mRNA_A-nodosum_M_contig1049.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1049.25.1
Unique NamemRNA_A-nodosum_M_contig1049.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: D8LB24_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB24_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 1.740e-161
Identity = 272/408 (66.67%), Postives = 297/408 (72.79%), Query Frame = 1
Query:    7 VVDSRLLAASCFAGLSSIWRHSAKIGRDGFLMNNFPIQGVSMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLDLNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVGFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFPCQETVGT--SPGQSLGGPGESGSLRGSAAEASAIG-GGKQPGFLRRFLSSLLTCSCL---RRKTEDVTDSLG--------TSSE--------SVVEAGEGVGSGSGASWQRGAPFEGEAVVV-PEAVSGARGGGKTGARRWRGGRLSGQTAIRRNGRPVLGWTRVR 1161
            +V + LL ASCFAGLSSIWRHSAKI RDGFL ++F +QG+S +MAVRQVPGDGNCLFHAIS CLDHACNGTHPSLDL+ELMPKSA+LRK      VAVDYLVDNLK +LYLEKEESVPVYELLSVVAAQYNMTAEHYCE                  VMRQSSVWGGGPEIVALSNALCRPIHVYELASNGV FCFRRMACFGSP+FDD+QAIHILSADSRFPNLKPG+QL NGNHFLALFPC ETV +  + G  +GG G S SLRGSAAEASAIG GGK+PG  RRFLSSLLTCSCL   R   ED   + G        TS+         ++   G GVG  SG  WQ+G P     V +  E VSGARGGG T ARR    + SG  A        +GWTR R
Sbjct:    7 LVSALLLPASCFAGLSSIWRHSAKIKRDGFLTDSFAVQGISTNMAVRQVPGDGNCLFHAISACLDHACNGTHPSLDLSELMPKSAALRK------VAVDYLVDNLKKTLYLEKEESVPVYELLSVVAAQYNMTAEHYCE------------------VMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAGVGVGGGGAS-SLRGSAAEASAIGVGGKKPGKFRRFLSSLLTCSCLSSRRAVREDDEPAAGDVTTITDPTSAHKGAAHPQGAMETGGGGVGGASG--WQQGTPAPDVVVGLGSETVSGARGGGGTHARRGWPQQQSGLAAHNAKKGRGVGWTRTR 387          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: A0A835YZQ7_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ7_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.320e-86
Identity = 144/233 (61.80%), Postives = 168/233 (72.10%), Query Frame = 1
Query:   43 AGLSSIWRHSAKIGRDGFLMNNFPIQGVSMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLDLNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELASN-GVGFCFRRMACFGSPNFDDR-QAIHILSADSRFPNLKPGKQLTNGNHFLALFPC 735
            AGL+++WRHSA+I RDGFL   FP++G+ + M VRQVPGDGNCLFH+IS CL+HA   +HPSL LN+L+PKSA LRK      +AVDYLV +    LYLE  E+VPV ELL+VVA QYNMT + YC+                   MR  +VWGGGPEIVALSN L RPIHVYELA+  G  FCFRRMACFGSP FD   + IHILSAD+RFPNL PG+QL NGNHFL LFPC
Sbjct:   21 AGLNAMWRHSAQIQRDGFLTEAFPVEGLPVQMQVRQVPGDGNCLFHSISACLEHADTSSHPSLHLNDLLPKSAVLRK------MAVDYLVADPDRVLYLEGGETVPVNELLTVVATQYNMTVDAYCKH------------------MRLPAVWGGGPEIVALSNCLRRPIHVYELAAGAGRRFCFRRMACFGSPLFDGECEPIHILSADARFPNLAPGQQLANGNHFLCLFPC 229          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: A0A7S3L1U5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1U5_9STRA)

HSP 1 Score: 197 bits (501), Expect = 4.070e-57
Identity = 119/250 (47.60%), Postives = 143/250 (57.20%), Query Frame = 1
Query:   61 WRHSAKIGRDGFLMNNF--------------PIQGVSMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLD--LNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELA--------SNGVGFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFPCQ 738
            W  S  I  DGFL + F                Q +     +RQVPGDGNCLFH+IS+CL HA NGTH  +   L +L   S +LR      Q AVD L    K  L+L+  E++   EL+   A QY +T+E YC+A                  M Q  VWGGGPEIVALSN L RPIHVYELA        S+G  F  RRMACFGSP FD R+A+HILSADSRFP+L PG+QL+ GNHFLA+FP +
Sbjct:   18 WNTSPHIRYDGFLRDEFRRIPGEWEEEVRLRTRQRLETKCRIRQVPGDGNCLFHSISLCLQHATNGTHWDVSKCLEDLYTHSQTLR------QQAVDCLRQPHK-RLFLQGRETLKSGELVQAAAQQYGLTSEEYCQA------------------MEQDCVWGGGPEIVALSNLLQRPIHVYELATSSSSSKPSSGNTFVLRRMACFGSPRFDRREALHILSADSRFPDLLPGEQLSAGNHFLAVFPLR 242          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: B7G567_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G567_PHATC)

HSP 1 Score: 196 bits (497), Expect = 8.690e-56
Identity = 106/219 (48.40%), Postives = 133/219 (60.73%), Query Frame = 1
Query:  121 GVSMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLDLNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGV----------GFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFPCQETV 747
            G      +RQVPGDGNCLFH+IS+CL +A NGTH  L+ ++     A    ++T  + AV+ L  + +  L+L+  ES+  +EL+   A QYN++ E YC                  A M+Q SVWGGGPEIVAL N L RPIHVYELAS              F  RRMACFGSP FD RQ +HILSADSRFP++ PG+QL +GNHFLALFP +  V
Sbjct:   86 GTDFPCQIRQVPGDGNCLFHSISLCLQYAANGTHWDLNTSDRRGLDALYEHSQTLRRKAVEVLQHSQR-RLFLQGRESLRAHELVQAAAQQYNLSPEEYC------------------ASMQQDSVWGGGPEIVALCNVLQRPIHVYELASTTTRSSRNDDERQSFVLRRMACFGSPKFDRRQPLHILSADSRFPDVTPGQQLASGNHFLALFPHERKV 285          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: A0A1Z5JTL4_FISSO (OTU domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTL4_FISSO)

HSP 1 Score: 190 bits (482), Expect = 8.420e-54
Identity = 114/252 (45.24%), Postives = 143/252 (56.75%), Query Frame = 1
Query:   61 WRHSAKIGRDGFLMN-----------NFPIQGV---SMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLD--LNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVG------------FCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFP 732
            W  SA I   GFL              FP++ V   +    +RQVPGDGNCLFH++S+CL HA NGTH  +   L+EL   S SLR        AV  L  N K  L+L+ +ES+   EL++  A QY++T E YC                  A M +  VWGGGPEIVALSN L RPIHVYELA    G            F  +RMACFGSP FD ++A+HILSADSRFP+++PG+Q+  GNHFL++FP
Sbjct:   49 WNPSALIDEKGFLKGLFRRKKGDWEEEFPMRTVYHTNHPCQIRQVPGDGNCLFHSLSLCLQHAVNGTHWDMPNRLDELYEHSRSLRAK------AVACLRQN-KRKLFLQGKESMRAIELVTSAAQQYDLTPEEYC------------------ATMEEDCVWGGGPEIVALSNILQRPIHVYELAMESPGAEDATDQPKKPTFILKRMACFGSPRFDGKRALHILSADSRFPDIQPGEQMVAGNHFLSVFP 275          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: A0A7S1V4T9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4T9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 5.810e-52
Identity = 104/201 (51.74%), Postives = 125/201 (62.19%), Query Frame = 1
Query:  142 VRQVPGDGNCLFHAISVCLDHACNGTH-PSLDLNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELAS---NGVGFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFP 732
            VRQVPGDGNCLFHA+SVCL  + +G H P  DL +L   S SLR      Q AVDY+    +  L+L+  E +   +L+   AAQY +T + Y E                   MRQ S WGGGPEIVALSN L RPIHVYEL +   N   F  RRM CFGSP FD ++A+HILSADSRFP+++PGKQ   GNHFLA+FP
Sbjct:    1 VRQVPGDGNCLFHALSVCLYKSEHGCHFPFGDLGKLQQCSKSLR------QRAVDYVKKKPRRLLFLQAREFLRAKDLIDSSAAQYGVTGDEYLET------------------MRQDSTWGGGPEIVALSNMLRRPIHVYELYAPNRNVQDFRLRRMCCFGSPKFDRQEALHILSADSRFPDVQPGKQKKEGNHFLAIFP 177          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: A0A7S2PB71_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB71_9STRA)

HSP 1 Score: 176 bits (447), Expect = 7.980e-48
Identity = 105/220 (47.73%), Postives = 129/220 (58.64%), Query Frame = 1
Query:  142 VRQVPGDGNCLFHAISVCLDHACNGTHPSLDL----NELMPKSASLRKARTGPQVAVDYLVDNL-KGS--LYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELA--------SNGVGFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFPCQETVGTS 756
            VRQVPGDGNCLFH++S+CL +A   +H  L +     EL  +S  LR        AV  L  +  KG   L+++ +E +   ELLS  A+QYN++ E YCEA                  M Q   WGGGPEIVAL NAL RPIHVYEL+        SN   F   RMACFGSP FD R+ +HILSADSRFP++ PG+Q  +GNHFLALFP +    TS
Sbjct:  141 VRQVPGDGNCLFHSLSLCLHYAERQSHFPLKVPESFRELFRRSKKLRNT------AVQILQQSTEKGDKLLFMQGQEFLTCSELLSAAASQYNISPEEYCEA------------------MLQDCTWGGGPEIVALVNALRRPIHVYELSVHEELPNGSNSKEFHLSRMACFGSPKFDKREPLHILSADSRFPDITPGRQKKSGNHFLALFPVRSATFTS 336          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: B8C8S4_THAPS (OTU domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8S4_THAPS)

HSP 1 Score: 177 bits (449), Expect = 2.060e-47
Identity = 110/282 (39.01%), Postives = 144/282 (51.06%), Query Frame = 1
Query:   10 VDSRLLAASCFAGLSSIWRHSAKI-GRDGFLMNNFPIQGVSMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLD----LNELMPKSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELASN------------------------GVGFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFPCQETVGTSPGQS 768
            ++S    +  +  L   W   A I G+ G     +P   V + + +RQVPGDGNCLFH+I+VCL    NGTH S+D    +++L  +S  LR        AVD L +  +  L+L+ EE +   ELL   AAQ+ +  E YCE                  +MR+ S WGGGPEIVAL N L RPIH+YEL                              F  RRMACFGSP +D R+ +HILSADSRFP+++P K    GNHFLALFP   +     G+S
Sbjct:  103 INSSGFLSHLYPRLPGEWEPLANIRGKHGPRSRTYPKSLVDIPVEIRQVPGDGNCLFHSIAVCLYKVVNGTHISMDSPRSIHQLRCQSLHLRNC------AVDVLQNVPRKRLFLQGEEYLEANELLGAAAAQFELDGEEYCE------------------LMRKESYWGGGPEIVALCNYLQRPIHIYELIPTQQKTTDXXXXXXXXXSQPEHAQPTSTQFTLRRMACFGSPKYDRREPLHILSADSRFPDIEPRKIRKVGNHFLALFPVTTSAAKLIGES 360          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: A0A6U9WPR4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9WPR4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.920e-47
Identity = 110/266 (41.35%), Postives = 136/266 (51.13%), Query Frame = 1
Query:   49 LSSIWRHSAKIGR-DGFLMNNFPIQGVSMDMAVRQVPGDGNCLFHAISVCLDHACNGTHPSLDLNELMP----KSASLRKARTGPQVAVDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELA---------------------------------SNGVGFCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFP 732
            +S  W    K+ + D   ++N P         +RQVPGDGNCLFH+ISV   HA NGTH  +   + M      SA+LR      Q+AVD L +  K  L+L+  E +   +L+   AAQY +T   YC+                  +MRQ S WGGGPEIVAL N L RPIHVYEL                                  S    F  RRMACFGSP FD   A+HILSADSRFP+L+PG+QL +GNHFLA+FP
Sbjct:   76 VSGEWEKEVKLRKKDRISLHNSPAM-------IRQVPGDGNCLFHSISVAWAHATNGTHLEMKSPDTMEWLYRTSANLR------QLAVDCLEERRK-LLFLQGHEHLKATDLVEAAAAQYGITGSEYCD------------------LMRQESYWGGGPEIVALCNVLQRPIHVYELHVPEDDNDDDKQRHSRKGKMRSYYRKGYSLSSADSPHSSFVLRRMACFGSPKFDRSPALHILSADSRFPDLRPGEQLESGNHFLAIFP 309          
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Match: K0SP19_THAOC (OTU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SP19_THAOC)

HSP 1 Score: 156 bits (395), Expect = 3.840e-40
Identity = 97/228 (42.54%), Postives = 127/228 (55.70%), Query Frame = 1
Query:  142 VRQVPGDGNCLFHAISVCLDHACNGTHPSLDLNE----LMPKSASLRKAR--------TGPQVA-VDYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAALGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYEL------ASNGVG------------FCFRRMACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFP 732
            +RQVPGDGNCLFH+I+VCL  A NGT   +D +E    L  +S +LR A         T P V  +D +    +  L+L+ +E +  +ELL+  AAQ+++  E YC                   +MR+ S WGGGPEIVAL N L RPIH+YEL      AS+               F  RRMACFGSP FD ++ +HILSADSRFP+++  +    GNHFLAL P
Sbjct:  139 IRQVPGDGNCLFHSIAVCLYRAVNGTDIPMDSHECIGRLRDQSLALRNAAVDVLQQQPTKPGVQFIDSIGPKTRRVLFLQGDEYLEAHELLNAAAAQFDLDGEEYCN------------------LMRKESYWGGGPEIVALCNYLQRPIHIYELIPSDEKASSRASQEKYKKLKVSNQFSLRRMACFGSPKFDRKEPLHILSADSRFPDVEARRM---GNHFLALHP 345          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1049.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB24_ECTSI1.740e-16166.67OTU domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YZQ7_9STRA1.320e-8661.80OTU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3L1U5_9STRA4.070e-5747.60Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G567_PHATC8.690e-5648.40Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JTL4_FISSO8.420e-5445.24OTU domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S1V4T9_9STRA5.810e-5251.74Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2PB71_9STRA7.980e-4847.73Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8C8S4_THAPS2.060e-4739.01OTU domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A6U9WPR4_9STRA9.920e-4741.35Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
K0SP19_THAOC3.840e-4042.54OTU domain-containing protein n=1 Tax=Thalassiosir... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1049contigA-nodosum_M_contig1049:235822..240342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB24
PFAMsOTU
Model size1164
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.86e-162
EggNOG OGs2BVCW@1|root,2S253@2759|Eukaryota
DescriptionOTU-like cysteine protease
Cds size1164
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1049.25.1prot_A-nodosum_M_contig1049.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1049 235822..240342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866424.516414-CDS-A-nodosum_M_contig1049:235821..2359711680866424.516414-CDS-A-nodosum_M_contig1049:235821..235971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 235822..235971 +
1680866424.5278301-CDS-A-nodosum_M_contig1049:236453..2365891680866424.5278301-CDS-A-nodosum_M_contig1049:236453..236589Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 236454..236589 +
1680866424.5373583-CDS-A-nodosum_M_contig1049:237824..2380151680866424.5373583-CDS-A-nodosum_M_contig1049:237824..238015Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 237825..238015 +
1680866424.547074-CDS-A-nodosum_M_contig1049:238512..2386191680866424.547074-CDS-A-nodosum_M_contig1049:238512..238619Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 238513..238619 +
1680866424.5569925-CDS-A-nodosum_M_contig1049:239122..2392061680866424.5569925-CDS-A-nodosum_M_contig1049:239122..239206Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 239123..239206 +
1680866424.5660706-CDS-A-nodosum_M_contig1049:239846..2403421680866424.5660706-CDS-A-nodosum_M_contig1049:239846..240342Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1049 239847..240342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1049.25.1

>prot_A-nodosum_M_contig1049.25.1 ID=prot_A-nodosum_M_contig1049.25.1|Name=mRNA_A-nodosum_M_contig1049.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=388bp
MRVVDSRLLAASCFAGLSSIWRHSAKIGRDGFLMNNFPIQGVSMDMAVRQ
VPGDGNCLFHAISVCLDHACNGTHPSLDLNELMPKSASLRKARTGPQVAV
DYLVDNLKGSLYLEKEESVPVYELLSVVAAQYNMTAEHYCEASDAMDWAA
LGNRGSPGAVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVGFCFRR
MACFGSPNFDDRQAIHILSADSRFPNLKPGKQLTNGNHFLALFPCQETVG
TSPGQSLGGPGESGSLRGSAAEASAIGGGKQPGFLRRFLSSLLTCSCLRR
KTEDVTDSLGTSSESVVEAGEGVGSGSGASWQRGAPFEGEAVVVPEAVSG
ARGGGKTGARRWRGGRLSGQTAIRRNGRPVLGWTRVR*
back to top

mRNA from alignment at A-nodosum_M_contig1049:235822..240342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1049.25.1 ID=mRNA_A-nodosum_M_contig1049.25.1|Name=mRNA_A-nodosum_M_contig1049.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4521bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:235822..240342+ (Ascophyllum nodosum dioecious)
ATGCGTGTGGTCGATTCGCGCTTGCTCGCAGCGAGCTGCTTTGCCGGACT TTCGTCGATATGGAGGCACTCCGCCAAGATCGGGAGGGATGGGTTCTTGA TGAATAACTTTCCCATCCAAGGGGTATCCATGGACATGGCGGTTCGACAG GTGAATACGACATGCAGCTTCCGCTGCTACATATCTAATGTAGCGGTTTT GTAGTGTTCAGGGTGGAGAAGAAGGTTCAAAGGACGATGATGGCCTCCCG CTTGGCTCTCCGCCCAGACCAAAAACTTGAGCGTGTTTTGAGATACGCTC GAGAAAAAAAGGGAACCCAGAAAGTAGAAGCGTAGATCTTGAGGCGTGAG TATCTGTTTTGGGCCTAGAGGTTGCAAATCCTCACCCTGCAATGAATTTC ACTTGTTGCCCTCAGTTGCGAAGCCGAAGCTCCCCTGTTTTCGAGTTACG TGCCCGTGCCAAGCATCAAGCTCGACGTCTGATATGCGAGAGGAAAAACC TGCACCTGCCGAAGGGACACAATGATGATAGCGTGTGCTGTTCATGGCTC TATTGCTCTCGAGCCGTGAAGCATCGGTTACAATATCCATGTTATTGAAA CTTATGACCTAATGCATTCTGTGTCCCGCCAGGTTCCCGGCGACGGTAAC TGCCTGTTCCATGCGATATCGGTGTGCCTCGACCATGCTTGCAACGGCAC CCACCCCAGCCTCGACTTGAACGAGCTCATGCCCAAGTCTGCCTCCCTTC GAAAGGCAAGAACAGGACGTCTCTTCATTTGATTCCATCCAATCCAATTC AATCCAATCCCTTATACCTTGACATGTCATCCTTTTGTTATATGGTCATC ACATAGAGCAAGAGAAGGATCAACCGGGTAAGGTCGCCAACCCTGCTCGT GGTCAGCTGAACAGGGAAAATGAATATTTCCCTGTCCCTGTTCGCGCCTG AGAATTTGGTCTCGCGAGACGGGTTCGGTAGTCCCGTCCCGCGTCAGCCT GCTCATCTCTATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTC CCGAGTTCCGCGGTGGCGTCCATTTATTAATTTAAACCGCCATACGCCAT CGTCAATCCCGAGTTCACGGGCCATCCACCCCGTGTGCACGGTTGTGAAG AGTGAAGAGCGAAGCGCGAATGGACGAGCCCTCAAACGGAGAGTTTGGAA AATCGCTTTTTCGGTTTTCGTTTACTGCCTTCCTTCTATGTTCCCTGTGA AAGGTTCGTGGTCGGTGCATCCTTTAGATTAAATAGGTATTCAAGTGTTA CTCTATTGTATAGCCTGAAGTGTAAAGCTAGAGGATGATAGGATGATGGA TGTTACTTTGAAGGGTGGCGTGTCTACAGATTCGAAGCGCTTCTTCTATG TTTGCCTTTCTAACTAAGAGTGCGCTCAAGGGGGCTTGATGCCTTGGGTC AACAGCAGATGCGTGTGGCTCGTCCAAGGCCCGGGTCACCCCTTGTATGC CATCAGGTTTCATTGTTCAAAACACAACACATACTCACATTTTGCACGTT TCATTAAACGTCAAAACGGGGGTCGTGTTGTAAATGACCCTGCTCGCCCG GATCTTTCGTCCCACCCACACCAGCGTGTCGCACTCTCTTACGAATGGGG GTTAGGGAGCCGCTGATCCTGCCCATCGGTTCGTGCATTTCGACCTTTCA TCAGTTGTTTGACTGTTCAATTGGCCCGGCACAGCGCAGGTGGCGGTGCC CGGGTCACCCCTTGTATGCCATCAGGTTTCATTGTTCAAAACACAACACA TACTCACATTTTGCACGTTTCATTAAACGTCAAAACGGGGGTCGTGTTGT AAATGACCCTGCTCTCCCGGATCTTTCGTCCCACCCACACCAGCGTGTCG CACTCTCGTACGAATGGGGGTTAGGGAGCCGCTGATCCTGCCCATCAGTT CGTGCATTTCGACCTTTCATCAGTTGTTTGACTGTTCAATTGGCCCGGCA CAGCGCAGGTGGCGGTGGATTATTTGGTGGATAACTTGAAGGGATCCCTT TATCTGGAGAAGGAGGAAAGCGTGCCGGTGTACGAACTTCTGAGCGTCGT GGCGGCGCAGTATAACATGACCGCTGAGCACTACTGCGAGGCAAGCGACG CGATGGACTGGGCAGCCCTTGGGAACCGGGGTAGTCCCGGGGCTGTGCTT GTGTTTGTGTGTGTAATCGGGGTTTTTTTTTGCGATGCTGTACACGGCGT GGTGTGCTGGCGTTGCACGTTTGACGGTGTTTTGATGTGGTATCGCTCCA ATTGTACGAGTACCTTTTGAAAATGAAATTCTAGGATAGGCGGAGGTCGC GGACGACGGCATCCCTCTGGAGGTCATTTTCGACTTTGACTTGCACCATT TCGAGGACATTTCCCGCTCCTCTGAAGGGCACGTCTTTCTTGGATGCCGG ACTTGCACCGAATTCTCATCTCTGCCTTCCGTGCACCCCGATTCTTCAAT CAAGGGTTTTACGAGCTTGCACTAAATTTTCTGACGTGGTTTTAACGGCA AGATGTGCACACCTTGCCTTCGTCCTTTCACGCGGATAGTAACTACAGTT GGCACCCTTGATCGGTCAAAGGGCTTAGGATGGGGTTGCTACTCGAAACC GCAAGCCACTATTTTATTGCCGTCCAACGCTACTGCACCAGGTCATGCGG CAGTCTAGCGTCTGGGGGGGCGGACCGGAGATCGTGGCTCTTTCCAACGC TCTTTGCAGACCAATCCACGTCTACGAACTCGCCTCCAACGGTGTGGGGT GAGAGCCTTCTGGCGGGTGAATGGTGCTCCCTCCAGGCCGATGCCGTACG TCGTACCTCCTGGTAGATGGAGCACGTAGATGGTCTAATTTTTCTGTAAT CCTGGAAAGCTCCGCCGTCTTGGTCGGTTTGTTCTACCGGTAGATTAGTC CGTTCGGCCGGTCCATTCGGCTAGCCTGTTCGGCCGGTCCATTCGGTTAG CCCGCTCGGCCGGTCCATTCGGTTAGCCCGTTCGGCCGGTCCATCAGGTT GGCCAATTGGCATATAAGGTTAGTCGGTCGGTCGGTCGGTCGGTTCATCT ACCGGTCGATTGTCGCACCTTGAAGGCACTCTCCTACGCTTTTCTTAATG CTGTTTCTGAGATTACTGAGGTTGGCTTCGCCCGACTAGAAGCGACGCCT CAAAATCCGTCGTCCGTCTTATCTTGATCGATCCACGGGCAGCCAAACCG CATAATATTTCTCTCCTCCTCCCACGCACGGTTGTCGTCTGTTCGTTGCA GCTTCTGCTTCCGGAGGATGGCGTGCTTTGGCTCCCCGAATTTCGACGAC AGACAAGCCATACACATTCTCTCGGCCGACTCTAGGTACTGTTGTAAAGC TCTAATGTCAAAAAGAGTAAAAAAAAGAAAAGAAAACAAGCGACGAAACT GAGACGTGATTTTGTGTACTGCATTTGACTGTGCGTGACCCGTGTTGTAC TATTCACGAGAGGAACACATACCGTGCGATCATGGAGTCGTGATGTTGGT TGTGCGTGGAAGGCCTTTGAACGATACGATACCCTATTATATTACTGTAC TGATGTGTTAATATCTTTTTCCGAACGACAGAAGCGTATAAACTCAACCT CGGGTGAAATGCGATAGCTGCGGACCACATGATACCCTATTCTAGTACGG TAATGTTGTGTAATAGTTTTTTGCGAACGACAGAAGCCCTGAATGCGACC AACCTGGTGAAGTGCTCTCGCTGTGGATCACGTATCTGACTTTCCAAATC ACTCGAACAAAAACTTTTGTGACACCGCAAACTGCCCAGTGTGAGCGTTT GTGCTCTCGCCTCGATGGAAAGTTCTGAGTCAAGCCAACGATGTACATCA TCATGCGGCTGACACCCGAATCAATATATTCCGATTTTTTTCCCCTCCAG CGATACAGCAGTACAATAAGTGACCTCTGACCCTTGTTGTGCCTTCTTTA CCCGACCCCGACCCCTTCTTACAAGGTTCCCGAACCTCAAGCCCGGAAAG CAGCTGACAAATGGCAACCACTTCCTAGCCCTTTTCCCTTGCCAAGAGAC CGTAGGGACTTCCCCGGGCCAAAGCCTTGGGGGGCCGGGGGAAAGCGGCA GTCTGCGCGGCAGCGCGGCGGAGGCGTCGGCGATCGGGGGGGGGAAACAG CCGGGGTTCTTACGCCGATTTTTGTCCAGCCTGCTAACTTGCTCTTGTCT CCGACGGAAAACCGAAGACGTTACGGACAGCTTGGGCACTTCTTCCGAGA GCGTTGTGGAGGCGGGGGAAGGTGTCGGAAGCGGCAGTGGAGCCAGCTGG CAAAGAGGCGCACCGTTTGAAGGAGAGGCGGTGGTTGTCCCGGAGGCTGT GTCTGGCGCGAGGGGAGGGGGTAAGACGGGGGCGAGAAGGTGGCGGGGGG GTCGACTCTCGGGTCAGACCGCCATCCGGAGGAACGGAAGACCTGTTTTG GGATGGACGCGGGTGCGATGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1049:235822..240342+

>mRNA_A-nodosum_M_contig1049.25.1 ID=mRNA_A-nodosum_M_contig1049.25.1|Name=mRNA_A-nodosum_M_contig1049.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at A-nodosum_M_contig1049:235822..240342+ (Ascophyllum nodosum dioecious)
ATGCGTGTGGTCGATTCGCGCTTGCTCGCAGCGAGCTGCTTTGCCGGACT
TTCGTCGATATGGAGGCACTCCGCCAAGATCGGGAGGGATGGGTTCTTGA
TGAATAACTTTCCCATCCAAGGGGTATCCATGGACATGGCGGTTCGACAG
GTTCCCGGCGACGGTAACTGCCTGTTCCATGCGATATCGGTGTGCCTCGA
CCATGCTTGCAACGGCACCCACCCCAGCCTCGACTTGAACGAGCTCATGC
CCAAGTCTGCCTCCCTTCGAAAGGCAAGAACAGGACCGCAGGTGGCGGTG
GATTATTTGGTGGATAACTTGAAGGGATCCCTTTATCTGGAGAAGGAGGA
AAGCGTGCCGGTGTACGAACTTCTGAGCGTCGTGGCGGCGCAGTATAACA
TGACCGCTGAGCACTACTGCGAGGCAAGCGACGCGATGGACTGGGCAGCC
CTTGGGAACCGGGGTAGTCCCGGGGCTGTCATGCGGCAGTCTAGCGTCTG
GGGGGGCGGACCGGAGATCGTGGCTCTTTCCAACGCTCTTTGCAGACCAA
TCCACGTCTACGAACTCGCCTCCAACGGTGTGGGCTTCTGCTTCCGGAGG
ATGGCGTGCTTTGGCTCCCCGAATTTCGACGACAGACAAGCCATACACAT
TCTCTCGGCCGACTCTAGGTTCCCGAACCTCAAGCCCGGAAAGCAGCTGA
CAAATGGCAACCACTTCCTAGCCCTTTTCCCTTGCCAAGAGACCGTAGGG
ACTTCCCCGGGCCAAAGCCTTGGGGGGCCGGGGGAAAGCGGCAGTCTGCG
CGGCAGCGCGGCGGAGGCGTCGGCGATCGGGGGGGGGAAACAGCCGGGGT
TCTTACGCCGATTTTTGTCCAGCCTGCTAACTTGCTCTTGTCTCCGACGG
AAAACCGAAGACGTTACGGACAGCTTGGGCACTTCTTCCGAGAGCGTTGT
GGAGGCGGGGGAAGGTGTCGGAAGCGGCAGTGGAGCCAGCTGGCAAAGAG
GCGCACCGTTTGAAGGAGAGGCGGTGGTTGTCCCGGAGGCTGTGTCTGGC
GCGAGGGGAGGGGGTAAGACGGGGGCGAGAAGGTGGCGGGGGGGTCGACT
CTCGGGTCAGACCGCCATCCGGAGGAACGGAAGACCTGTTTTGGGATGGA
CGCGGGTGCGATGA
back to top