mRNA_A-nodosum_M_contig106.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.340e-49 Identity = 80/141 (56.74%), Postives = 106/141 (75.18%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKH 670
GFKL T++D+NW NPD GKSTSSY+ +L N P+SF+ LQ LTA S MEAEL+ +A+ MK+++FC NM+TELGF + F + VY DNT+ L GN +FS R K+IALR+ F++ELV EGK++IH+ TE LA +GTKH
Sbjct: 54 GFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKH 194
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 172 bits (437), Expect = 4.970e-48 Identity = 81/141 (57.45%), Postives = 107/141 (75.89%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKH 670
GFKL T++D+NW NPD GKSTSSY+ +L N P+SF+ LQ LTA S MEAEL+ +A+ MK+++FC NM+TELGF + F + VY DNT+ L GN +FS R K+IALR+ F++ELV EGK++IH+ TE LAD+GTKH
Sbjct: 279 GFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKH 419
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 176 bits (445), Expect = 5.790e-47 Identity = 82/141 (58.16%), Postives = 109/141 (77.30%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKH 670
GFKL T++D+NW NPD GKSTSSY+ +L N P+SF+ LQ LTA S MEAEL+ +A+ MK+++FC NM+TELGF + F + VY DNT+ L GN +FS R K+IALR+ F++ELV EGK++IH+V+TE LAD+GTKH
Sbjct: 839 GFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKH 979
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 171 bits (434), Expect = 3.670e-46 Identity = 81/141 (57.45%), Postives = 107/141 (75.89%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKH 670
GFKL T++D+NW NPD GKSTSSY+ +L N P+SF+ LQ LTA S MEAEL+ +A+ MK+++FC NM+TELG + F + VY DNT+ L GN +FS R K+IALR+ F++ELV EGK++IH+V TE LAD+GTKH
Sbjct: 500 GFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 640
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.250e-44 Identity = 80/141 (56.74%), Postives = 106/141 (75.18%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKH 670
GFKL T++D+NW NPD GKSTSSY+ +L N P+SF+ LQ LTA S MEAEL+ +A+ M +++F NM+TELGF + F + VY DNT+ L GN +FS R K+IALR+ F++ELV EGK++IH+V TE LAD+GTKH
Sbjct: 1508 GFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 1648
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 164 bits (414), Expect = 8.630e-43 Identity = 79/142 (55.63%), Postives = 107/142 (75.35%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKHL 673
GF LT +D NWG NPD KS SSYI +++ P+SFK LQSLTA S +EAEL+ AA+ MK+++FC NM+ ELGF F S +YI NT+ L V GN+TFS R K++ALR+ +++E+VKEG+++IH++ TE LAD+GTKHL
Sbjct: 533 GFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHL 673
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.490e-41 Identity = 75/142 (52.82%), Postives = 105/142 (73.94%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKHL 673
GFKLT +TD+NWG NPD GKSTSS++ +L + P++FK LQSLT QS ME EL+ AA+ +K+++FC N++TELGF + V +Y DNT+ L GN ++S K+IALR+ F++ELV EG++ IH+V + AD+GTKHL
Sbjct: 562 GFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHL 703
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 156 bits (394), Expect = 4.320e-40 Identity = 70/142 (49.30%), Postives = 105/142 (73.94%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKHL 673
G KL T++++NW NPD GKS+S Y+ +L N P+SFK +Q TA S MEAEL+ +A+ MK+++FC N++TELG + F V +Y DNT+ L GN +FS R K+IALR+ +++EL+ EG+++IH++ T+ +AD+GTKHL
Sbjct: 1009 GSKLATFSESNWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHL 1150
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 155 bits (393), Expect = 5.910e-40 Identity = 75/145 (51.72%), Postives = 105/145 (72.41%), Query Frame = 2
Query: 239 RSSGFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYVFVQELVKEGKVTIHFVKTEQQLADLGTKHL 673
+S GFKL T++DTNW NPD GKSTS Y +L + P+S K +Q A S MEAEL+ +A+ MK+++FC NM+TELGF + F V +Y DNT+ L GN +FS R +IALR+ +++ELV EG+++IH+V T+ LAD+GTK+L
Sbjct: 1034 KSEGFKLGTFSDTNWANNPDNGKSTSCYWTMLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYL 1178
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.670e-37 Identity = 82/217 (37.79%), Postives = 108/217 (49.77%), Query Frame = 2
Query: 248 GFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLSFKVNLQSLTAQSAMEAELMTAAIVMKKSLFCRNMVTELGFTEGFWSVLVYIDNTSALQVAGNETFSPRAKYIALRYV----------------------------------------------------------------------------FVQELVKEGKVTIHFVKTEQQLADLGTKH 670
GFKL T++D+NW NPD GKSTSSY+ +L N P+SF+ LQ LTA S MEAEL+ +A+ MK+++FC NM+TELGF + F + VY DNT+ L GN +FS R K+IALR+ F++ELV EGK++IH+V TE LAD+GTKH
Sbjct: 25 GFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 241 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig106.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig106.10.1 >prot_A-nodosum_M_contig106.10.1 ID=prot_A-nodosum_M_contig106.10.1|Name=mRNA_A-nodosum_M_contig106.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=159bp MRRTTISRTSASARSSGFKLTTYTDTNWGGNPDKGKSTSSYIGILTNGPLback to top mRNA from alignment at A-nodosum_M_contig106:358655..359977+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig106.10.1 ID=mRNA_A-nodosum_M_contig106.10.1|Name=mRNA_A-nodosum_M_contig106.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1323bp|location=Sequence derived from alignment at A-nodosum_M_contig106:358655..359977+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig106:358655..359977+ >mRNA_A-nodosum_M_contig106.10.1 ID=mRNA_A-nodosum_M_contig106.10.1|Name=mRNA_A-nodosum_M_contig106.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=477bp|location=Sequence derived from alignment at A-nodosum_M_contig106:358655..359977+ (Ascophyllum nodosum dioecious)back to top |