mRNA_A-nodosum_M_contig1053.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1053.43.1
Unique NamemRNA_A-nodosum_M_contig1053.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: D8LTG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTG6_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 2.540e-63
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNAG 368
            Q+DRFMRIKNS WRKPKGIDGRVRRRFKG + MPN+GYGSDKRTRN+LPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAG+LHIRVTNAG
Sbjct:   24 QTDRFMRIKNSSWRKPKGIDGRVRRRFKGCLPMPNVGYGSDKRTRNILPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAG 127
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: A0A835YGQ7_9STRA (Ribosomal protein L32e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGQ7_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.050e-55
Identity = 86/103 (83.50%), Postives = 99/103 (96.12%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            QS+RF+RI+NS WR+PKGIDGRVRR+FKGAI MPNIGYGS+K+TRN+LPNGFYKFLVHNVK+LELL+MHNRKYAAEIAHNVS+RKRKEIVERA +L I+VTNA
Sbjct:   24 QSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNA 126
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: A0A7S2XAB1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAB1_9EUKA)

HSP 1 Score: 168 bits (425), Expect = 1.160e-51
Identity = 82/103 (79.61%), Postives = 93/103 (90.29%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            QSDRF RI +S WR+PKGID RVRR+FKGAI M N+GYGS+K+TRNLLPNGFYKFLVHNVKELELL+MHNRKY AE+AH VSS+KRKEIVERA +L I+VTNA
Sbjct:    8 QSDRFKRIADSSWRRPKGIDSRVRRKFKGAIPMANVGYGSNKKTRNLLPNGFYKFLVHNVKELELLMMHNRKYCAEVAHAVSSKKRKEIVERADQLGIKVTNA 110
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: W7T4V3_9STRA (Ribosomal protein l32 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4V3_9STRA)

HSP 1 Score: 164 bits (414), Expect = 9.390e-50
Identity = 79/103 (76.70%), Postives = 92/103 (89.32%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            Q+DRFMRI  + WRKPKGIDGR RRRFKG+  MPNIGYGSD +TRNLLPNGFYKF+V+N KE+ELLL+HNRKY+AEIAHNVSSRKRK IVE+A +L ++VTNA
Sbjct:   25 QADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNA 127
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: A0A7S2AJK5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJK5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.580e-49
Identity = 81/101 (80.20%), Postives = 87/101 (86.14%), Query Frame = 3 
Query:   60 SDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTN 362
            S+RFMRIKNS WRKPKGID  VRRRFKG I M  IGYGSDKRTRN LPNGF KFLV NV +LELL+MHN+KY AEIAHNVSS+KRKEIVERA  LHI+VTN
Sbjct:   24 SNRFMRIKNSNWRKPKGIDSSVRRRFKGTIPMVKIGYGSDKRTRNTLPNGFLKFLVSNVAQLELLMMHNKKYCAEIAHNVSSKKRKEIVERAQELHIKVTN 124
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: A0A6S9KJY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KJY2_HETAK)

HSP 1 Score: 160 bits (405), Expect = 2.130e-48
Identity = 80/103 (77.67%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            QSD+FMRI  S WRKPKGID RVRRRFKG I MP IGYGS+K+TRN+LPNGF KFLV+NV ELELL+MHNRKY AEIAHNVS++KRK+IV RA +L IRVTNA
Sbjct:   24 QSDQFMRIGKSSWRKPKGIDSRVRRRFKGTIPMPKIGYGSNKKTRNVLPNGFLKFLVNNVAELELLMMHNRKYCAEIAHNVSAKKRKDIVTRAEQLGIRVTNA 126
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: M2W9S0_GALSU (60S ribosomal protein L32 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W9S0_GALSU)

HSP 1 Score: 160 bits (404), Expect = 2.750e-48
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:   39 KEVRSAQSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            K+ +  QSDRF R+K + WRKPKGID RVRRRFKG+  MPNIGYGSDKRTR LLPNGFYKFLV+NVKELE LLM NRKYAAEIAH VS++KRKEI+ERA  L+I+VTNA
Sbjct:   16 KKFKRFQSDRFKRVKEN-WRKPKGIDCRVRRRFKGSTLMPNIGYGSDKRTRYLLPNGFYKFLVNNVKELEALLMLNRKYAAEIAHGVSAKKRKEILERAAELNIKVTNA 123
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: A0A7S2B874_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B874_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.480e-48
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 3 
Query:   60 SDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            S+RFMRI+NS WRKPKGID  VRRRFKG I M  IGYGSDK+TRNL+PNGFYKF V NV +LE+L+MHNRKY AEIAHNVS++KRKEIVERA +L+I+V+NA
Sbjct:   44 SNRFMRIENSSWRKPKGIDSSVRRRFKGTIPMAKIGYGSDKKTRNLMPNGFYKFAVSNVDQLEMLMMHNRKYCAEIAHNVSTKKRKEIVERAAQLNIKVSNA 145
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: M4C135_HYAAE (Uncharacterized protein n=12 Tax=Oomycota TaxID=4762 RepID=M4C135_HYAAE)

HSP 1 Score: 159 bits (402), Expect = 1.330e-47
Identity = 77/102 (75.49%), Postives = 93/102 (91.18%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTN 362
            QS+RF R+  S WR+PKGIDGRVRR+FKGAI MPN+GYGS+K+TR+LLPNGFYKF+V+NV ELE+LLMHNRKY AEIAHNVS RKR+EI+ERA +L++RVTN
Sbjct:   24 QSNRFKRVPES-WRRPKGIDGRVRRKFKGAIKMPNVGYGSNKKTRHLLPNGFYKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTN 124
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BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Match: A0A4P9XXJ7_9FUNG (60S ribosomal protein L32 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XXJ7_9FUNG)

HSP 1 Score: 157 bits (396), Expect = 4.690e-47
Identity = 79/103 (76.70%), Postives = 93/103 (90.29%), Query Frame = 3 
Query:   57 QSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIGYGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGRLHIRVTNA 365
            QSDRF+R+ ++ WRKPKGID RVRRRFKG IAMPNIGYGS+K+TR+L+PNGF KFLV NVKEL+LL+M NR YAAEIAHNVSSRKR +IVERA +L+I+VTNA
Sbjct:   24 QSDRFLRV-DASWRKPKGIDNRVRRRFKGQIAMPNIGYGSNKKTRHLMPNGFKKFLVSNVKELDLLMMQNRTYAAEIAHNVSSRKRIQIVERAAQLNIKVTNA 125
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTG6_ECTSI2.540e-6392.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGQ7_9STRA1.050e-5583.50Ribosomal protein L32e n=1 Tax=Tribonema minus Tax... [more]
A0A7S2XAB1_9EUKA1.160e-5179.61Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
W7T4V3_9STRA9.390e-5076.70Ribosomal protein l32 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S2AJK5_9STRA3.580e-4980.20Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6S9KJY2_HETAK2.130e-4877.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M2W9S0_GALSU2.750e-4876.1560S ribosomal protein L32 n=1 Tax=Galdieria sulphu... [more]
A0A7S2B874_9STRA5.480e-4875.49Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
M4C135_HYAAE1.330e-4775.49Uncharacterized protein n=12 Tax=Oomycota TaxID=47... [more]
A0A4P9XXJ7_9FUNG4.690e-4776.7060S ribosomal protein L32 n=1 Tax=Thamnocephalis s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:268747..269126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTG6
Preferred nameRPL32
PFAMsRibosomal_L32e
Model size380
Max annot lvl2759|Eukaryota
KEGG koko:K02912,ko:K03132,ko:K04805,ko:K06990,ko:K09329,ko:K09503,ko:K17593,ko:K17822
KEGG TC1.A.9.1
KEGG Pathwayko03010,ko03022,ko04080,ko04141,ko04725,map03010,map03022,map04080,map04141,map04725
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001889,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030867,GO:0031090,GO:0031099,GO:0031100,GO:0031960,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048545,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051384,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097327,GO:0097421,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1990904
Exons1
Evalue2.39e-64
EggNOG OGsCOG1717@1|root,KOG0878@2759|Eukaryota
Description60s ribosomal protein
Cds size363
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03000,ko03011,ko03021,ko03029,ko03036,ko03110,ko04040,ko04121,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.5997243-UTR-A-nodosum_M_contig1053:268746..2687631680866435.5997243-UTR-A-nodosum_M_contig1053:268746..268763Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 268747..268763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866435.6099613-CDS-A-nodosum_M_contig1053:268763..2691261680866435.6099613-CDS-A-nodosum_M_contig1053:268763..269126Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1053 268764..269126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.43.1prot_A-nodosum_M_contig1053.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1053 268764..269126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1053.43.1

>prot_A-nodosum_M_contig1053.43.1 ID=prot_A-nodosum_M_contig1053.43.1|Name=mRNA_A-nodosum_M_contig1053.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
MWSGEANKEVRSAQSDRFMRIKNSGWRKPKGIDGRVRRRFKGAIAMPNIG
YGSDKRTRNLLPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRK
EIVERAGRLHIRVTNAGQAQ*
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mRNA from alignment at A-nodosum_M_contig1053:268747..269126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1053.43.1 ID=mRNA_A-nodosum_M_contig1053.43.1|Name=mRNA_A-nodosum_M_contig1053.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=380bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:268747..269126+ (Ascophyllum nodosum dioecious)
CAGCCTATCAACAAGCAATGTGGTCAGGAGAAGCGAACAAAGAAGTTCGC
TCGGCACAGTCGGACCGGTTTATGCGGATTAAGAACTCTGGCTGGAGAAA
GCCCAAGGGTATCGATGGACGAGTTCGCAGGCGCTTCAAGGGGGCCATTG
CCATGCCTAACATCGGATACGGTTCTGACAAGCGCACCCGCAACCTCCTA
CCCAACGGCTTCTACAAGTTCCTGGTCCACAACGTGAAAGAGCTCGAGCT
TCTCCTCATGCACAACAGGAAATACGCGGCAGAGATTGCCCACAACGTGT
CCTCGCGGAAGCGCAAGGAGATCGTGGAACGCGCAGGGCGGCTGCACATT
CGCGTCACAAACGCTGGGCAAGCTCAGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:268747..269126+

>mRNA_A-nodosum_M_contig1053.43.1 ID=mRNA_A-nodosum_M_contig1053.43.1|Name=mRNA_A-nodosum_M_contig1053.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:268747..269126+ (Ascophyllum nodosum dioecious)
ATGTGGTCAGGAGAAGCGAACAAAGAAGTTCGCTCGGCACAGTCGGACCG
GTTTATGCGGATTAAGAACTCTGGCTGGAGAAAGCCCAAGGGTATCGATG
GACGAGTTCGCAGGCGCTTCAAGGGGGCCATTGCCATGCCTAACATCGGA
TACGGTTCTGACAAGCGCACCCGCAACCTCCTACCCAACGGCTTCTACAA
GTTCCTGGTCCACAACGTGAAAGAGCTCGAGCTTCTCCTCATGCACAACA
GGAAATACGCGGCAGAGATTGCCCACAACGTGTCCTCGCGGAAGCGCAAG
GAGATCGTGGAACGCGCAGGGCGGCTGCACATTCGCGTCACAAACGCTGG
GCAAGCTCAGTGA
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