mRNA_A-nodosum_M_contig1047.22.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.22.3
Unique NamemRNA_A-nodosum_M_contig1047.22.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1047.22.3 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.120e-23
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 3 
Query:    3 VGMATLDEPTLAAALRKTVEGGSRLENVWNLQMAAEISAKPELATMPGMRKIARQLGFSTGGGDQEAGGDTRERESESGDDDGQPDAGSIARQ 281
            VGM TLDEP LAA L KTVE G RLE +WN  M+A ISA PELATMPGM+K+ARQLGF TG  +++  G    +ES+  DD GQPD  SIARQ
Sbjct:  325 VGMETLDEPKLAAELSKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGAAEEDDVG-RGGQESDEDDDYGQPDTASIARQ 416
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BLAST of mRNA_A-nodosum_M_contig1047.22.3 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.120e-22
Identity = 60/96 (62.50%), Postives = 69/96 (71.88%), Query Frame = 3 
Query:    3 VGMATLDEPTLAAALRKTVEGGSRLENVWNLQMAAEISAKPELATMPGMRKIARQLGFSTGGGDQE---AGGDTRERESESGDDDGQPDAGSIARQ 281
            VGM TLDEP LAA L KTVE G RLE +WN  M+A ISA PELATMPGM+K+ARQLGF TG  +++    GG    +ES+  DD GQPD  SIARQ
Sbjct: 1796 VGMETLDEPKLAAELGKTVEDGKRLEALWNKHMSAAISASPELATMPGMQKLARQLGFDTGTAEEDDIGRGG----QESDEDDDYGQPDTASIARQ 1887
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.22.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE3.120e-2363.44Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI1.120e-2262.50Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:145935..147134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size281
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.79e-22
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size273
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.02179-UTR-A-nodosum_M_contig1047:145934..1459421680866423.02179-UTR-A-nodosum_M_contig1047:145934..145942Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 145935..145942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.037739-CDS-A-nodosum_M_contig1047:145942..1460971680866423.037739-CDS-A-nodosum_M_contig1047:145942..146097Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 145943..146097 +
1680866423.049953-CDS-A-nodosum_M_contig1047:147016..1471341680866423.049953-CDS-A-nodosum_M_contig1047:147016..147134Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 147017..147134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.22.3prot_A-nodosum_M_contig1047.22.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 145943..147134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.22.3

>prot_A-nodosum_M_contig1047.22.3 ID=prot_A-nodosum_M_contig1047.22.3|Name=mRNA_A-nodosum_M_contig1047.22.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
MATLDEPTLAAALRKTVEGGSRLENVWNLQMAAEISAKPELATMPGMRKI
ARQLGFSTGGGDQEAGGDTRERESESGDDDGQPDAGSIARQ
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mRNA from alignment at A-nodosum_M_contig1047:145935..147134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.22.3 ID=mRNA_A-nodosum_M_contig1047.22.3|Name=mRNA_A-nodosum_M_contig1047.22.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1200bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:145935..147134+ (Ascophyllum nodosum dioecious)
AGGTGGGTATGGCTACGCTCGACGAGCCCACTCTTGCAGCGGCTTTGAGA
AAAACGGTGGAAGGTGGAAGTCGCCTGGAGAATGTATGGAACCTGCAGAT
GGCGGCTGAAATTAGCGCGAAACCCGAACTGGCGACTATGCCGGGGATGC
GGAAGATCGCAAGGTTTGGTGGACCTGAAGCCCGCATGAGGCGTGCACTA
GTAGGGTTCGGTCCACCATACCTTGCGATCTTCCGCATCCCCGGCATGGT
CGCCAGTTCGGGTTTCGCGCTAATTTCAGCCGCCATCTGCGTGATCCATA
CGTTCTCCAGGCGACTTCCGTCTTCCACCGTTTTTCTCAAAGCCGCTGCA
AGAGTGGGTTCGTCGAGCGTAGCCATACCCACCTGAGCATCGCCGGAAGC
GACAAGGACGAGACGCTGAGTCACCACCACCGTCTGTGGCCGCTGCACCT
CAAATATATTAAAAAAAGGCGGACAAGCTATTCTCAAATGGTCTCTGAAT
AACACACAAGGACGTTTAAAGTCTGTAGATGGTCAATACGTTAGAGGGTA
ACACTTCCGAGGGCACTTACAAAATATATGGAAACACTTGTGCTTGCAAG
ACATCCTAAAATGGGGAGTATATAAAGCAAGACGGTGCACGAGAGAGACT
TACAACCTCGTGCAGTGCAGGCACCCAGTCAAGCACCATCCCCACTTTCT
CACCTTAACGGCTGCATCTGCCGCGGGGGAAAGTTAGGAAATTTGTCCTG
ACAGTACAGTCGACAGTTGGAAGCCACGAGCGACAGATCATGTTTGAACT
GCTCCACCGTCTTGTGGCGGCAAGTGGAGCAGCGTTTCCACAATGTGCTT
AGATCCATCGGCTCCGAGATGACGTCGTAGTAGTCTGTAGAGCCCATCTT
TACGTGGACGTTTACCTGAGAAAGTTTCGCAAGCTGCGAGCTTCGGGATC
TCAAGTTCCCTCTTTTTCTGCATAGCGTATCAGGTCACGTGGGCGTTCAG
AGCGAGGAACCTGCACAGCTTAGAGGTGTGATTGTGACGTGATTGCGTTT
GTAAATATCGTGTCGACCCTTCAATCGAGCAGGCAGTTGGGGTTTTCCAC
TGGAGGAGGTGATCAGGAAGCGGGCGGAGATACGAGGGAAAGGGAAAGTG
AAAGCGGCGACGATGACGGCCAGCCGGACGCGGGAAGCATCGCACGGCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:145935..147134+

>mRNA_A-nodosum_M_contig1047.22.3 ID=mRNA_A-nodosum_M_contig1047.22.3|Name=mRNA_A-nodosum_M_contig1047.22.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:145935..147134+ (Ascophyllum nodosum dioecious)
ATGGCTACGCTCGACGAGCCCACTCTTGCAGCGGCTTTGAGAAAAACGGT
GGAAGGTGGAAGTCGCCTGGAGAATGTATGGAACCTGCAGATGGCGGCTG
AAATTAGCGCGAAACCCGAACTGGCGACTATGCCGGGGATGCGGAAGATC
GCAAGGCAGTTGGGGTTTTCCACTGGAGGAGGTGATCAGGAAGCGGGCGG
AGATACGAGGGAAAGGGAAAGTGAAAGCGGCGACGATGACGGCCAGCCGG
ACGCGGGAAGCATCGCACGGCAG
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