mRNA_A-nodosum_M_contig1053.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1053.25.1
Unique NamemRNA_A-nodosum_M_contig1053.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1053.25.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 4.090e-53
Identity = 130/243 (53.50%), Postives = 152/243 (62.55%), Query Frame = 3 
Query:  522 IDACLRRWKAARHDGQAVLARLSNALLLRTYVDEARGGSVSGNIXXXISGGGAHVWGALASAGTSVSRVALATEARVRRLHGDLSALQDAMVAAAAGVRRHAQEARHQCKPFSAGEDAALDVCAAPSSTPAGGKRGIKAASTTGLTIL-----------------------VGGGYAMEDVANAALEVSEMLLQEALVTATVTRGVGE--CQDDRNALTVYAAAWMMQPYLDARRLRELEVMV 1175
            ID CLRRWKAARH+GQAVL  LSNALLLRTYVD+   G      X   + G   VWGALA AGT+VSRV++ATE R RRLHGDLSALQDAMVAAA  +RRHA+E R +     AG +             +G   G KA                                VGGGYA+ DVA+   +V+EML++EALVTATV +GVG+   +DDR ALTVYAAAWMMQPY+DA RL+ELEVMV
Sbjct:   30 IDGCLRRWKAARHEGQAVLTDLSNALLLRTYVDK---GXXXXXXXRAATDGA--VWGALAGAGTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVSARAGGE---------DHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMV 258
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BLAST of mRNA_A-nodosum_M_contig1053.25.1 vs. uniprot
Match: A0A835ZE08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE08_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.120e-12
Identity = 70/224 (31.25%), Postives = 96/224 (42.86%), Query Frame = 3 
Query:  510 ILAGIDACLRRWKAARHDGQAVLARLSNALLLRTYVDEARGGSVSGNIXXXISGGGAHVWGALASAGTSV-SRVALATEARVRRLHGDLSALQDAMVAAAAGVRRHAQEARHQCKPFSAGEDAALDVCAAPSSTPAGGKRGIKAASTTGLTILVGGGYAMEDVANAALEVSEMLLQEALVTATVTRGVGECQDDRNALTVYAAAWMMQPYLDARRLRELEVMVE 1178
            +L  I+  L RW   + +GQ +L+ LSNA L R++V +                  +  WG LA  GTSV   VAL  EA+V +L  DL  +   +   A  V                     +D  A       GG  G              GGY+  D+A AAL +  ML +E  V   V    G+C   R+ LT+YAAAWMMQPY++    ++L  M E
Sbjct:   12 LLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDT-----------------SSAWGPLA--GTSVPGTVALKLEAKVCKLQLDLQGVVTNLAGCAKSV---------------------IDTAAQLQEQHGGGADGWH-----------NGGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSS-RDTLTLYAAAWMMQPYMERGLWKDLLRMTE 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI4.090e-5353.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZE08_9STRA5.120e-1231.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:191107..193627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2512
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003180.1
Cds size774
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866434.2048151-UTR-A-nodosum_M_contig1053:191106..1915281680866434.2048151-UTR-A-nodosum_M_contig1053:191106..191528Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 191107..191528 +
1680866434.2238398-UTR-A-nodosum_M_contig1053:192302..1935451680866434.2238398-UTR-A-nodosum_M_contig1053:192302..193545Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 192303..193545 +
1680866434.231891-UTR-A-nodosum_M_contig1053:193554..1936271680866434.231891-UTR-A-nodosum_M_contig1053:193554..193627Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 193555..193627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866434.2156425-CDS-A-nodosum_M_contig1053:191528..1923021680866434.2156425-CDS-A-nodosum_M_contig1053:191528..192302Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1053 191529..192302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.25.1prot_A-nodosum_M_contig1053.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1053 191529..192302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1053.25.1

>prot_A-nodosum_M_contig1053.25.1 ID=prot_A-nodosum_M_contig1053.25.1|Name=mRNA_A-nodosum_M_contig1053.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=258bp
MSSLREATDRTADSPGQTAEGDTNDVVGDILAGIDACLRRWKAARHDGQA
VLARLSNALLLRTYVDEARGGSVSGNISGDISGGGAHVWGALASAGTSVS
RVALATEARVRRLHGDLSALQDAMVAAAAGVRRHAQEARHQCKPFSAGED
AALDVCAAPSSTPAGGKRGIKAASTTGLTILVGGGYAMEDVANAALEVSE
MLLQEALVTATVTRGVGECQDDRNALTVYAAAWMMQPYLDARRLRELEVM
VEARRRN*
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mRNA from alignment at A-nodosum_M_contig1053:191107..193627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1053.25.1 ID=mRNA_A-nodosum_M_contig1053.25.1|Name=mRNA_A-nodosum_M_contig1053.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2521bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:191107..193627+ (Ascophyllum nodosum dioecious)
AAAAACGCGAGGTGGCTCGAATCGTGCAATTCTGGCGGGGAGAACATTCG
CCGATATATCTCCCATCAACCATCAAATGGTACATCGTCAAGTGGAAGCG
GGCAAGAAATGCTCGAAAACGGCTTTTGCGTTGTTGCCCCGAGAGAGCGA
GCTTTTTGGTGCCGTGTAACCGACCTGGAGAAAGAACCTGTCTTGCCGCT
CGAGCTAGGCGCGACTGCGCCATCGCTTATGGCCCCAGCTGTGAAGCATT
CGTGATCTGACGCCCCTCTTGACTCGCTACCCGCCCGCCGTCTTGTGATA
CTCTTGTAGGGAACGCATGAAGACCGTGAACACCCTGCAGGAGCCGGTCG
CGACGTTAATTTAGATTAGCAGTATAACAATTATACCCCATCCTTGACGG
GGTGCGGGGGAGGAGGGCGTTGATGAGTTCACTCCGGGAGGCAACCGACC
GGACAGCCGATTCCCCGGGCCAGACTGCGGAAGGAGACACAAACGATGTC
GTCGGCGACATCTTAGCCGGGATAGACGCCTGCCTCCGGCGATGGAAAGC
CGCGCGGCACGACGGCCAAGCCGTCCTGGCGCGGTTGAGCAACGCCCTCT
TGCTCAGAACCTATGTGGATGAGGCAAGAGGCGGCTCAGTCAGCGGAAAT
ATCAGCGGCGATATTAGCGGCGGTGGTGCTCATGTGTGGGGCGCGCTTGC
CTCGGCGGGAACGTCGGTGTCAAGGGTAGCCCTCGCCACGGAAGCGCGCG
TCCGCCGTCTCCACGGTGACCTTAGCGCTCTTCAAGACGCGATGGTCGCC
GCCGCGGCGGGTGTCCGTCGGCACGCCCAGGAAGCGCGGCACCAGTGCAA
ACCTTTCTCTGCTGGTGAGGATGCCGCCCTTGACGTTTGCGCCGCCCCCT
CGAGCACCCCGGCGGGCGGGAAACGTGGCATTAAGGCCGCATCGACGACA
GGCCTTACCATCTTGGTAGGAGGTGGTTACGCGATGGAAGATGTTGCGAA
CGCGGCTTTGGAGGTGTCAGAGATGTTGCTGCAGGAGGCTCTCGTTACCG
CTACCGTAACGCGCGGGGTGGGAGAGTGCCAAGATGACCGAAATGCATTG
ACGGTATACGCCGCGGCATGGATGATGCAGCCATATCTGGACGCCAGGCG
GTTGAGAGAGCTCGAAGTCATGGTTGAGGCAAGGAGGCGGAACTGAAATT
CGAAACGGTCGGCGAGCGTTTTTGTTGTTGTTGCACCGAGGTGAACGCCA
TGGGGATAGCCTGGGTACAACATGTCATCGGTAAAATACTACCACTTCCA
AATGCACGGCAGTTGCGCGCGCCGGAATCTCGCGGGGGGGGGGGGGACAC
TGCTGTAACGGAATGCGTCATCGGACGTGACTAAATCTGAGATCGATGAA
TCATTAGTTGTCGACGTGGTAGGAGTGCTGAACGTGCATCGCGAAGAGAG
AAACGTAAGATCCCTTGTCATCACAGGAATGGATAGCGTTGTGTTTCTGG
TTGGATTGGTAACCTACGACTTTACAAGGTCACATCGGTAGAGGTCGCAT
TGGCAGAAGACGATTAGGACCCCTATACCAATGCCCCTCAAAACATAAAC
TCAAAACACAAAACAAAACTTGACTTTTTTTTACTTTTTTTTCCCCCTAT
TTCTTTCTCTTCTTTTTTTATCTATTATGTTTGCATGTAAATCAGTCCAC
AGAGCAAAGGTGCGGCGGGATTCCCAGCGTTCGTATTTAAAAGTGCGTTA
TATAGTAAGACGAACTCTGTAGGAACGAAGTCCAGGATTCTGGAAATTTG
AAATCGGGCCAATTTCGAATCTCTAGTAGATTTCAGGAATCGGAGGAGGG
CGGCCTAGTTTTGGAAAATGGGCACACACTTTCCAGAGACTATCTGAAAA
CTGGTGTTCGTGTGATATGGTCAGGCTTTTACCTACGTCCATATTTGTGC
CTACTCGTTGTGATGAAGCAAACCTCCAATCAGATCACGCGCCGGCTCGT
ACCAAAGTAGTCCCATCAGCGCGAGTGACTCCGAAGTGATTCTCAAGCTG
CCCGTGAGGAGGTTGCTGATGGAGACGATGGTGCGCTGGCAGCAGAGGTC
GCTGTTGCTGCCACGGTGCTGACCTCCCACCTTGGTACAGACAAGGGCCC
GTAGTTCTAGCTTTCCTCTTGGTAAAGGAAATGTACACCTTTCGACCCAA
AGGGTTTCAATTTGTGTCAGGCGGCGGGAAGATATTTAACCAGTGAGTAG
ACTTGACGTATGTCCGTTTACAATTGCTTATGCGGTTCACAGAGCATCTG
TCAATACTCGTGCAGCAGATGATTGAATCAATATTCGATGGTACTGTTTC
CCAGCCGAGCACTCGATGGTACTGTGCAAGATCGTTAATACGGGAGAGGC
TGCATTTTGAGAATAACCTAATCATCTTTTTTTTTCTGTGCTGAGCAGCG
AGAGGGCAGCACCGGCCCGTCGCTGTCTTTGCCTGGTGTGCGTGTGCGTA
TGGACGCAAACATGTCGGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:191107..193627+

>mRNA_A-nodosum_M_contig1053.25.1 ID=mRNA_A-nodosum_M_contig1053.25.1|Name=mRNA_A-nodosum_M_contig1053.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:191107..193627+ (Ascophyllum nodosum dioecious)
ATGAGTTCACTCCGGGAGGCAACCGACCGGACAGCCGATTCCCCGGGCCA
GACTGCGGAAGGAGACACAAACGATGTCGTCGGCGACATCTTAGCCGGGA
TAGACGCCTGCCTCCGGCGATGGAAAGCCGCGCGGCACGACGGCCAAGCC
GTCCTGGCGCGGTTGAGCAACGCCCTCTTGCTCAGAACCTATGTGGATGA
GGCAAGAGGCGGCTCAGTCAGCGGAAATATCAGCGGCGATATTAGCGGCG
GTGGTGCTCATGTGTGGGGCGCGCTTGCCTCGGCGGGAACGTCGGTGTCA
AGGGTAGCCCTCGCCACGGAAGCGCGCGTCCGCCGTCTCCACGGTGACCT
TAGCGCTCTTCAAGACGCGATGGTCGCCGCCGCGGCGGGTGTCCGTCGGC
ACGCCCAGGAAGCGCGGCACCAGTGCAAACCTTTCTCTGCTGGTGAGGAT
GCCGCCCTTGACGTTTGCGCCGCCCCCTCGAGCACCCCGGCGGGCGGGAA
ACGTGGCATTAAGGCCGCATCGACGACAGGCCTTACCATCTTGGTAGGAG
GTGGTTACGCGATGGAAGATGTTGCGAACGCGGCTTTGGAGGTGTCAGAG
ATGTTGCTGCAGGAGGCTCTCGTTACCGCTACCGTAACGCGCGGGGTGGG
AGAGTGCCAAGATGACCGAAATGCATTGACGGTATACGCCGCGGCATGGA
TGATGCAGCCATATCTGGACGCCAGGCGGTTGAGAGAGCTCGAAGTCATG
GTTGAGGCAAGGAGGCGGAACTGA
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