mRNA_A-nodosum_M_contig106.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: M1DBW2_SOLTU (30S ribosomal protein S12, chloroplastic n=3 Tax=Pentapetalae TaxID=1437201 RepID=M1DBW2_SOLTU) HSP 1 Score: 224 bits (570), Expect = 5.100e-68 Identity = 142/266 (53.38%), Postives = 169/266 (63.53%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCS--------------PFIATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVA 738
+ S H VTG VYK RE IHR +A++RLLA P+S RVAA NPNL + L + +F A S +AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+ GSF+ + VE D+T DL +HLQTLY Q FRITLASSVLPRL + Q T K + W F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A
Sbjct: 1 MASSHSVTGGVYKARERIHRQMANRRLLAIPASCRRVAACNPNLGRF--LGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRL---LAQNTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIA 261
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: Q5W7C9_ORYSJ (Unknow protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q5W7C9_ORYSJ) HSP 1 Score: 202 bits (513), Expect = 1.390e-60 Identity = 123/220 (55.91%), Postives = 147/220 (66.82%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
+AT +HGS TT SIHRL+LGLLG +IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+ GSF+ + VE D+T DL +HLQTLY Q FRITLASSVLPRL + Q T + +K + W F HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A V + + F +LS+PPAFILSQDQ
Sbjct: 11 LATALHGSSRTTPSIHRLRLGLLGSLIPFAPLAFVSQCQCRPSRVLSPLVFFPISMHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRL---LAQNTVIVSSPRKEVDDPWAFHLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHHFPFDLHVLSMPPAFILSQDQ 227
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A5A7U6N9_CUCME (Uncharacterized protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U6N9_CUCME) HSP 1 Score: 186 bits (473), Expect = 1.970e-54 Identity = 126/271 (46.49%), Postives = 152/271 (56.09%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCSPFI----ATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQA 783
+ SFH VT VYK E IH +AD R + S+ ++ F + + V+ P+I AT HGSI T SIHRL+LGLLGY+IPF+ LAF S + SP V PIS HFTAP +IP PT+L+ GSF+ + VE D+T+DL +HLQTLY Q FRI LASS F+ H LL Q FAHC KFPTA+SR SL VSV V LIILS+QLLI+AF L PYQ ANQTQA
Sbjct: 1 MASFHSVTDGVYKAWERIHHRMAD-RHAPSVSTFSKAPLFQEDSQHVK-----------------PWILNALATAPHGSIRTAPSIHRLRLGLLGYLIPFAPLAFISQCQCRPSRGLSPLVFFPISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTVDLKSHLQTLYAQSFRIRLASSA---------------------------FYLHVALLHQAFAHCEKFPTAASRRSLGPVSVLVWLIILSDQLLIIAFGKLLPYQQANQTQA 226
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A3S3PC43_9MAGN (Uncharacterized protein n=2 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PC43_9MAGN) HSP 1 Score: 177 bits (448), Expect = 6.030e-49 Identity = 112/211 (53.08%), Postives = 133/211 (63.03%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTL-----------WVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQA 783
+AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+ GSF+ + VE D T DL +HLQT Y Q F+ITLA + L +EL T + W F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A L P+QLANQTQA
Sbjct: 31 LATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDWTADLKSHLQTPYAQSFQITLACIL-----CLTAAAGTELADAYSSDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIAL--LLPHQLANQTQA 234
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A6N2ND82_SALVM (Ribosomal_S7 domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2ND82_SALVM) HSP 1 Score: 159 bits (401), Expect = 1.940e-40 Identity = 102/200 (51.00%), Postives = 121/200 (60.50%), Query Frame = 1
Query: 202 IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQA 783
+AT +HGSI T + +HRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+ GSF+ + VE D+T DL +HLQTLY Q FRITLASS F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIIL L P+QLANQT+A
Sbjct: 201 LATALHGSIRT-APVHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSA---------------------------FYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILG-PATDHRLGKLLPHQLANQTRA 371
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A830CN56_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CN56_9LAMI) HSP 1 Score: 147 bits (372), Expect = 3.470e-40 Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 1
Query: 343 ISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
IS HFTA +IP PT+L GSF+ + VE D+T DL +HLQTLYTQ RITL SSVLPRL L ++V W F+ H LLCQ F+HC KFPTA+SR SL RVSVPV LIILS+QLLI+A V + + F +LS+PPAFILSQDQ
Sbjct: 18 ISTHFTALPEIPSAPTVLNHGSFHCLSRVEPWDLTADLKSHLQTLYTQSLRITLVSSVLPRL--LAQKVHDP-----------WAFYLHTALLCQAFSHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHPFLSNLHVLSMPPAFILSQDQ 171
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A2P5W7G6_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W7G6_GOSBA) HSP 1 Score: 152 bits (383), Expect = 1.460e-39 Identity = 123/318 (38.68%), Postives = 155/318 (48.74%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TRVAAFNPNLEQVQRLAYLHKFVSFGLAQCSPF-----------------------------IATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVE--LQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
+ S H VTG VYK RE IHR +AD+RLLA P+S R P + L A CS +AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V PIS HFTAP +IP PT+L+ + + + IT L Y+ +V+ P ++V L F+ +A LL Q FAHC KFP A+SR SL RVSVPV LIILS+QLLI+A V + + F +LS+PPAFILSQD+
Sbjct: 59 MASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRHVC-RPGHKGHDDLTSSSPSSGLSPAVCSGHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLDALRPIIPDNACILCITTAAGTELADAYSP-------DTVIASSPG--KEVHDPL-----------AFYLYAALLRQAFAHCGKFPIAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHHFPSDLHVLSMPPAFILSQDR 355
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A830DFN2_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DFN2_9LAMI) HSP 1 Score: 143 bits (360), Expect = 7.740e-39 Identity = 90/169 (53.25%), Postives = 107/169 (63.31%), Query Frame = 1
Query: 256 QLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFV 744
++GLLGY+I F+ LAF S +V SP V PIS HFTAP +IP PT+L+ GSF+ + VE D+T D+ HLQ LY Q FRITL SSVLPRL L +V W + HA LL Q FAHC KFPTA+S SL RVSVPV LIILS+ LLI+A V
Sbjct: 10 RIGLLGYLILFAPLAFVSQCQCRPNRVLSPLVFFPISTHFTAPSEIPSAPTVLQLGSFHRLSRVEPLDLTTDIKIHLQMLYAQSFRITLPSSVLPRL--LAHKVHDP-----------WASYLHAALLRQAFAHCVKFPTAASHRSLGRVSVPVWLIILSDHLLIIALV 165
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A5A7VJP9_CUCME (Uncharacterized protein n=2 Tax=fabids TaxID=91835 RepID=A0A5A7VJP9_CUCME) HSP 1 Score: 145 bits (366), Expect = 1.530e-38 Identity = 98/215 (45.58%), Postives = 120/215 (55.81%), Query Frame = 1
Query: 1 ITSFHGVTGSVYKTREGIHRCIADQRLLATPSS*TR--------------------------VAAFNPNLEQVQRLAYLHKFVSF----GLAQCSPFI---ATIMHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSY------KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRL 528
+ S H VTG VYK RE IHR +AD+RLLA P+S R + F P A+ +SF G++ + AT +HGSI T SIHRL+LGLLGY+IPF+ LAF S +V SP V IS HFTAP +IP PT+L+ GSF+ + VE D+T DL +HLQTLY Q FRITLASSVLPRL
Sbjct: 51 MASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRHVCRPGHKGHDDLTSSSPSSGLSPAVSSGFQPQRHAPPVSAFPKAPLSFKRIRGMSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFSISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRL 265
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Match: A0A5D2YND6_GOSMU (Uncharacterized protein (Fragment) n=6 Tax=Pentapetalae TaxID=1437201 RepID=A0A5D2YND6_GOSMU) HSP 1 Score: 141 bits (355), Expect = 8.490e-38 Identity = 89/177 (50.28%), Postives = 106/177 (59.89%), Query Frame = 1
Query: 313 KVPSPSVVLPISKHFTAPLQIPFTPTILKSGSFYYVFEVELQDITIDLLNHLQTLYTQ*FRITLASSVLPRLPMLIRQVTSELLPWQKRLTTLWVFFPHAVLLCQTFAHCRKFPTASSRGSLDRVSVPV*LIILSNQLLIVAFVDLYPYQLANQTQAFSLGELLLSIPPAFILSQDQ 843
+V SP V PIS HFTAP +IP PT+L+ GSF+ + VE D+T DL +HLQTLY Q FRITLASS F+ HA LL Q FAHC KFPTA+SR SL RVSVPV LIILS+QLLI+A V + + F +LS+PPAFILSQD+
Sbjct: 26 RVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSA---------------------------FYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALVLTRYSPVRHWKHHFPSDLHVLSMPPAFILSQDR 175 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig106.5.1 >prot_A-nodosum_M_contig106.5.1 ID=prot_A-nodosum_M_contig106.5.1|Name=mRNA_A-nodosum_M_contig106.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp MHGSIHTTSSIHRLQLGLLGYIIPFSTLAFGSYKVPSPSVVLPISKHFTAback to top mRNA from alignment at A-nodosum_M_contig106:231882..233193+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig106.5.1 ID=mRNA_A-nodosum_M_contig106.5.1|Name=mRNA_A-nodosum_M_contig106.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1312bp|location=Sequence derived from alignment at A-nodosum_M_contig106:231882..233193+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig106:231882..233193+ >mRNA_A-nodosum_M_contig106.5.1 ID=mRNA_A-nodosum_M_contig106.5.1|Name=mRNA_A-nodosum_M_contig106.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig106:231882..233193+ (Ascophyllum nodosum dioecious)back to top |