mRNA_A-nodosum_M_contig1047.22.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.22.2
Unique NamemRNA_A-nodosum_M_contig1047.22.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 2.510e-86
Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 1
Query:    1 RRMLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
            RRML +EALV KQDT VDARW + GRRRKWRTFV+NAQTA QLLAAWGAF+++ID +AA GC+S LDRR FL+LLP + RN +PDKG+ V+Y+GDGH LS+EAEAKAGYR  W  D P PG + Q TVKSI Y QGGS R AKGAQPF T+EL+P   P +F ELGLLPP EPFG LNRLLK++++AMR   D  HFL PVS
Sbjct:   57 RRMLHIEALVFKQDTVVDARWSEFGRRRKWRTFVNNAQTAPQLLAAWGAFKDVIDWQAAQGCYSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSMEAEAKAGYRGVWGSDPPRPGTVQQHTVKSISYHQGGSSRRAKGAQPFATIELEPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVS 258          
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 5.610e-83
Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 1
Query:    1 RRMLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
            RRML +EALV KQDT VDARW + GRRRKWRTFV+NAQTA QLLAAWGAF+++ID +AA GC+S LDRR FL+LLP + RN +PDKG+ V+Y+GDGH LS+EAEAKAGYR  W  D P PG + Q TVKSI Y QGGS R AKGAQPF T+EL+P   P +F ELGLLPP EPFG LNRLLK++++AMR   D  HFL PVS
Sbjct: 1528 RRMLYIEALVFKQDTVVDARWSEFGRRRKWRTFVNNAQTAPQLLAAWGAFKDVIDWQAAQGCYSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSLEAEAKAGYRGVWGSDPPRPGTVQQHTVKSISYHQGGSSRRAKGAQPFATIELEPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVS 1729          
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.810e-28
Identity = 82/220 (37.27%), Postives = 114/220 (51.82%), Query Frame = 1
Query:    7 MLQLEALVSKQDTA--VDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQG---GSHRSAKGAQPFVTMEL--------KPLTTPNTFPE--------LGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPV 603
            +L LE+ ++ + T   VD RW+   RRRKWR FV  A+T+AQL+ AW A    +D   A+  ++ L RR FL  +P   RN +PD G+ V+YFGDGH  ++  +   G  A W    P  GA+    V+ I Y  G   GS  S    QPF T +L        + + + +  PE        LGL PP +  G LNRLL+RS+     TP    F++PV
Sbjct: 1692 LLDLESALAHKQTVLGVDGRWQG-ARRRKWRAFVARARTSAQLVIAWSALEACLDWATAAAVWAALSRRAFLQNIPSQGRNTMPDIGDVVVYFGDGHTAALTFDKALGLSAMWGGQPPVEGAVLLCRVQEIAYCTGVPQGSELSPM--QPFATFKLXXXXXXXXQVIPSDHQEPEVPTLPKEPLGLKPPGDSRGMLNRLLRRSLAVASRTPGSQPFMQPV 1908          
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A0P1AKP8_PLAHL (CREB binding protein/P300 and related TAZ Zn-finger proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP8_PLAHL)

HSP 1 Score: 82.4 bits (202), Expect = 7.220e-14
Identity = 64/193 (33.16%), Postives = 90/193 (46.63%), Query Frame = 1
Query:   49 VDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGY-RAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTF-----PELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
            + + WR+K  R +WR  +    T AQL+        E I  EA       LDRR +L L P+   N IP+ G +VIYFGDGHAL+++ + K+   R   + D P   A    +VKS+ Y  GG         P+    L+P++ P        P     P P     L R+  R +  ++G  D   FLEPVS
Sbjct: 1508 IRSSWRRK--RHEWRLALEGVCTYAQLVFLLHLLLEEFISVEAFMDLHIRLDRREWLKLRPKETHNFIPEVGQTVIYFGDGHALALKEDDKSKRKRFTQKSDKPVRNATVICSVKSVSYHHGGG-------DPYALAVLEPISDPAQHGCVREPGTYFCPLPSREHRLARVFLRILAKLKGLADADPFLEPVS 1691          
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A6G0RU20_9STRA (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RU20_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.710e-10
Identity = 61/188 (32.45%), Postives = 86/188 (45.74%), Query Frame = 1
Query:   76 RRRKWRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGY-RAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTT---------PNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
            +R +WR  +  + T AQL+        E I+ EA       LDRR +L L P+  RN IP+ G  V+YFGDGHAL+++ + K+   R   +   P   A    TV+++ Y  GG         P+    LKP+           P T   L  LP  E    L R+  R +  ++   D   FLEPVS
Sbjct: 1525 KRHEWRLALEGSCTYAQLVFLLHLLLEEFINVEAFMDLHIRLDRREWLKLRPKETRNFIPEVGQVVVYFGDGHALALKEDEKSKKKRFTQKSGTPVRNATVVCTVENVSYHHGGG-------DPYALAVLKPIPEMAHHECIRDPGTL--LCSLPSREQ--RLARVFLRVLAKLKMLADAGPFLEPVS 1701          
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A1V9ZAT2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAT2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.860e-8
Identity = 55/183 (30.05%), Postives = 79/183 (43.17%), Query Frame = 1
Query:   88 WRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRA--AWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTFPELGLLPP-------PEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
            WR  V  AQT AQ+L   GA+ R+ +  +        L R+ +L L P+  RN  PD G +V+YFG GHA ++  +AK  +    A  VD          TV  + Y  G          P+  + L P         +  LPP       P     + R+L R +  ++  P+   FLEPVS
Sbjct: 1275 WRPMVAAAQTTAQVLVLVGAWLRQGVLMDLWMDLVVELTRKDWLQLRPKATRNFCPDVGQTVVYFGVGHAQALTDDAKVKHATPLARPVDTVVQAQTVACTVTKVGYHHGNG-------DPYAVLTLAPSDA-----LVARLPPGSFLCSRPSATQKVGRVLLRILNKLKHDPNAGPFLEPVS 1445          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE2.510e-8667.82Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI5.610e-8367.82Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZDW7_9STRA4.810e-2837.27Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
A0A0P1AKP8_PLAHL7.220e-1433.16CREB binding protein/P300 and related TAZ Zn-finge... [more]
A0A6G0RU20_9STRA9.710e-1032.45Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A1V9ZAT2_9STRA5.860e-830.05Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:143534..145427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size855
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.3e-12
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size234
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.22.2prot_A-nodosum_M_contig1047.22.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 144667..145256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.0916576-UTR-A-nodosum_M_contig1047:143533..1435771680866423.0916576-UTR-A-nodosum_M_contig1047:143533..143577Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 143534..143577 +
1680866423.1054711-UTR-A-nodosum_M_contig1047:143796..1439051680866423.1054711-UTR-A-nodosum_M_contig1047:143796..143905Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 143797..143905 +
1680866423.1199708-UTR-A-nodosum_M_contig1047:144125..1442841680866423.1199708-UTR-A-nodosum_M_contig1047:144125..144284Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 144126..144284 +
1680866423.1306763-UTR-A-nodosum_M_contig1047:144528..1446661680866423.1306763-UTR-A-nodosum_M_contig1047:144528..144666Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 144529..144666 +
1680866423.1569076-UTR-A-nodosum_M_contig1047:145256..1454271680866423.1569076-UTR-A-nodosum_M_contig1047:145256..145427Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 145257..145427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.1398096-CDS-A-nodosum_M_contig1047:144666..1446781680866423.1398096-CDS-A-nodosum_M_contig1047:144666..144678Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 144667..144678 +
1680866423.1487195-CDS-A-nodosum_M_contig1047:145034..1452561680866423.1487195-CDS-A-nodosum_M_contig1047:145034..145256Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 145035..145256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.22.2

>prot_A-nodosum_M_contig1047.22.2 ID=prot_A-nodosum_M_contig1047.22.2|Name=mRNA_A-nodosum_M_contig1047.22.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
MELKPLTTPNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEP
VSPGDISRGDYHPTTCGSPLPPPVRRQ*
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mRNA from alignment at A-nodosum_M_contig1047:143534..145427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.22.2 ID=mRNA_A-nodosum_M_contig1047.22.2|Name=mRNA_A-nodosum_M_contig1047.22.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:143534..145427+ (Ascophyllum nodosum dioecious)
AGGAGGATGCTGCAGCTGGAGGCCTTGGTCTCCAAGCAGGACACGTGAGC AACGTGTAGCTCGTCTGGTCGTGGCGCAGCTTGCCTATTTTTCTCCGAAT CGCTTCCTGCTTGACGCGATGTTTCCGTGATCGGTCGTACGTAATGTGAA CGAGATGGCCTTCAACGAAAGGGCCCTTACTCCAAACGTCGGTGTATCCG CGTCGTCTGTTAAAGTATCGTTCGCCCACGTTCCCTTGATCCCTTGATGG CTGTGACCTTCAGAGCGGTGGATGCGCGGTGGAGAAAGAAAGGCCGGCGC CGTAAGTGGCGGACTTTTGTTCACAACGCGCAGACGGCTGCTCAACTTCT GGCAGCATGGGGGGCGTTCCGAGTGAGTCATTCTGCTGAATTTTCGACGT AGGAGGAACCACGTGTAACAATCTGCTGTAGTCTGAGCTTTACCCCCGGA CTTTGGCTTGCCCTTAACGCTTCAACCACCGATCTTTGGTATGCTCATCT CCTTGCCGCTACTACCAACAGTATTTACACCCTCGAATCTTGAGTGCCTG AAGCGAGAGGTGCTCTTGCTTGTTGACCGTTGCATTGCACAGGAAATGAT CGACTGAGAGGCAGCGAGCGGATGCTTCTCGACGCTCGACCGCCGAACGT TCCTGGCGCTCCTGCCGGAAAATGCGCGGAACGAAATACCGGACAAGGGT AACAGCGTGATTTACTTCGGTGACGGGCACGCGCTCTCTGTCGAAGCCGA GGTGTGTACAGCGGTGTCTTTGGAAATGCTCGAAGGGTGTCCTTGGGAAG AGTATTTGCCTACCCCAGTCTAAGTACCCGACCGGGTCGGACTTCTAAGG GTGTTATTGAGCAGTCCCAAAGTGCGTTGCCAGATTGACACGGCGTCCGG TGGTTTATCGCTCTCCATATTGATCGGATATAGCCCTTTTCTCATACCCG CCCTCATTCGTTTCATCGCGAAACTTTCGTTTTTTTTTTTCTCAGGCAAA GGCTGGGTACAGGGCCGCGTGGGAGGTCGACGCGCCGGAGCCAGGAGCAA TTGGACAATTCACGGTGAAGTCTATAGAATACGACCAGGGAGGATCACAC AGGAGTGCCAAGGGGGCGCAACCATTCGTGACGATGGAGCTGAAGGTGAC GCGATGGACGCGCCGAACGTCGGGGTTCGGGGCGTTGTTTTGACATCTTC CTTGTCAGAGCTGTGGTGGCGCTGCATAGTGTTCGTGACCTCCCCCCTAC CTCCTTCCCTTCCCCTTTAGCCTTGGCGTTGGCTTTGGCTTTTGGAATTG TTGCGCAGTTTTTTGCGATCAAGTTTACCTACTGCTAGAGCTTTTGTAGA TGGGGCTGTGGCGGTAGTTGCTTGAAGCGGCGTCCAACTTTTTCTAGCTC CTTAGGTTTATAGTATAATTTTACCATGAAGCATGCGCTTAAAGACTGCA CGCTAACCTTTGCAACTTTCGGCAACCCGCGTTGCGTGACATCAATCCCA GCCATTGACGACACCAAATACGTTCCCCGAGCTGGGGTTGCTTCCGCCGC CGGAGCCTTTTGGCACTCTTAATCGCCTTCTTAAGAGATCCATAGAGGCC ATGCGGGGGACGCCAGACTTTGTGCATTTTCTTGAGCCTGTAAGCCCGGG CGATATATCCAGGGGAGATTACCATCCCACGACATGCGGCTCCCCTCTCC CGCCACCCGTTCGCAGACAATAAGTTGAAGTCGACGGGGTGAAGCTTGAG AGTGCTCCGCCCACCCGACCCGACCGACGAAACCTATGAATAGCTCTATT AATAGCTCTAGTTGGTACGGCATTATAGTTGGATATGATGAGTTATGATG CCTTCCGACGCATGGTGTCTGCTGTGACGCCGTTGCTTCCGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:143534..145427+

>mRNA_A-nodosum_M_contig1047.22.2 ID=mRNA_A-nodosum_M_contig1047.22.2|Name=mRNA_A-nodosum_M_contig1047.22.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:143534..145427+ (Ascophyllum nodosum dioecious)
ATGGAGCTGAAGCCATTGACGACACCAAATACGTTCCCCGAGCTGGGGTT
GCTTCCGCCGCCGGAGCCTTTTGGCACTCTTAATCGCCTTCTTAAGAGAT
CCATAGAGGCCATGCGGGGGACGCCAGACTTTGTGCATTTTCTTGAGCCT
GTAAGCCCGGGCGATATATCCAGGGGAGATTACCATCCCACGACATGCGG
CTCCCCTCTCCCGCCACCCGTTCGCAGACAATAA
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