mRNA_A-nodosum_M_contig106.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig106.5.1
Unique NamemRNA_A-nodosum_M_contig106.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: M1DBW2_SOLTU (30S ribosomal protein S12, chloroplastic n=3 Tax=Pentapetalae TaxID=1437201 RepID=M1DBW2_SOLTU)

HSP 1 Score: 224 bits (570), Expect = 5.100e-68
Identity = 142/266 (53.38%), Postives = 169/266 (63.53%), Query Frame = 1
Query:    1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCS--------------PFIATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVA 738
            + S H VTG VYK RE IHR +A++RLLA P+S  RVAA NPNL +   L +     +F  A  S                +AT +HGSI T  SIHRL+LGLLGY+IPF+ LAF S       +V SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D+T DL +HLQTLY Q FRITLASSVLPRL   + Q T       K +   W F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A
Sbjct:    1 MASSHSVTGGVYKARERIHRQMANRRLLAIPASCRRVAACNPNLGRF--LGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRL---LAQNTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIA 261          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: Q5W7C9_ORYSJ (Unknow protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q5W7C9_ORYSJ)

HSP 1 Score: 202 bits (513), Expect = 1.390e-60
Identity = 123/220 (55.91%), Postives = 147/220 (66.82%), Query Frame = 1
Query:  202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
            +AT +HGS  TT SIHRL+LGLLG +IPF+ LAF S       +V SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D+T DL +HLQTLY Q FRITLASSVLPRL   + Q T  +   +K +   W F  HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A V      + +    F     +LS+PPAFILSQDQ
Sbjct:   11 LATALHGSSRTTPSIHRLRLGLLGSLIPFAPLAFVSQCQCRPSRVLSPLVFFPISMHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRL---LAQNTVIVSSPRKEVDDPWAFHLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHHFPFDLHVLSMPPAFILSQDQ 227          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A5A7U6N9_CUCME (Uncharacterized protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U6N9_CUCME)

HSP 1 Score: 186 bits (473), Expect = 1.970e-54
Identity = 126/271 (46.49%), Postives = 152/271 (56.09%), Query Frame = 1
Query:    1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCSPFI----ATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQA 783
            + SFH VT  VYK  E IH  +AD R   + S+ ++   F  + + V+                 P+I    AT  HGSI T  SIHRL+LGLLGY+IPF+ LAF S       +  SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D+T+DL +HLQTLY Q FRI LASS                            F+ H  LL Q FAHC KFPTA+SR SL  VSV V LIILS+QLLI+AF  L PYQ ANQTQA
Sbjct:    1 MASFHSVTDGVYKAWERIHHRMAD-RHAPSVSTFSKAPLFQEDSQHVK-----------------PWILNALATAPHGSIRTAPSIHRLRLGLLGYLIPFAPLAFISQCQCRPSRGLSPLVFFPISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTVDLKSHLQTLYAQSFRIRLASSA---------------------------FYLHVALLHQAFAHCEKFPTAASRRSLGPVSVLVWLIILSDQLLIIAFGKLLPYQQANQTQA 226          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A3S3PC43_9MAGN (Uncharacterized protein n=2 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PC43_9MAGN)

HSP 1 Score: 177 bits (448), Expect = 6.030e-49
Identity = 112/211 (53.08%), Postives = 133/211 (63.03%), Query Frame = 1
Query:  202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTL-----------WVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQA 783
            +AT +HGSI T  SIHRL+LGLLGY+IPF+ LAF S       +V SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D T DL +HLQT Y Q F+ITLA  +      L     +EL       T +           W F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A   L P+QLANQTQA
Sbjct:   31 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDWTADLKSHLQTPYAQSFQITLACIL-----CLTAAAGTELADAYSSDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIAL--LLPHQLANQTQA 234          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A6N2ND82_SALVM (Ribosomal_S7 domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2ND82_SALVM)

HSP 1 Score: 159 bits (401), Expect = 1.940e-40
Identity = 102/200 (51.00%), Postives = 121/200 (60.50%), Query Frame = 1
Query:  202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQA 783
            +AT +HGSI T + +HRL+LGLLGY+IPF+ LAF S       +V SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D+T DL +HLQTLY Q FRITLASS                            F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIIL           L P+QLANQT+A
Sbjct:  201 LATALHGSIRT-APVHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSA---------------------------FYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILG-PATDHRLGKLLPHQLANQTRA 371          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A830CN56_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CN56_9LAMI)

HSP 1 Score: 147 bits (372), Expect = 3.470e-40
Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  343 ISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
            IS HFTA  +IP  PT+L  GSF+ +  VE  D+T DL +HLQTLYTQ  RITL SSVLPRL  L ++V              W F+ H  LLCQ F+HC KFPTA+SR SL RVSVPV LIILS+QLLI+A V      + +    F     +LS+PPAFILSQDQ
Sbjct:   18 ISTHFTALPEIPSAPTVLNHGSFHCLSRVEPWDLTADLKSHLQTLYTQSLRITLVSSVLPRL--LAQKVHDP-----------WAFYLHTALLCQAFSHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHPFLSNLHVLSMPPAFILSQDQ 171          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A2P5W7G6_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W7G6_GOSBA)

HSP 1 Score: 152 bits (383), Expect = 1.460e-39
Identity = 123/318 (38.68%), Postives = 155/318 (48.74%), Query Frame = 1
Query:    1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCSPF-----------------------------IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVE--LQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
            + S H VTG VYK RE IHR +AD+RLLA P+S  R     P  +    L           A CS                               +AT +HGSI T  SIHRL+LGLLGY+IPF+ LAF S       +V SP V  PIS HFTAP +IP  PT+L+  +   +      +  IT      L   Y+         +V+   P   ++V   L            F+ +A LL Q FAHC KFP A+SR SL RVSVPV LIILS+QLLI+A V      + +    F     +LS+PPAFILSQD+
Sbjct:   59 MASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRHVC-RPGHKGHDDLTSSSPSSGLSPAVCSGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLDALRPIIPDNACILCITTAAGTELADAYSP-------DTVIASSPG--KEVHDPL-----------AFYLYAALLRQAFAHCGKFPIAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHHFPSDLHVLSMPPAFILSQDR 355          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A830DFN2_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DFN2_9LAMI)

HSP 1 Score: 143 bits (360), Expect = 7.740e-39
Identity = 90/169 (53.25%), Postives = 107/169 (63.31%), Query Frame = 1
Query:  256 QLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFV 744
            ++GLLGY+I F+ LAF S       +V SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D+T D+  HLQ LY Q FRITL SSVLPRL  L  +V              W  + HA LL Q FAHC KFPTA+S  SL RVSVPV LIILS+ LLI+A V
Sbjct:   10 RIGLLGYLILFAPLAFVSQCQCRPNRVLSPLVFFPISTHFTAPSEIPSAPTVLQLGSFHRLSRVEPLDLTTDIKIHLQMLYAQSFRITLPSSVLPRL--LAHKVHDP-----------WASYLHAALLRQAFAHCVKFPTAASHRSLGRVSVPVWLIILSDHLLIIALV 165          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A5A7VJP9_CUCME (Uncharacterized protein n=2 Tax=fabids TaxID=91835 RepID=A0A5A7VJP9_CUCME)

HSP 1 Score: 145 bits (366), Expect = 1.530e-38
Identity = 98/215 (45.58%), Postives = 120/215 (55.81%), Query Frame = 1
Query:    1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TR--------------------------VAAFNPNLEQVQRLAYLHKFVSF----GLAQCSPFI---ATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRL 528
            + S H VTG VYK RE IHR +AD+RLLA P+S  R                           + F P        A+    +SF    G++     +   AT +HGSI T  SIHRL+LGLLGY+IPF+ LAF S       +V SP V   IS HFTAP +IP  PT+L+ GSF+ +  VE  D+T DL +HLQTLY Q FRITLASSVLPRL
Sbjct:   51 MASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRHVCRPGHKGHDDLTSSSPSSGLSPAVSSGFQPQRHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFSISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRL 265          
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A5D2YND6_GOSMU (Uncharacterized protein (Fragment) n=6 Tax=Pentapetalae TaxID=1437201 RepID=A0A5D2YND6_GOSMU)

HSP 1 Score: 141 bits (355), Expect = 8.490e-38
Identity = 89/177 (50.28%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  313 KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
            +V SP V  PIS HFTAP +IP  PT+L+ GSF+ +  VE  D+T DL +HLQTLY Q FRITLASS                            F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A V      + +    F     +LS+PPAFILSQD+
Sbjct:   26 RVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSA---------------------------FYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHHFPSDLHVLSMPPAFILSQDR 175          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M1DBW2_SOLTU5.100e-6853.3830S ribosomal protein S12, chloroplastic n=3 Tax=P... [more]
Q5W7C9_ORYSJ1.390e-6055.91Unknow protein n=2 Tax=Mesangiospermae TaxID=14371... [more]
A0A5A7U6N9_CUCME1.970e-5446.49Uncharacterized protein n=1 Tax=Cucumis melo var. ... [more]
A0A3S3PC43_9MAGN6.030e-4953.08Uncharacterized protein n=2 Tax=Cinnamomum micrant... [more]
A0A6N2ND82_SALVM1.940e-4051.00Ribosomal_S7 domain-containing protein n=1 Tax=Sal... [more]
A0A830CN56_9LAMI3.470e-4053.89Uncharacterized protein n=1 Tax=Phtheirospermum ja... [more]
A0A2P5W7G6_GOSBA1.460e-3938.68Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
A0A830DFN2_9LAMI7.740e-3953.25Uncharacterized protein n=1 Tax=Phtheirospermum ja... [more]
A0A5A7VJP9_CUCME1.530e-3845.58Uncharacterized protein n=2 Tax=fabids TaxID=91835... [more]
A0A5D2YND6_GOSMU8.490e-3850.28Uncharacterized protein (Fragment) n=6 Tax=Pentape... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig106contigA-nodosum_M_contig106:231882..233193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4113.PGSC0003DMT400086496
Preferred namerps12
PFAMsRibosom_S12_S23
Model size843
Max annot lvl2759|Eukaryota
KEGG koko:K02950
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons5
Evalue5.32e-26
EggNOG OGsCOG0048@1|root,KOG1750@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size276
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig106.5.1prot_A-nodosum_M_contig106.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig106 232410..232703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866444.8438013-UTR-A-nodosum_M_contig106:231881..2320781680866444.8438013-UTR-A-nodosum_M_contig106:231881..232078Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 231882..232078 +
1680866444.8597806-UTR-A-nodosum_M_contig106:232393..2324091680866444.8597806-UTR-A-nodosum_M_contig106:232393..232409Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 232394..232409 +
1680866444.9404633-UTR-A-nodosum_M_contig106:232703..2327421680866444.9404633-UTR-A-nodosum_M_contig106:232703..232742Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 232704..232742 +
1680866444.9527938-UTR-A-nodosum_M_contig106:232757..2330381680866444.9527938-UTR-A-nodosum_M_contig106:232757..233038Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 232758..233038 +
1680866444.962094-UTR-A-nodosum_M_contig106:233159..2331931680866444.962094-UTR-A-nodosum_M_contig106:233159..233193Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig106 233160..233193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866444.868359-CDS-A-nodosum_M_contig106:232409..2325071680866444.868359-CDS-A-nodosum_M_contig106:232409..232507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 232410..232507 +
1680866444.8768694-CDS-A-nodosum_M_contig106:232525..2327031680866444.8768694-CDS-A-nodosum_M_contig106:232525..232703Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig106 232526..232703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig106.5.1

>prot_A-nodosum_M_contig106.5.1 ID=prot_A-nodosum_M_contig106.5.1|Name=mRNA_A-nodosum_M_contig106.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSYKVPSPSVVLPISKHFTA
PLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*
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mRNA from alignment at A-nodosum_M_contig106:231882..233193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig106.5.1 ID=mRNA_A-nodosum_M_contig106.5.1|Name=mRNA_A-nodosum_M_contig106.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1312bp|location=Sequence derived from alignment at A-nodosum_M_contig106:231882..233193+ (Ascophyllum nodosum dioecious)
ATAACCAGCTTCCATGGTGTGACGGGCAGCGTGTACAAGACCCGGGAAGG GATTCACCGTTGTATAGCTGACCAGCGATTACTAGCGACTCCATCTTCAT GAACGCGAGTTGCAGCCTTCAATCCAAACTTAGAGCAAGTTCAAAGATTA GCTTATTTGCACAAATTCGTATCTTTTGGTCTTGCCCAATGTAGCCCGTG TGTAGCCCAGGGTGTAAGGGGCATGATGACTTGACGTCATCCGCACCTTC CTCCGGTTTGTAGCCGGCAGTCTTTCGAGATACCTTTTATAAAGCAACTA AAAACAATGGTTGCGCTCGTTGCGGGACTTAACCCAACATCTCACGACAC GAGCTGACGACAGCCATGCACCACCTGTTTATGTATTCCTAACGACACTT TATTTCTTTAAATAAATCCACAAAAGGTCAAACCCTGGTAAGGTTCTTCG CGTTGCATCGAATGAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGGC AATTCCTTCGAGTTTCATAGCTACGATAATGCATGGATCGATACACACAA CATCTAGTATCCATCGTTTACAGCTAGGACTACTGGGGTATATAATCCCA TTCTCTACCCTAGCTTTTGGCTCTTAGTGCCAGTAACAGCGCAGTAAAGT ACCTTCGCCATCGGTGGTCCTTCCAATCTCTAAGCATTTCACCGCTCCAC TGCAAATTCCCTTTACTCCTACTATCCTCAAGTCTGGAAGTTTCTATTAC GTGTTTGAAGTTGAGCTTCAAGATATAACAATAGACTTACTAAACCACCT ACAAACGCTTTACACCCAGTGATTCCGGATAACACTTGCATCCTCCGTAT TACCGCGACTGGTGGCACGGATTTAGCCGATGCTTATTCGTCAAGTAACG TCAGAACTTCTTCCTTGGCAAAAGAGGTTGACAACCCTGTGGGTTTTCTT CCCTCACGCGGTATTGCTCTGTCAGACTTTCGCCCATTGCAGAAAATTCC CCACTGCCTCCTCCCGTGGGAGCCTGGACCGTGTCTCAGTTCCAGTGTGA CTGATCATCCTCTCAAACCAGCTACTGATCGTCGCCTTCGTAGACCTTTA CCCTTACCAACTAGCTAATCAGACGCAAGCTTTTTCTTTAGGCGAATTAC TTCTTTCGTTATTACTAATGATATGCGGCATGAGCAGTCATTGTTCCCTG CTAAAGGTAAATTCTCACGTGTTACTCACCCGTCCGCCACTAAAGTTAAA AACTTTTATACGACTCGCATGTGTAAAGCATACCGCCAGCGTTCATCCTG AGCCAGGATCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig106:231882..233193+

>mRNA_A-nodosum_M_contig106.5.1 ID=mRNA_A-nodosum_M_contig106.5.1|Name=mRNA_A-nodosum_M_contig106.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig106:231882..233193+ (Ascophyllum nodosum dioecious)
ATGCATGGATCGATACACACAACATCTAGTATCCATCGTTTACAGCTAGG
ACTACTGGGGTATATAATCCCATTCTCTACCCTAGCTTTTGGCTCTTATA
AAGTACCTTCGCCATCGGTGGTCCTTCCAATCTCTAAGCATTTCACCGCT
CCACTGCAAATTCCCTTTACTCCTACTATCCTCAAGTCTGGAAGTTTCTA
TTACGTGTTTGAAGTTGAGCTTCAAGATATAACAATAGACTTACTAAACC
ACCTACAAACGCTTTACACCCAGTGA
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