFMMYMSGKTLNIFSISITSMAVMNPIMSILSVNNTFKVFEDPDGKVDLQMPKMIFMALNLVWLFVGLYKMSSMRLLPTTSADWSGTVVWKELMEISSIP 187 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1065.35.1 >prot_A-nodosum_M_contig1065.35.1 ID=prot_A-nodosum_M_contig1065.35.1|Name=mRNA_A-nodosum_M_contig1065.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp MEIAMGPGKSLLMNGFMMYMSGAGINMISIMITFMGIMNPVKAIVNIPGTback to top mRNA from alignment at A-nodosum_M_contig1065:180887..182621- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1065.35.1 ID=mRNA_A-nodosum_M_contig1065.35.1|Name=mRNA_A-nodosum_M_contig1065.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1735bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:180887..182621- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:180887..182621- >mRNA_A-nodosum_M_contig1065.35.1 ID=mRNA_A-nodosum_M_contig1065.35.1|Name=mRNA_A-nodosum_M_contig1065.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:180887..182621- (Ascophyllum nodosum dioecious)back to top |