mRNA_A-nodosum_M_contig1062.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1062.14.1
Unique NamemRNA_A-nodosum_M_contig1062.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.170e-77
Identity = 125/202 (61.88%), Postives = 158/202 (78.22%), Query Frame = 1
Query:  601 NTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEGTR 1206
            N  ERK PHCM+RL+G+L +D +RPL+I++RLQATR +LD SAVG R  +W+   +RFRD  H VR+IVD   V++ NPNII QPNISA K+ KMW+AAKAKWNTP  NWK ESGNNQPW+SFCQGDTD++++G A+ KYPEL+QVC++L P+DAQREDDGTG   G T GA++R  AKR+  RLY  +R G K+ KK+G R
Sbjct:   36 NITERKGPHCMMRLVGMLCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHNVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPIANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKQGRR 236          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 1.550e-74
Identity = 150/333 (45.05%), Postives = 197/333 (59.16%), Query Frame = 1
Query:  280 SPTCVELDPRKAGRKKYRGDAVPEG--------AVLALLNALLLVDV*RDPVKTFRYEHKEYKLSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGRGV------------------NTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEG 1200
            SP   +LD   AG K  RG    EG        A+L     + +V + RD  + F  E  +Y ++D++ A++KE+                             PE  D+AG                     +  ERK PHCM+RL+GIL +D +RPL+I++RLQATR +LD SAVG R  +W+   +RFRD  H VR+IVD   V++ NPNII QPNISA K+ KMW+AAKAKWNTP+ NWK ESGNNQPW+SFCQGDTD++++G A+ KYPEL+QVC++  P DAQREDDGTG   G T GA++R  AKR+  RL   +R G K+ KK G
Sbjct:   90 SPYFDDLDAIVAG-KSGRGSEQEEGEEGVIPAKALLMFRGVINMVALARDRTEPFTVEGVDYSVADLYDAMEKENT----------------------------PELEDSAGGXXXXXXXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG 393          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 4.650e-74
Identity = 148/334 (44.31%), Postives = 198/334 (59.28%), Query Frame = 1
Query:  280 SPTCVELDPRKAGR-----KKYRGD---AVPEGAVLALLNALLLVDV*RDPVKTFRYEHKEYK-LSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGRGV------------------NTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEG 1200
            SP   +LD   AG      ++  G+   A+P  A+L     + +V + RD  + F  E  +Y  ++D++ A++KED                             PE  D+AG                     N  ERK PHCM+RL+G+L +D +RPL+I++RLQATR +LD SAVG R  +W+   +RFRD  H VR  VD   V++ NPNII QPNISA K+ KMW+AAKAKWNTP+ NWK ESGNNQPW+SFCQGDTD++++G A+ KYPEL+QVC++L P+DAQREDDGTG   G T GA++   AKR+  RLY  +R G  + KK G
Sbjct:   94 SPYFDDLDAIAAGESGRGSEQEEGEEEGAIPASALLMFRGVVNMVALARDSTEPFTVEGVDYSSVADLYDAMEKEDK----------------------------PELEDSAGXXXXXXXXXXXXXXXXXXXSGNITERKGPHCMMRLVGMLCEDSIRPLVINSRLQATRQELDNSAVGPRKHLWTEVTDRFRDPRHNVRISVDDELVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKRESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGDGNGCTGGAERLAAAKREGARLYEQNRRGTMQKKKGG 399          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.990e-73
Identity = 149/311 (47.91%), Postives = 195/311 (62.70%), Query Frame = 1
Query:  307 RKAGRKKYRGDAVPEGAVLALLNALLLVDV*RDPVKTFRYEHKEYKLSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGR----GVNTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEGTRARHGGHY 1227
            R+ G +     A+P  A+L   N + +V + RD    F+ ++ EY ++D++ A+ KED        E G G+S                           G NT ERK PHCM+RL+GIL +D +RPLLI++RLQATR  LD S+VG R  +W+    RFRD  H+VR+IVD   V++ +PNII QPNISA KL +MWA AKAKWN P+ NWK ESGNNQPW+SFCQG TD++V+G A+ KYPELNQVC++L P+ AQREDD TG     T GAD+R  AKR+  RL+  +R GKK  KK+G  A+ G  Y
Sbjct:  203 RRNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSNVPFQVDNVEYSVADLYDALAKED--------EAGKGNSXXXXXXXXXXXXXXXXXXXXXXXXXXSGSNT-ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDWTGEGIVGTGGADRRAAAKREGARLHEQNRRGKK-AKKQGGGAKRGRGY 503          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 9.000e-73
Identity = 141/296 (47.64%), Postives = 186/296 (62.84%), Query Frame = 1
Query:  307 RKAGRKKYRGDAVPEGAVLALLNALLLVDV*RDPVKTFRYEHKEYKLSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGRGVNTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKK 1194
            R+ G +     A+P  A+L   N + +V + RD    F+ ++ EY ++D++ A+ KED      G                               G NT ERK PHCM+RL+GIL +D +RPLLI++RLQATR  LD S+VG R  +W+    RFRD  H+VR+IVD   V++ +PNII QPNISA KL +MWA AKAKWN P+ +WK ESGNNQPW+SFCQG TD++V+G A+ KYPELNQVC++L P+ AQREDDGTG     T GAD+R  AKR+  RL+  +R GKK+  K
Sbjct:   80 RRNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSNVPFQVDNVEYSVADLYDALAKEDE----AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSNT-ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYADWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVGTGGADRRAAAKREGARLHEQNRRGKKQKNK 370          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 3.040e-72
Identity = 149/333 (44.74%), Postives = 196/333 (58.86%), Query Frame = 1
Query:  280 SPTCVELDPRKAGRKKYRGDAVPEG--------AVLALLNALLLVDV*RDPVKTFRYEHKEYKLSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGRGV------------------NTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEG 1200
            SP   +LD   AG K  RG    EG        A+L     + +V + RD  + F  E  +Y ++D++ A++KE+                             PE  D+AG                     +  ERK PHCM+RL+GIL +D +RPL+I++RLQATR +LD SAVG R  +W+   +RFRD  H VR+IVD   V++ NPNII QPNISA K+ KMW+AAKAKWNTP+ NWK ESGNNQPW+SF QGDTD++++G A+ KYPEL+QVC++  P DAQREDDGTG   G T GA++R  AKR+  RL   +R G K+ KK G
Sbjct:  252 SPYFDDLDAIAAG-KSGRGSEQEEGEEGVIPAKALLMFRGVINMVALARDRTEPFTVEGMDYSVTDLYDAMEKENT----------------------------PELEDSAGGXXXXXXXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFAQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG 555          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 3.480e-69
Identity = 142/308 (46.10%), Postives = 182/308 (59.09%), Query Frame = 1
Query:  307 RKAGRKKYRGDAVPEGAVLALLNALLLVDV*RDPVKTFRYEHKEYKLSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGR----------------GVNTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKK 1182
            R  G +     A+P  A+L   N + +V + RD    F+ ++ EY   D++ A+ KED                     +G G                             G NT ERK PHCM+RL+GIL +D +RPLLI++RLQATR  LD S+VG R  +W+    RFRD  H+VR+IVD   V++ +PNII QPNISA KL +MWA AKAKWN P+ NWK ESGNNQPW+SFCQG TD++V+G A+ KYPELNQVC++L P+ AQREDDGTG     T GAD+R  AKR+  RL   +R GKK
Sbjct:  315 RSNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSKVPFKVDNVEYSAVDLYDALAKEDE--------------------AGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSNT-ERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNDLWTEVTTRFRDPDHQVRKIVDDQQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGKK 601          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.950e-66
Identity = 121/200 (60.50%), Postives = 153/200 (76.50%), Query Frame = 1
Query:  610 ERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWK-GESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEGTR 1206
            ERK PHCM+RL GIL +D +RP +I++RLQATR +LD SAVG R  +W+   +RFRD  H VR+IVD    ++ NPNII QP+I A K+ K W+AAKAKWNTP+ NWK  ESGNNQPW+SFCQGDTD++++G A+ KYPEL+QVC++L P+DAQREDDGTG   G T GA++R  AKR+  RLY  +R G K+ KKEG R
Sbjct:  733 ERKGPHCMMRLEGILCEDSIRPRVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHNVRKIVDDEQASHVNPNIIQQPDIFAEKITKTWSAAKAKWNTPNANWKKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKEGGR 931          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.250e-61
Identity = 103/163 (63.19%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  601 NTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTG 1089
            N  ERK PHCM+RL+GIL +D +RPL+I++RLQATR +LD SAVG R  +W    +RFRD  H VR+IVD   V++   NII QPNISA K+  M +AAKAKWNTP+ NWK E GNNQPW+SFCQGDTD++++G AV KYPEL+QVC++L P+DAQREDD TG
Sbjct:   70 NITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKNLWPEVTDRFRDPRHNVRKIVDDEQVSHVIANIIQQPNISAEKITPMRSAAKAKWNTPNANWKSEPGNNQPWLSFCQGDTDTYILGCAVEKYPELDQVCNNLLPEDAQREDDRTG 232          
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.820e-61
Identity = 131/315 (41.59%), Postives = 184/315 (58.41%), Query Frame = 1
Query:  277 ASPTCVELDPRKAGR-------KKYRGD---AVPEGAVLALLNALLLVDV*RDPVKTFRYEHKEYKLSDIFAAIDKEDAQKRSTGEERGGGSSAAGAEGSGVGRASGPEGGDAAGRGV------------NTCERKSPHCMIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRDETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNWKGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDDGTGAVGGVTSGADQRVVAKRKSERL 1155
            +SP   +LD   AG+       ++  G+   A+P  A+      + +V   RD  + F +E  +Y ++++F A++++   K   G+  GG               S P GG +                 +  ERK PH M+RL+GI  +D + PL I++R+QATR +LD SAV  R  +W+   +RFRD  H VR+IVD   V++ NPNII QPN SA K+   W+AA+A WNTP+ NW  ESGNNQPWVSF QGDTD++++G A  KYPEL+QVC++L P+DAQREDDGTG     T GA++R  AKR+  RL
Sbjct:  219 SSPYFDDLDAIAAGKSGCGRGSEQEEGEEEAAIPAKAMPTFRGVVNMVAQARDSTEPFIFEDVDYSVANLFDAMEED---KPELGDSAGG---------------SAPNGGSSXXXXXXXXXXXXXXXSGSITERKGPHWMMRLVGIPCEDSIHPLAINSRMQATRQELDTSAVWPRNNLWTEVTDRFRDRGHNVRKIVDDGQVSHVNPNIIQQPNRSAEKITNTWSAARANWNTPYANWTSESGNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTGEGDACTGGAERRTAAKREGARL 515          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1062.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXZ6_9PHAE1.170e-7761.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX9_9PHAE1.550e-7445.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNY9_9PHAE4.650e-7444.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU69_ECTSI1.990e-7347.91Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FJ39_ECTSI9.000e-7347.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFU0_9PHAE3.040e-7244.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE3.480e-6946.10Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KNM0_9PHAE1.950e-6660.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ52_9PHAE1.250e-6163.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSN7_9PHAE2.820e-6141.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1062contigA-nodosum_M_contig1062:194128..197597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU69
Model size2694
Max annot lvl2880.D7FU69|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.08e-72
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size732
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1062.14.1prot_A-nodosum_M_contig1062.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1062 195517..196967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866449.0756354-UTR-A-nodosum_M_contig1062:194127..1954581680866449.0756354-UTR-A-nodosum_M_contig1062:194127..195458Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1062 194128..195458 -
1680866449.084761-UTR-A-nodosum_M_contig1062:195515..1955161680866449.084761-UTR-A-nodosum_M_contig1062:195515..195516Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1062 195516..195516 -
1680866449.1247652-UTR-A-nodosum_M_contig1062:196967..1975971680866449.1247652-UTR-A-nodosum_M_contig1062:196967..197597Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1062 196968..197597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866449.0936394-CDS-A-nodosum_M_contig1062:195516..1959021680866449.0936394-CDS-A-nodosum_M_contig1062:195516..195902Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1062 195517..195902 -
1680866449.1047118-CDS-A-nodosum_M_contig1062:196229..1964131680866449.1047118-CDS-A-nodosum_M_contig1062:196229..196413Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1062 196230..196413 -
1680866449.1150498-CDS-A-nodosum_M_contig1062:196805..1969671680866449.1150498-CDS-A-nodosum_M_contig1062:196805..196967Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1062 196806..196967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1062.14.1

>prot_A-nodosum_M_contig1062.14.1 ID=prot_A-nodosum_M_contig1062.14.1|Name=mRNA_A-nodosum_M_contig1062.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=244bp
MIRLIGILVKDDVRPLLIDTRLQATRGQLDVSAVGSRGVVWSLAAERFRD
ETHEVRRIVDHPFVANCNPNIIHQPNISANKLYKMWAAAKAKWNTPHTNW
KGESGNNQPWVSFCQGDTDSFVIGKAVRKYPELNQVCSDLPPDDAQREDD
GTGAVGGVTSGADQRVVAKRKSERLYNLSRMGKKKGKKEGTRARHGGHYA
ESRENLRCRTNTAISKRQPGGVEVAPENGGSGEQVRCHSPRQV*
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mRNA from alignment at A-nodosum_M_contig1062:194128..197597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1062.14.1 ID=mRNA_A-nodosum_M_contig1062.14.1|Name=mRNA_A-nodosum_M_contig1062.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3470bp|location=Sequence derived from alignment at A-nodosum_M_contig1062:194128..197597- (Ascophyllum nodosum dioecious)
CCATCATGCGAGCAGAGATCTAACGCATCCTTACCGTCACACCCCTCAGG AGAGTGGTAGCAATAATTCCTTGCCATCAGAGGTATCTCACGCACCCGTC CCCCCCTTTCCCCCGGATAGCTGGCCTCCAGTGACATGCACTTAAATCAC ACTGATGACATTGGATACCAAACCCCCTACAGAATACCACTCCGTGTGAC GTTGTTTTTTCATATAAACGCTCAAGTAGCAGTATCTTTTGAAACGTACG GTAACCATGTTCACCCTGTATTTCTCGCATCTCCGACGTGTGTTGAACTT GATCCACGCAAAGCTGGACGCAAGAAATATAGGGGCGATGCCGTTCCCGA GGGGGCGGTTCTCGCGCTTCTAAATGCGCTGCTTCTTGTCGACGTTTAGC GCGACCCTGTCAAGACCTTTCGGTATGAGCACAAGGAGTATAAGCTCTCC GACATTTTTGCTGCCATCGACAAGGAAGACGCTCAAAAGAGGAGTACCGG TGAAGAGAGGGGTGGAGGCTCTTCCGCCGCTGGTGCAGAAGGATCGGGTG TTGGGCGTGCATCCGGACCGGAAGGAGGCGATGCAGCCGGGAGGGGAGTT AATACTTGTGAGCGCAAGAGCCCGCACTGTATGATACGGCTTATTGGGAT CCTGGTTAAGGATGATGTCCGCCCATTGCTCATCGACACCCGGCTACAGG CGACACGAGGACAGCTGGACGTCTCGGCGGTGGGGTCTAGAGGCGTGGTG TGGTCACTCGCCGCCGAACGCTTTCGAGACGAAACGCATGAGGTAAGCGG CGGGGAATACCGATAGTTTTCTATCAGATAGTGATCGAAATCTATCAACT ACAATAGTACGAGGTACAGTCATTGTCGCTTTCCAGTTGTCTGTCGTTAT CACTTTCATGATGCAATCCTGGTTCACGCTAAACGCCCAGGACATCGTCC CCGGCGATTGCTTACGCGTTTTTTTCTAGCTGGACCCTGAAAATTTTCCA CGCGTGTGCTATGAGCCATTACGAAACTTTCGAAGAGCTTTTATTTTTTT GTGTATTTCGCCCAGTATCCTCGGTCCCACGGTCATTAGGGTCACATGGT CCTCTAGATATCAAGACTATATCCCAGCAATCCCCAACAACACTTATCTG CTCTCTGCAATACCAATCGTCGTGTTTGTCTCAGGTGAGGCGCATCGTCG ATCATCCGTTCGTGGCCAACTGCAACCCAAACATCATCCACCAACCGAAT ATCTCAGCTAATAAGCTTTACAAAATGTGGGCCGCAGCGAAGGCGAAGTG GAACACGCCGCATACAAACTGGAAGGGTGAATCCGGCAACAACCAGCCAT GGGTCTCGTTTTGTCAAGGTGAGGAAGAGAAACGTGTACGGGAATTAGAT GTCACGGGTCACCTCTGGGCTTCCAGGTATGTCTTGCTAGCGGTAGCGGA AGCAGTTGTCTGCTCACGCAGCGGCTGTAGACGTGACAGTGCAGTGATGG CGAGAGTTTTGGTGGTGAGTCTTTACCAGTTTTAGCATTCTGTTTTCTAA GCGTTCATCGTAAATAGACAGCTCCAATGATTCAAACTGACGAGCGGCAG AAATAATCCGTAGCCTTCACCAACGACTTGCGGCGAACAATGAATCATGC CATGCACAACAACTTTGTATCCCCTTCCCCTTGCTGCTCAATCAGGAGAC ACCGACTCCTTCGTCATCGGCAAGGCCGTCCGAAAGTATCCGGAGCTCAA CCAGGTGTGCAGCGACCTCCCCCCGGATGATGCTCAAAGAGAGGATGATG GGACCGGTGCGGTAGGTGGGGTGACGAGCGGCGCCGACCAAAGGGTGGTC GCCAAGCGCAAGAGCGAGAGGCTCTACAATTTGAGCCGAATGGGTAAAAA AAAGGGCAAGAAAGAAGGAACGAGAGCAAGACATGGCGGTCATTATGCAG AAAGCCGTGAAAACCTCCGTTGCCGAACTAACACCGCTATTTCCAAACGT CAACCCGGAGGAGTCGAAGTGGCGCCAGAAAACGGAGGAAGCGGAGAGCA AGTCCGCTGCCATAGCCCTCGCCAGGTATAATGTTGCAGCACACTCAGAC TTCGAGAAGAAGCTCGAGGAGGAGGGAAAACGTAGGGAGAGGGGGAACGC CAAAAGAAAGGCGTTTCTGAAAAAAAATTTAGCAGCCCTCGAGCAGGTCA TGGATGAAGATTAGACACGTGCGCTCCGAGTGATATTATTTGTGAAGTTG CCTGAAACAACTAGAGTTGTATTTGGCGAAGAAACGGCTGTTAGAGATGG TTGGAAAAAGCGTGTGGTTATTTTTTGTTTCTTTTTGGTGTATCAAAGTT GTCGTGGTTAGCCATAACGTCGTTAATCGCAGGCCTGGTGGTGCTGGGCT TTTTAGCGGGGAGGTTGGTTTGAAAATGTCGCCTTGGCGACGGTTTGTAA TGCAGGGCGGCTCATGAGGGGGAAGGGGAACTGGAGGTCTCGTCGGAGTA TGAAACCGGTCGCCTTTCCTTTTTGTTTTTGAGACAGGTGGGGCGTTTCT TGCTTTAGGCTATATATACCTGGTACGAGGAAAGAAATATAATACCCTAG GAACTTCTATATTAGGAAACAAGTATTCTCCGTACTAAAAGACTACACTG AAGAAAGGAAACACTGTGTTACGAGAGTCCATTTTGCTATTACATCAGAA GTAAGGTGCAATCTGGCTTTCTTGAAAAAGGGAAGTACGTATATATGTGC GAAATATCCCTTTCTAATACTACTGCTGCCTTCTCAAGCTGTTGTACTCA GAAGGGGGTCAGGGTCAACCGAAGATTTGATATACATCATGTTGTTCGGG TTCATGAAATGGAGAACAACGAAGGATAATTATGGAGGGCAAAATCTGAT CGGATGTGTCAACAGCGTATATACTGATGCGCGAGACCCAAGATGTATCA TCATTCTGGATCATTGCCTACCGCTTTGGAATGTGATATTGTGGGAGACG TAAGGCAGTAACTGTAGCCAGTGGTCTACTACAAGCTTGCTGTTTTGGTT GAATACTATAGGACAAGCAAAACGCTTCAAGTCACTGAATAGGTTAACAT GGCCAACAGGTATATTGCTGTGAAAAAGTTGAACTGAGTGGCGTGGTTGA TACAGCAGTTCTGTTGAGTCGTTCTGCAAACCACTTGGCTGGTAGAACAG TTAATGAAATAAGCTGTTCTTCTATTATTTGGAAATCGCCTATTTTTGCC CTTAGGTATCACTGTTCTAGGTAGACAAATGACTTTTGCCCTTAGGTCTA TCGTCACGAATTGTTCTAGGGCATCGCTTATTGCTTGCAGCAATCGATGA GAGAAGCTGTTGTGTTGAAAATTGTGGGAATCACTCAATGCAACAGGTGA ATTGAGTGTTTGTATCGTCATGATGAGATACTGCTACTGCAGCATCTGTA GTGTAGCGGAATACAAGAGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1062:194128..197597-

>mRNA_A-nodosum_M_contig1062.14.1 ID=mRNA_A-nodosum_M_contig1062.14.1|Name=mRNA_A-nodosum_M_contig1062.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at A-nodosum_M_contig1062:194128..197597- (Ascophyllum nodosum dioecious)
ATGATACGGCTTATTGGGATCCTGGTTAAGGATGATGTCCGCCCATTGCT
CATCGACACCCGGCTACAGGCGACACGAGGACAGCTGGACGTCTCGGCGG
TGGGGTCTAGAGGCGTGGTGTGGTCACTCGCCGCCGAACGCTTTCGAGAC
GAAACGCATGAGGTGAGGCGCATCGTCGATCATCCGTTCGTGGCCAACTG
CAACCCAAACATCATCCACCAACCGAATATCTCAGCTAATAAGCTTTACA
AAATGTGGGCCGCAGCGAAGGCGAAGTGGAACACGCCGCATACAAACTGG
AAGGGTGAATCCGGCAACAACCAGCCATGGGTCTCGTTTTGTCAAGGAGA
CACCGACTCCTTCGTCATCGGCAAGGCCGTCCGAAAGTATCCGGAGCTCA
ACCAGGTGTGCAGCGACCTCCCCCCGGATGATGCTCAAAGAGAGGATGAT
GGGACCGGTGCGGTAGGTGGGGTGACGAGCGGCGCCGACCAAAGGGTGGT
CGCCAAGCGCAAGAGCGAGAGGCTCTACAATTTGAGCCGAATGGGTAAAA
AAAAGGGCAAGAAAGAAGGAACGAGAGCAAGACATGGCGGTCATTATGCA
GAAAGCCGTGAAAACCTCCGTTGCCGAACTAACACCGCTATTTCCAAACG
TCAACCCGGAGGAGTCGAAGTGGCGCCAGAAAACGGAGGAAGCGGAGAGC
AAGTCCGCTGCCATAGCCCTCGCCAGGTATAA
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