mRNA_A-nodosum_M_contig105.46.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.46.1
Unique NamemRNA_A-nodosum_M_contig105.46.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Match: D7FQD4_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD4_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.330e-18
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:    3 YEVNQMLAWAATETPAKPEKIQNNAIPSRLPRLVSEAGMSKELFIESMSRRLALVDAAEDVRQMFKAFDRGCRGFITRDDLRMVSNE 263
            ++V QMLA A  E P  P                   GMS+++F+ESM RRLALVD AE++RQ+FKAFDRGCRGFITRDDLR V +E
Sbjct:   47 FDVQQMLALATAEDPQCP-------------------GMSRDMFVESMGRRLALVDPAEELRQIFKAFDRGCRGFITRDDLRQVLSE 114
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BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Match: A0A6H5JF19_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF19_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.710e-18
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3 
Query:  117 MSKELFIESMSRRLALVDAAEDVRQMFKAFDRGCRGFITRDDLRMVSNE 263
            MS+++F+ESM RRLALVD AED+RQ+FKAFDRGCRGFITRDDLR V +E
Sbjct:    1 MSRDMFVESMGRRLALVDPAEDLRQIFKAFDRGCRGFITRDDLRQVLSE 49
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQD4_ECTSI1.330e-1854.02EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JF19_9PHAE5.710e-1877.55EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:562104..562783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQD4
Preferred nameEFCAB11
PFAMsEF-hand_1,EF-hand_7,EF-hand_8
Model size547
Max annot lvl2759|Eukaryota
KEGG koko:K02183,ko:K16465
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0043167,GO:0043169,GO:0046872
Exons2
Evalue1.13e-18
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
DescriptionCalcium-binding protein
Cds size291
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866427.6045892-UTR-A-nodosum_M_contig105:562103..5621201680866427.6045892-UTR-A-nodosum_M_contig105:562103..562120Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 562104..562120 +
1680866427.6400952-UTR-A-nodosum_M_contig105:562544..5627831680866427.6400952-UTR-A-nodosum_M_contig105:562544..562783Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig105 562545..562783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866427.6156518-CDS-A-nodosum_M_contig105:562120..5621601680866427.6156518-CDS-A-nodosum_M_contig105:562120..562160Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 562121..562160 +
1680866427.6301358-CDS-A-nodosum_M_contig105:562293..5625441680866427.6301358-CDS-A-nodosum_M_contig105:562293..562544Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 562294..562544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.46.1prot_A-nodosum_M_contig105.46.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 562121..562544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.46.1

>prot_A-nodosum_M_contig105.46.1 ID=prot_A-nodosum_M_contig105.46.1|Name=mRNA_A-nodosum_M_contig105.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=97bp
MLAWAATETPAKPEKIQNNAIPSRLPRLVSEAGMSKELFIESMSRRLALV
DAAEDVRQMFKAFDRGCRGFITRDDLRMVSNENSYNGLGYLSGRMN*
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mRNA from alignment at A-nodosum_M_contig105:562104..562783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.46.1 ID=mRNA_A-nodosum_M_contig105.46.1|Name=mRNA_A-nodosum_M_contig105.46.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=680bp|location=Sequence derived from alignment at A-nodosum_M_contig105:562104..562783+ (Ascophyllum nodosum dioecious)
AGTATGAAGTGAATCAGATGTTGGCGTGGGCCGCGACAGAAACTCCCGCA
AAACCAGGTGACCATGGCATACCTTGAAGTCGACTGTCGATCAGGTATTA
GTAGTTTCATACCCCGACCGATGATGATGGAGGACTTGTCAGGAGCTCTC
AAAGCTTACTCCACCCCCTGGTCGTGTTATCCACTCGCAGAGAAAATACA
AAACAACGCTATCCCTTCAAGGCTGCCACGTCTTGTCTCGGAAGCAGGGA
TGTCCAAGGAACTCTTCATCGAATCGATGAGCCGCCGTCTTGCCCTTGTG
GACGCTGCCGAAGACGTCCGCCAAATGTTTAAGGCCTTCGACAGAGGATG
TCGAGGCTTCATCACAAGGGATGACCTACGGATGGTATCTAACGAAAACT
CATATAATGGTTTGGGCTACCTCTCGGGACGGATGAATTAGCGGGCCAAA
ATGTTTGAACGACTTGACAGTATCGCTTTAGGCTACCTTGGGGGCCTACA
GTATAAACCTAAAGGACGGTTTATTTTTGGACGAGCGATGGAGCTCTTTG
GTGACTTTCGCGGCACATGTTTGTCGCCATTCATTCCCAACTCCACGGCA
GGTGATCTCGGAAGCGTTCAGCGAGGAAGAAATGCCGTCAGCGAAGGTAG
CGGAGATGTTCGCTGAGGCTGATTGGGACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:562104..562783+

>mRNA_A-nodosum_M_contig105.46.1 ID=mRNA_A-nodosum_M_contig105.46.1|Name=mRNA_A-nodosum_M_contig105.46.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=291bp|location=Sequence derived from alignment at A-nodosum_M_contig105:562104..562783+ (Ascophyllum nodosum dioecious)
ATGTTGGCGTGGGCCGCGACAGAAACTCCCGCAAAACCAGAGAAAATACA
AAACAACGCTATCCCTTCAAGGCTGCCACGTCTTGTCTCGGAAGCAGGGA
TGTCCAAGGAACTCTTCATCGAATCGATGAGCCGCCGTCTTGCCCTTGTG
GACGCTGCCGAAGACGTCCGCCAAATGTTTAAGGCCTTCGACAGAGGATG
TCGAGGCTTCATCACAAGGGATGACCTACGGATGGTATCTAACGAAAACT
CATATAATGGTTTGGGCTACCTCTCGGGACGGATGAATTAG
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