mRNA_A-nodosum_M_contig1058.41.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1058.41.2
Unique NamemRNA_A-nodosum_M_contig1058.41.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: D7FX86_ECTSI (Nucleoside diphosphate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX86_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 3.250e-74
Identity = 114/154 (74.03%), Postives = 127/154 (82.47%), Query Frame = 2
Query:   38 FTGVPGTSRERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEP 499
            +TG+PG+  ERSFFA+KPDGLQRGLVGE++SRFERKGW LV LKM+   R LVE+HYEEH+ KDFFE LL+YM  GPVVAMVWEG  VIAGGRK LLGATNPL A  GTIRGDLC  AG+NLVHASDGPESA+REI LWF  EE V W RA +P
Sbjct:   53 WTGMPGSITERSFFAIKPDGLQRGLVGEVMSRFERKGWKLVGLKMLTPGRQLVERHYEEHADKDFFEKLLDYMCSGPVVAMVWEGHNVIAGGRK-LLGATNPLEAGAGTIRGDLCTNAGRNLVHASDGPESARREIELWFSREETVQWGRATDP 205          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: NDK_THEVB (Nucleoside diphosphate kinase n=9 Tax=Cyanobacteria TaxID=1117 RepID=NDK_THEVB)

HSP 1 Score: 199 bits (507), Expect = 8.510e-61
Identity = 91/147 (61.90%), Postives = 117/147 (79.59%), Query Frame = 2
Query:   65 ERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            ER+F A+KPDG+QRGLVG I+ RFE+KG+TLV LK++ VSR L EQHY EH  K FF  L+N+++ GPVVAMVWEG+GVIA  RK L+GATNPLNAE GT+RGD  +  G+N++H SD PE+A+REI LWF+ +E+VPW  A+  W+
Sbjct:    2 ERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARK-LIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWV 147          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: A0A835Z9B5_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B5_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.560e-60
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 2
Query:   35 PFTGVPGTSRERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWIS 508
            P+TG PGT  ERSF A+KP+GLQRGLVG++++RFERKG  LVALK+   + + V QHY EH GK FF  L+ +M  GP+V MVWEG  VI GGR+ +LG T+PL AE GTIRGDLC+C+ +NLVHASD P+SA REI LWF E E+ PW R  E +++
Sbjct:   37 PYTGSPGTLAERSFVAIKPEGLQRGLVGDVITRFERKGLKLVALKLEQPTPAKVRQHYAEHEGKPFFAGLVRHMCSGPLVLMVWEGPNVIEGGRR-MLGKTDPLEAEPGTIRGDLCVCSTRNLVHASDAPDSALREIRLWFSEAELAPWGRTSEEYLT 193          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: UPI001A05EC99 (Nucleoside-diphosphate kinase n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A05EC99)

HSP 1 Score: 197 bits (501), Expect = 6.630e-60
Identity = 93/147 (63.27%), Postives = 118/147 (80.27%), Query Frame = 2
Query:   65 ERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            ER+F AVKPDG+QR LVGEI+SRFE KG+TLV LK++ VSRSL EQHY EH  K FF +L+ +++ GPVVAMVWEGKGV+A  RK ++G+TNPLNAE GTIRGD  +  G+N++H SD  E+AKREI+LWF+EEE+V W  ++  WI
Sbjct:    2 ERTFIAVKPDGVQRQLVGEIISRFESKGFTLVGLKLVKVSRSLAEQHYAEHKEKPFFPSLVEFITSGPVVAMVWEGKGVVAAARK-MIGSTNPLNAEPGTIRGDFGVDVGRNIIHGSDAVETAKREISLWFKEEELVGWEPSLTRWI 147          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: A0A7S2ACX5_9EUKA (Nucleoside diphosphate kinase (Fragment) n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2ACX5_9EUKA)

HSP 1 Score: 199 bits (507), Expect = 9.740e-60
Identity = 89/158 (56.33%), Postives = 120/158 (75.95%), Query Frame = 2
Query:   32 VPFTGVPGTSRERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            VP  G+PGT+ ER+F A+KPDG+QRGLVGE++ RFE +G+ LVA+KM+  +     +HY++ S K FF  L  Y S GPVVAMVWEGKG I+GGRK L+GATNP ++  G+IRGDLCI  G+N++H SDGP+SAK EIALWF++ +V  W ++ + W+
Sbjct:   69 VPLVGIPGTNNERTFIAIKPDGVQRGLVGEVIKRFEARGYKLVAIKMVRPTPQFAAKHYQDLSKKPFFPGLCKYFSSGPVVAMVWEGKGAISGGRK-LVGATNPADSLPGSIRGDLCIDIGRNIIHGSDGPDSAKHEIALWFKDADVAAWQQSTQQWV 225          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: A0A1U7I7F4_9CYAN (Nucleoside diphosphate kinase n=3 Tax=Phormidium TaxID=1198 RepID=A0A1U7I7F4_9CYAN)

HSP 1 Score: 195 bits (496), Expect = 3.760e-59
Identity = 90/147 (61.22%), Postives = 115/147 (78.23%), Query Frame = 2
Query:   65 ERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            ER+F A+KPDG+QR LVGEI+SR E KG+TLV LK++ VSR L EQHY+ H  + FF  L+++++ GPVVAMVWEG GVIA  RK ++GATNPLNAE GTIRGD  +  G+NL+H SD PE+A REI+LWF++EE+V W   I PW+
Sbjct:    2 ERTFLAIKPDGVQRSLVGEIISRLESKGFTLVGLKLVKVSRELAEQHYDVHKERPFFPGLVDFITSGPVVAMVWEGDGVIASARK-IIGATNPLNAEPGTIRGDFGVSVGRNLIHGSDAPETATREISLWFKDEELVSWQPTITPWL 147          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: A0A1Z4NI87_9CYAN (Nucleoside diphosphate kinase n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NI87_9CYAN)

HSP 1 Score: 194 bits (493), Expect = 1.070e-58
Identity = 89/147 (60.54%), Postives = 117/147 (79.59%), Query Frame = 2
Query:   65 ERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            ER+F A+KPDG+QRGLVGEI+SRFE KG+TLV LK++ VSR L E HY+ H  + FF  L+ +++ GPVVAMVWEG GVIA  RK ++GATNPLNAE GTIRGDL I  G+N++H SD PE+A++E++LWF++EE+V W   + PW+
Sbjct:    2 ERTFLAIKPDGVQRGLVGEIISRFETKGFTLVGLKLLNVSRELAEAHYDVHRERPFFPGLVEFITSGPVVAMVWEGDGVIAAARK-MIGATNPLNAEPGTIRGDLGINIGRNIIHGSDAPETAQKEVSLWFKDEELVSWQPQMTPWL 147          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: L8GQE5_ACACA (Nucleoside diphosphate kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQE5_ACACA)

HSP 1 Score: 197 bits (500), Expect = 1.500e-58
Identity = 91/162 (56.17%), Postives = 120/162 (74.07%), Query Frame = 2
Query:   32 VPFTGVPGTSRERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWISRSL 517
            VP TG+PGT  ER+F A+KPDG+QRG+VGEI+ RFE+KG+ LV LK++  ++   EQHY + S K FF +L+NY S GPVVAMV+EG+  I  GRK ++GATNP +AE G++RGDLCI  G+N++H SDGPESAK EI+LWF+E E+  W      W+   L
Sbjct:   76 VPHTGLPGTRFERTFIAIKPDGVQRGIVGEIIQRFEKKGYKLVGLKVVKPTKQFAEQHYADLSKKPFFPSLVNYFSSGPVVAMVFEGRNAIVNGRK-IVGATNPADAEAGSVRGDLCIDIGRNIIHGSDGPESAKDEISLWFKEGELANWESENAKWVYEKL 236          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase n=7 Tax=Cyanobacteria TaxID=1117 RepID=NDK_ACAM1)

HSP 1 Score: 194 bits (492), Expect = 1.510e-58
Identity = 90/147 (61.22%), Postives = 116/147 (78.91%), Query Frame = 2
Query:   65 ERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            ER+F AVKPDG+QRGLVGEI+SR+E KG+TLV LK+++VSR L EQHY EH  K FF  L+++++ GPVVAMVWEGKGV+A  RK ++GATNPL +E GTIRGD  I  G+N++H SD  E+A+REI+LWF+ EE+  WS  +  WI
Sbjct:    2 ERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKGVVAAARK-IIGATNPLGSEPGTIRGDFGIDIGRNIIHGSDAVETAQREISLWFKSEELADWSPTLTSWI 147          
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Match: UPI0016868270 (Nucleoside-diphosphate kinase n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016868270)

HSP 1 Score: 194 bits (492), Expect = 1.510e-58
Identity = 88/147 (59.86%), Postives = 116/147 (78.91%), Query Frame = 2
Query:   65 ERSFFAVKPDGLQRGLVGEIVSRFERKGWTLVALKMIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRKQLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEEVVPWSRAIEPWI 505
            ER+F A+KPDG+QRGLVGE++ RFE KG+TL+ LK++ VSR L EQHY  H  + FF  L+++++ GPVVAMVWEG GVIA  RK ++GATNPLNAE+GTIRGD  +  G+NL+H SD PE+A+ EI+LWF+EEE++ W   I PW+
Sbjct:    2 ERTFIAIKPDGVQRGLVGEVIRRFESKGFTLIGLKLMNVSRELAEQHYGVHKERPFFPGLVSFITSGPVVAMVWEGDGVIATSRK-MIGATNPLNAELGTIRGDFGVSVGRNLIHGSDAPETAQSEISLWFKEEELMDWKPTITPWL 147          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1058.41.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX86_ECTSI3.250e-7474.03Nucleoside diphosphate kinase n=2 Tax=Ectocarpus T... [more]
NDK_THEVB8.510e-6161.90Nucleoside diphosphate kinase n=9 Tax=Cyanobacteri... [more]
A0A835Z9B5_9STRA1.560e-6060.13Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
UPI001A05EC996.630e-6063.27Nucleoside-diphosphate kinase n=1 Tax=Oscillatoria... [more]
A0A7S2ACX5_9EUKA9.740e-6056.33Nucleoside diphosphate kinase (Fragment) n=1 Tax=S... [more]
A0A1U7I7F4_9CYAN3.760e-5961.22Nucleoside diphosphate kinase n=3 Tax=Phormidium T... [more]
A0A1Z4NI87_9CYAN1.070e-5860.54Nucleoside diphosphate kinase n=1 Tax=Calothrix sp... [more]
L8GQE5_ACACA1.500e-5856.17Nucleoside diphosphate kinase n=1 Tax=Acanthamoeba... [more]
NDK_ACAM11.510e-5861.22Nucleoside diphosphate kinase n=7 Tax=Cyanobacteri... [more]
UPI00168682701.510e-5859.86Nucleoside-diphosphate kinase n=1 Tax=Oscillatoria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1058contigA-nodosum_M_contig1058:237694..241499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX86
PFAMsNDK
Model size944
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006139,GO:0006163,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046939,GO:0055086,GO:0061508,GO:0070013,GO:0071704,GO:0072521,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons5
Evalue1.25e-49
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-26_003930.1
EC2.7.4.6
DescriptionNucleoside diphosphate kinase
Cds size351
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1058.41.2prot_A-nodosum_M_contig1058.41.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1058 238118..239907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866442.8976266-UTR-A-nodosum_M_contig1058:237693..2381171680866442.8976266-UTR-A-nodosum_M_contig1058:237693..238117Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1058 237694..238117 -
1680866442.9573772-UTR-A-nodosum_M_contig1058:239907..2399971680866442.9573772-UTR-A-nodosum_M_contig1058:239907..239997Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1058 239908..239997 -
1680866442.967163-UTR-A-nodosum_M_contig1058:241420..2414991680866442.967163-UTR-A-nodosum_M_contig1058:241420..241499Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1058 241421..241499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866442.9104407-CDS-A-nodosum_M_contig1058:238117..2382451680866442.9104407-CDS-A-nodosum_M_contig1058:238117..238245Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 238118..238245 -
1680866442.9265532-CDS-A-nodosum_M_contig1058:238733..2388061680866442.9265532-CDS-A-nodosum_M_contig1058:238733..238806Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 238734..238806 -
1680866442.9361262-CDS-A-nodosum_M_contig1058:239266..2393591680866442.9361262-CDS-A-nodosum_M_contig1058:239266..239359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 239267..239359 -
1680866442.9475436-CDS-A-nodosum_M_contig1058:239850..2399071680866442.9475436-CDS-A-nodosum_M_contig1058:239850..239907Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1058 239851..239907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1058.41.2

>prot_A-nodosum_M_contig1058.41.2 ID=prot_A-nodosum_M_contig1058.41.2|Name=mRNA_A-nodosum_M_contig1058.41.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MIIVSRSLVEQHYEEHSGKDFFENLLNYMSLGPVVAMVWEGKGVIAGGRK
QLLGATNPLNAEVGTIRGDLCICAGKNLVHASDGPESAKREIALWFREEE
VVPWSRAIEPWISRSL*
back to top

mRNA from alignment at A-nodosum_M_contig1058:237694..241499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1058.41.2 ID=mRNA_A-nodosum_M_contig1058.41.2|Name=mRNA_A-nodosum_M_contig1058.41.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3806bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:237694..241499- (Ascophyllum nodosum dioecious)
GTTCCCAGATGATGAGAACTTGAACTTGGATGTACCCTTCACAGGTGTTC CGGGAACCTCGAGGGAGAGGTCATTCTTCGTGAGTCTCCTTTGTTACGTC TAAAGCAACAGCAAAGCAACGCGCTGTCTCGCGTGTACCTCGAAGTTGGT GTCTGAGCTTTGACGCAGCATGTAGAAAGAAGAAAGCCTTCAACTACGAG TATACTGTACAGTAAAAAAAAATAAGGACGTTTTGTGTACGTTGCACTTC CTTCCTCTTCGAGGCAAGAACGGACCCAGGACAGGGGAAGGAAAATCAGT GCTTCGAGCGTGGTTCGTCATTCGCATCCCTTGCCACCAAACTCTATTTT TGCGCGGTGTTGATAAAGTTCTTACGCACGGTAGCTTGTACTCCATGTAT GTTGAATAGTTTAATGCAAGACAGAAACTACACCGTACTCTGCGTGACTA TACTGTTATAGACTAGAGGTTGAACCTTACTTTCTCGCTTAGTCATGCTT ACAGTGCCTCTCAACATCATGAGGAGGGCACAACGTACAAATTCCGTCCA CATAGCGAAGATTCGCTCCATGGTTTCTGTTTTCAAGGCGATAACCCCTA GAATTTAAAGTCACGTGACTGTCTAGCAGGGGCTATCACCTCGAAAATAG GCAAAAGGTGTGCTTGATAGGCTAGAACAAACCCGCTGCGAACAGTGATC TCCGGGGCACTCTTGCCTCGTCACGAACTGGTGTCTAGGCGGCTCCCTTG TACAAACAGTACCCGCGGCGAGAATCGAACTCACAGTCTGTTTTCAAGGT GGTAACCCCTGCCATTGTCGCCTTGAAAACAAATGTAGAAATCGCGAGTT CGATTCTCGCCGCGAGTACTACTTGCCAAGGGAGCCGCCTAGTAGTACCA GTTCTGTGCGGGAGGAGAGTGCCGCGGAGGTCACTGTTCGCGGCGGGTTT ATTCTAGCCCACGAACACACATTTTTTGTCTGTTTTCAACAGGTGATGAG ACTGCGTAACCTAGGGTTGATCGCCTTTTGAAAACAGACACATGGTACGC GTCATGACGCTCATCTTGACTCATGGGGTACACGTCATGACATACGGTCA TGATGCACTACATGGCGTGCGGTATTAGATGCCCGATAACGTATAACATC GGCGAGATACCTACAGCAAAGAGTAGCATGACAGATCATATGCAAGGATA TTGATCTCCAACCACGAAGCATGCCGCACGTCACGTCGGTGCTCCCTTAA CATGGGAAAGGTAACCGCGTCTAAAAAAAGTGGCAATCGACTGCCGAGCT TCAAATTAAAATAAGTACTCGTACACATCAGACGTTCGTCGGTTTTGTCC AGCGTCGGAAGACTGTCTCCAGGATGTTTTCCCACGGGATCTCCCTCGCC GGCGTGGGCTGTACGAATCGCGCCTCCTCTTCCAACCGCGGGCCAATGAC GTTCGATGCTGCTTTTAACTACGGCTGCTGAATGCATGTGTTCCGCCCGT AGGCGGTGAAGCCAGACGGGCTTCAGCGAGGTTTGGTTGGGGAAATCGTG TCGCGCTTCGAGCGCAAGGGTTGGACACTGGTTGCCCTTAAGATGATTAT CGTGAGCCGGTCGCTCGTGGAGCAGCACTACGAGGAGCACTCTGGGAAGG CAAGGAGATAGGGAGGGAGGGAAAGGGGGCGGGGGGGGGGGGTGAGCCAC GCGATTCTTGAACCCCATCGAGTAAATCGAAAATACTTCGAACAGAGGTA GAAAATTGATTCCCTGCTGTAAATATCTCTGAATTATGCCTTATATCGCA ATACCGAAATATGTCTAGCAAGTTCAAGTATAAGATCGAGACACAGACTT ATATCTTCGGGGTTGGCACACGTGCAGCGGAGAAGCTTCCGATAACCCTT TCAACCCCCCCTCCCCCGAAAAATCTTCCGGACGCCTCTCTAGCTTTCTG CTCTTGTCTCCCCATCATATCCTCCCTCTACGCGCGTCTATCGCCGCGCC ACTACCTCTATTGGAAAACCCCCATTCATGCCGCTTCAACTCTATTCCTC CTCAAGAAATCCTCCACAGCTCTAGATTCGAATTTCCTTGAAATTTGTTC TGTACCTGCGTTACATGCTGATATTATGTACGCGACGCAGGACTTCTTCG AAAATCTCCTCAACTATATGTCGTTGGGTCCTGTTGTGGCGATGGTTTGG GAAGGGAAAGGCGTCATCGCTGGAGGTCGAAAGGTGACTTACGGCTTTCG TACTTGGTGTGTTTGTATTATTTTGTATTATGTACGGAGCGAGCATGTTT ATGCGCCACCCCCGAACCCCGGCTCTGAGTATTTTGTTATTGTCTTTCCC GCTCACCGTCGGCGATGCAAGATGGCGTGTCGCTTCCTGCACGTCTTCGT TGGGGGAAACCGCCGCTATCCTGTCCCCGTAACCCCACTGAATCAAATCT AGCTCATGCATCTGTTCCTTTGGGCCAACTATTTAGGGATGACAGAGCGG GACGAGACTGACTCTCTCGACATGGACGAAGTCTCTTAGGACACATAATG CTACGGCTCTAGCGTGCGTTGTCGCTCTTTTTCTTTTGCCGACGCTCGCT CCTTCCGAAGTACCCGAATTAGTAATAGTTATTATACTAGCGTTGGTTCA CCCCTCGGCTGGAACGTGACCGACCGCTCTCCCTTGTTTCGAGCAGCTCT TGGGGGCAACGAATCCGCTCAATGCGGAGGTGGGTACGATTCGAGGGGAC CTCTGCATCTGTGCAGGTACGTCCTTGAATGTAGCGGCGCAGGGGCTGTG CCAACTTATGTCTGTTGAGAGTATCCGAATCATGGGGTAAAACAAAGGGG GCCCGGCAGCACATGCCGTGGCAAACTATTGGGGCGATTTCTATGGCGTC CTCTGTCCTCGTGACGCTTAAGCGGCATTACCGATGGCATCGTAAAAAAT TAAAAATTATGAAAGTAAATAGCACCAGACTTCACAGTGATATCTATCTG TTGATTTTTATATGGTCGCAAATTGCGTCTGTTGCCCACACGCGAGGGAA GGGACGGCTCCCGCGTCCAGCAAGCTGCTGACACAGTACAAGCTCTGCAC ATATTTTGCAAAACCCAACCACGAATTCGGTCCCGACGCTACCGCTACCT CCAGTTGCCCGTGTTGGTTAAGGCGCGCTTATGCATCGCTAAAGTAACGC GAAAAAAGAGTAATCGTCGTGTATTGCACGCGCGCCCGGTCGTTCTCCGC TTAGGCAAGAACCTTGTCCATGCTTCCGACGGGCCGGAGTCGGCAAAACG CGAGATCGCCTTGTGGTTTCGGGAGGAGGAGGTCGTACCCTGGAGTCGAG CCATAGAACCCTGGATCTCGAGAAGTCTCTAACAGTCAAGGCAGACTCAG TAATTTGTATACCGGCGCGCTGTGCAGTTTTTTGCTGGTACGCGCGGAAG CAAGCGTCTTGCTGGCGAAGAGGGGTTACCCGGGTATGGAAGCTGCGTGC TTGCGTATGGCTTGGCGCGAAGACAACTGAAGTGGGCTCTCTGGAGTCCC TGTAGTAAAAAGCGGATTAAGAAGTAAGGCGCTGCGTTCGTGCGGGTGTT TCGGTCGACTTATAAATAAAATATAAAATATAAAAACTCGCGAGCTTCTC TGCAGATCGTACTCTCATATGTAAGTATACAGTCATGGCTTGGGAGGCCA TGGCAGGTACGCCTGGGTCGCTACAGGCTAAGCAGAAGCTATAGCTGTAA TATACAGTCACACAAAAATAGAAGCGGTGTCCCAGTCCGGTGTGGACAAG AGCGTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1058:237694..241499-

>mRNA_A-nodosum_M_contig1058.41.2 ID=mRNA_A-nodosum_M_contig1058.41.2|Name=mRNA_A-nodosum_M_contig1058.41.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1058:237694..241499- (Ascophyllum nodosum dioecious)
ATGATTATCGTGAGCCGGTCGCTCGTGGAGCAGCACTACGAGGAGCACTC
TGGGAAGGACTTCTTCGAAAATCTCCTCAACTATATGTCGTTGGGTCCTG
TTGTGGCGATGGTTTGGGAAGGGAAAGGCGTCATCGCTGGAGGTCGAAAG
CAGCTCTTGGGGGCAACGAATCCGCTCAATGCGGAGGTGGGTACGATTCG
AGGGGACCTCTGCATCTGTGCAGGCAAGAACCTTGTCCATGCTTCCGACG
GGCCGGAGTCGGCAAAACGCGAGATCGCCTTGTGGTTTCGGGAGGAGGAG
GTCGTACCCTGGAGTCGAGCCATAGAACCCTGGATCTCGAGAAGTCTCTA
A
back to top