prot_A-nodosum_M_contig105.46.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig105.46.1
Unique Nameprot_A-nodosum_M_contig105.46.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length97
Homology
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BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Match: A0A6H5JF19_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF19_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.300e-19
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:   34 MSKELFIESMSRRLALVDAAEDVRQMFKAFDRGCRGFITRDDLRMVSNE 82
            MS+++F+ESM RRLALVD AED+RQ+FKAFDRGCRGFITRDDLR V +E
Sbjct:    1 MSRDMFVESMGRRLALVDPAEDLRQIFKAFDRGCRGFITRDDLRQVLSE 49
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BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Match: D7FQD4_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.880e-18
Identity = 38/50 (76.00%), Postives = 46/50 (92.00%), Query Frame = 0 
Query:   33 GMSKELFIESMSRRLALVDAAEDVRQMFKAFDRGCRGFITRDDLRMVSNE 82
            GMS+++F+ESM RRLALVD AE++RQ+FKAFDRGCRGFITRDDLR V +E
Sbjct:   65 GMSRDMFVESMGRRLALVDPAEELRQIFKAFDRGCRGFITRDDLRQVLSE 114
[Close]
BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Match: A0A6S7FPC9_PARCT (EF-hand calcium-binding domain-containing 11-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FPC9_PARCT)

HSP 1 Score: 48.5 bits (114), Expect = 8.120e-5
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 0 
Query:   12 KPEKIQNNAIPSRLPRLVSEAGMSKELFIESMSRRLALVDAAEDVRQMFKAFDRGCRGFITRDDLRMV 79
            KP K + N I ++   +    G+S+E F + M  +L+  D  +++RQ+F A D+ CRGFIT +D + +
Sbjct:   45 KPSKYEVNEILAKESNI--STGISREFFTDIMKSKLSSQDPNDEIRQLFIACDKRCRGFITFEDAKSI 110
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.46.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JF19_9PHAE5.300e-1977.55EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FQD4_ECTSI6.880e-1876.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6S7FPC9_PARCT8.120e-535.29EF-hand calcium-binding domain-containing 11-like ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 31..82
e-value: 2.8E-7
score: 32.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 51..86
score: 9.743292
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 33..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:562121..562544 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.46.1mRNA_A-nodosum_M_contig105.46.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig105 562104..562783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig105.46.1 ID=prot_A-nodosum_M_contig105.46.1|Name=mRNA_A-nodosum_M_contig105.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=97bp
MLAWAATETPAKPEKIQNNAIPSRLPRLVSEAGMSKELFIESMSRRLALV
DAAEDVRQMFKAFDRGCRGFITRDDLRMVSNENSYNGLGYLSGRMN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair