mRNA_A-nodosum_M_contig1063.7.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 160 bits (406), Expect = 6.150e-42 Identity = 84/203 (41.38%), Postives = 111/203 (54.68%), Query Frame = 1
Query: 61 KIGNLMCDSENSNEACAYDGGDCCPCTKYLSWSDDFVQEVWDMFCRDPSSGCLDP---RVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCTRASNESSFSL-------------CVDPGAACYNPTAVTVQSTCINGRINYIGDGWCDADNNNKGCLYDGGDCCMCTCTNGQFVYCGSF-GFSCVDPDVITKDAN 618
+ G+ CD EN+NE C YDGGDCC CT +W DD+ + C DPS+ C+D VDM NC G + +G+ WCD NNNE C +DGGDCC CT ++ C+DP A C N +T+ N +G+G+CD DNNN+ C YDGGDCC CTC + CG + GF+C+DP+ D +
Sbjct: 60 EFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAA-NSACIDPSAPCVDDDDVTVDMVENC--GYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIV-ENCDSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPCVDED 258
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 145 bits (365), Expect = 1.580e-34 Identity = 82/214 (38.32%), Postives = 112/214 (52.34%), Query Frame = 1
Query: 7 CLSGAAAKYENCAKGDKDKIGNLMCDSENSNEACAYDGGDCCPCTKYLSWSDDFVQEVW-----DMFCRDPSSGCL---DPRVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCT-----RASNESSFSLCVDPGAACYNPTAVTVQSTCINGRINYIGDGWCDADNNNKGCLYDGGDCCMCTCT---NGQFVYCGSFG-FSCVDPD 597
C + E + D +G+ CD N+NE C YDGGDCC CT + DD+ +++ C DPS+ C+ D VD+ +C +GD +CD NNN C +DGGDCC CT + S F+ C+DPGA C + +VTV + +G+GWCD +NNN+ C YDGGDCC CTC N + G F+C DP+
Sbjct: 90 CYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESCD---AVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCGGRSGFA-CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPN 299
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 141 bits (356), Expect = 3.900e-33 Identity = 84/207 (40.58%), Postives = 108/207 (52.17%), Query Frame = 1
Query: 34 ENCAKGDKDKIGNLMCDSENSNEACAYDGGDCCPCTKYLSWSDDFVQEVWDMFCRDPSSGCLDP---RVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCTRASNESSFS------------LCVDPGAACYNPTAVTVQSTCINGRINYIGDGWCDADNNNKGCLYDGGDCCMCTCTN---GQFVYCGSFG-FSCVDPD 597
ENC+ IG+ C + CAYDGGDCC CT + DD+ +W C DP + C+D VDM+ NC V DIG+ WCD ANN E C +DGGDCC CT ES + C+DP A C + +TV G ++ IG+GWCD +NN + C YDGGDCC CTC + + +G F C DP+
Sbjct: 123 ENCSWSTG--IGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGC-MW-FACIDPEAACVDDDDITVDMFENCEYPV--DIGNGWCDEANNIEACGYDGGDCCECT-CEYESPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPN 322
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.010e-32 Identity = 94/302 (31.13%), Postives = 131/302 (43.38%), Query Frame = 1
Query: 34 ENCAKGDKDKIGNLMCDSENSNEACAYDGGDCCPCTKYLSWSDD--FVQEVWDMF-CRDPSSGCLDP---RVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCTRASNESSFS-------------------------LCVDPGAACYNPTAVTVQSTCINGRINY--------------------------------IGDGWCDADNNNKGCLYDGGDCCMCTCTNGQFVYCGSFGFSCVDPDVI-TKDANLCVELASPIPAC--PVELQSEWV-----VETHDPGSSTGESCS 726
+NC D +GN CD +N+NE C YD GDCC CT W DD + F C DP++ C+D +DM NC G + +GD WCD NNNE C +DGGDCC CT + ++ C+DP AAC N +TV + + + +GDG+C+ NNN+ C YDGGDCC CTC N F+C+DP+ D ++ V++ C PV++ + W+ + H G G+ CS
Sbjct: 95 QNCVTSD---LGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC--GYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGGFACIDPNAACVNDDDITVGMDTPSNKCGWRXXXXXXXXXXXXXXXXXXXXDMIENCEYPWGVGDGYCNQQNNNELCAYDGGDCCSCTCQNDFDDDWACTTFACIDPEAACVNDDDITVDM---FVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCS 388
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 141 bits (356), Expect = 1.970e-32 Identity = 85/206 (41.26%), Postives = 112/206 (54.37%), Query Frame = 1
Query: 52 DKDKIGNLMCDSENSNEACAYDGGDCCPCTKYLSWSDDFVQEVWDMF-CRDPSSGCLDP---RVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCTRASNE-------SSFSLCVDPGAACYNPTAVTVQSTCINGRINYIGDGWCDADNNNKGCLYDGGDCCMCTCTNGQFVYCGSFGFSCVDPDVI-TKDANLCVEL 633
D IG+ C+ +N+NEACAYDGGDCC CT + ++ + W F C DP++ C+D VDM NC IG+ WCD NNNE C +DGGDCC CT S E ++F+ CVDP A C + +VT+ IGDG+C D N C YDGGDCC CTC N F+C+DP+ D ++ V++
Sbjct: 215 DTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGR--WSSFACIDPAAPCVDDDSFTVDMIDNCE--YPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLEDDDWACRNNFA-CVDPNAPCVDDDSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQNDVDDDWXXXXFACIDPEAACVNDDDITVDM 415
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.010e-30 Identity = 80/218 (36.70%), Postives = 109/218 (50.00%), Query Frame = 1
Query: 73 LMCDSENSNEAC----AYDGGDCCPCTKYLSWSDD----FVQEVWDMFCRDPSSGCLDP---RVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCTRASNES--------SFSLCVDPGAACYNPTAVTVQSTCINGRINYIGDGWCDADNNNKGCLYDGGDCCMCTCT-----------NGQFVYCGSFGFSCVDPDV-ITKDANLCVEL 633
++C +S C YDGGDCC CT W DD ++ C DP + C+D V++ NC + GD WCD NNNE C +DGGDCC CT S +++ C+DP A C + +T G + +GDGWCD DNNN+ C YDGGDCC CTC + + CGS GF+C+DP+ D ++ V++
Sbjct: 4 IVCPLPHSVVVCPCLPGYDGGDCCECTCVNPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQNCDTWGL---GDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGS-GFACIDPNAPCVNDDDITVDV 217
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 123 bits (309), Expect = 3.690e-26 Identity = 98/307 (31.92%), Postives = 128/307 (41.69%), Query Frame = 1
Query: 1 VLC--LSGAAAKYENCAKGDKDKIGNLMCDSENSNEACAYDGGDCCPCT---------------------------------------------KYLS----WSD--------DFVQEVWDMFCRDPSSGCLDPRVDMY-PNCTNGVIPDIGDEWCDAANNNERCLFDGGDCC------------GCTRASNESSFSLCVDPGAACYNPTAVTVQSTCINGRINYIGDGWCDADNNNKGCLYDGGDCCMCTCTNGQFVYCGSFGFSCVDPDVITKDANLCVELASPIPA---CPVELQSEWVVETHD 696
+LC L G AA+Y+ C G IGN CD+E + +C YDGGDCC CT Y WSD D+ + + C D S CL V P+C + IGDE+CD+ NNN C +DGGDCC G ++ S F C+DP A ++PT V C G + IGDG C +NNN C YDGGDCC+C+C+ CG C+DP + E + P P C E+Q WVV+ +
Sbjct: 16 LLCPLLHGGAAQYDTCTNGAIADIGNGRCDAELNVPSCGYDGGDCCSCTCVDGPLYWCSEGTFDCLYPDCGDNPASDLEFFETQDNTTKCNMFQNYPECNTLWSDCCEMDCGGDYYCDTYRFDCSD--STCLSQTVVAENPDCAGDWLT-IGDEFCDSENNNPECAYDGGDCCADTCPLSIDSACGFDGFADYSGFD-CLDP--AFFDPTVVAEFPECT-GSWSMIGDGQCQEENNNPACGYDGGDCCICSCSG---TLCGGLA-DCLDPSA----GDEFYECSPPSPEALPCSAEVQQTWVVDEQE 307
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 111 bits (277), Expect = 4.030e-22 Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 2
Query: 692 TIQAQALAKAVRCSGGSFHVTWKGKVILDETISIFNGTFVNVTSADADSAIIGDGNSRLFAVVNASLHLCNITLSNGSTTYGGAIAASRSRLTFEGVAFTGNVASSSGGAIFLSRKTYASFVG-----------------------EILNMTFTGNVATXXXXGALFVEGESYVSWTGNSIFSVN--SCWG 1189
+ QAQALA AV CSGGSF V W+G V+++ + +GT +++T + +AI G+ +RLF VVNA+LHL + +++G++T GGAIAA+ + LT F N A+ +GGAI+LS + G ++ GNVA GA+ V+GES +SW+ ++IF N WG
Sbjct: 157 SAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMVCSGGGSFTXXXXXXXXXXXXXXXXXXXXXXXSWFGNVA-GDSAGAIIVDGESSLSWSEDAIFGFNLAETWG 346
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 109 bits (273), Expect = 5.630e-22 Identity = 60/141 (42.55%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 31 YENCAKGDKDKIGNLMCDSENSNEACAYDGGDCCPCT-KYLS---WSDDFVQEVWDMFCRDPSSGCL---DPRVDMYPNCTNGVIPDIGDEWCDAANNNERCLFDGGDCCGCT---------RASNESSFSLCVDPGAACY 405
+ENC +G+ CD N+NEAC YDGGDCC CT +Y S W DD+ + C DP++ C+ D VDM+ NC G + IG+ WCD NN E C +DGGDCC CT S+E C DP A+C+
Sbjct: 90 FENCDYALS--VGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENC--GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCF 226
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Match: A0A6H5KRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU8_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 3.690e-19 Identity = 61/168 (36.31%), Postives = 91/168 (54.17%), Query Frame = 2
Query: 710 LAKAVRCSGGSFHVTWKGKVILDETISIFNGTFVNVTSADADSAIIGDGNSRLFAVVNASLHLCNITLSNGSTTYGGAIAASRSRLTFEGVAFTGNVAS---SSGGAIFLSRKTYASFVGEILNMTFTGNVA---------TXXXXGALFVEGESYVSWTGNSIFSVN 1177
LA AV CSGGSF V WKG + + E I +GT + ++ + + I G+G++RLF VVN SLH ++ +S+G++ GGA+AA+ S L F G F GN +S GG +F + A+ GE L T T V+ G + + S +SW ++F+ N
Sbjct: 19 LAAAVNCSGGSFEVDWKGTIAVGELFDIVDGTAITMSGEGSTAVIDGNGSTRLFIVVNTSLHFNHVNISSGASGVGGAVAAAGSSLAFNGTNFVGNKSSYVSCVGGGVFADNR--AAMHGEALFATGTSEVSCGGSWLNNTAGNSGGVVRIHQVSAMSWKDEAVFAYN 184 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1063.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1063.7.1 >prot_A-nodosum_M_contig1063.7.1 ID=prot_A-nodosum_M_contig1063.7.1|Name=mRNA_A-nodosum_M_contig1063.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=246bp MCDSENSNEACAYDGGDCCPCTKYLSWSDDFVQEVWDMFCRDPSSGCLDPback to top mRNA from alignment at A-nodosum_M_contig1063:232962..234406+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1063.7.1 ID=mRNA_A-nodosum_M_contig1063.7.1|Name=mRNA_A-nodosum_M_contig1063.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1445bp|location=Sequence derived from alignment at A-nodosum_M_contig1063:232962..234406+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1063:232962..234406+ >mRNA_A-nodosum_M_contig1063.7.1 ID=mRNA_A-nodosum_M_contig1063.7.1|Name=mRNA_A-nodosum_M_contig1063.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at A-nodosum_M_contig1063:232962..234406+ (Ascophyllum nodosum dioecious)back to top |