mRNA_A-nodosum_M_contig1047.22.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE) HSP 1 Score: 282 bits (722), Expect = 2.510e-86 Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 1
Query: 1 RRMLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
RRML +EALV KQDT VDARW + GRRRKWRTFV+NAQTA QLLAAWGAF+++ID +AA GC+S LDRR FL+LLP + RN +PDKG+ V+Y+GDGH LS+EAEAKAGYR W D P PG + Q TVKSI Y QGGS R AKGAQPF T+EL+P P +F ELGLLPP EPFG LNRLLK++++AMR D HFL PVS
Sbjct: 57 RRMLHIEALVFKQDTVVDARWSEFGRRRKWRTFVNNAQTAPQLLAAWGAFKDVIDWQAAQGCYSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSMEAEAKAGYRGVWGSDPPRPGTVQQHTVKSISYHQGGSSRRAKGAQPFATIELEPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVS 258
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI) HSP 1 Score: 282 bits (721), Expect = 5.610e-83 Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 1
Query: 1 RRMLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
RRML +EALV KQDT VDARW + GRRRKWRTFV+NAQTA QLLAAWGAF+++ID +AA GC+S LDRR FL+LLP + RN +PDKG+ V+Y+GDGH LS+EAEAKAGYR W D P PG + Q TVKSI Y QGGS R AKGAQPF T+EL+P P +F ELGLLPP EPFG LNRLLK++++AMR D HFL PVS
Sbjct: 1528 RRMLYIEALVFKQDTVVDARWSEFGRRRKWRTFVNNAQTAPQLLAAWGAFKDVIDWQAAQGCYSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSLEAEAKAGYRGVWGSDPPRPGTVQQHTVKSISYHQGGSSRRAKGAQPFATIELEPTPVPRSFEELGLLPPTEPFGKLNRLLKKAVKAMRERADVAHFLVPVS 1729
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA) HSP 1 Score: 124 bits (310), Expect = 4.810e-28 Identity = 82/220 (37.27%), Postives = 114/220 (51.82%), Query Frame = 1
Query: 7 MLQLEALVSKQDTA--VDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQG---GSHRSAKGAQPFVTMEL--------KPLTTPNTFPE--------LGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPV 603
+L LE+ ++ + T VD RW+ RRRKWR FV A+T+AQL+ AW A +D A+ ++ L RR FL +P RN +PD G+ V+YFGDGH ++ + G A W P GA+ V+ I Y G GS S QPF T +L + + + + PE LGL PP + G LNRLL+RS+ TP F++PV
Sbjct: 1692 LLDLESALAHKQTVLGVDGRWQG-ARRRKWRAFVARARTSAQLVIAWSALEACLDWATAAAVWAALSRRAFLQNIPSQGRNTMPDIGDVVVYFGDGHTAALTFDKALGLSAMWGGQPPVEGAVLLCRVQEIAYCTGVPQGSELSPM--QPFATFKLXXXXXXXXQVIPSDHQEPEVPTLPKEPLGLKPPGDSRGMLNRLLRRSLAVASRTPGSQPFMQPV 1908
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A0P1AKP8_PLAHL (CREB binding protein/P300 and related TAZ Zn-finger proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP8_PLAHL) HSP 1 Score: 82.4 bits (202), Expect = 7.220e-14 Identity = 64/193 (33.16%), Postives = 90/193 (46.63%), Query Frame = 1
Query: 49 VDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGY-RAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTF-----PELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
+ + WR+K R +WR + T AQL+ E I EA LDRR +L L P+ N IP+ G +VIYFGDGHAL+++ + K+ R + D P A +VKS+ Y GG P+ L+P++ P P P P L R+ R + ++G D FLEPVS
Sbjct: 1508 IRSSWRRK--RHEWRLALEGVCTYAQLVFLLHLLLEEFISVEAFMDLHIRLDRREWLKLRPKETHNFIPEVGQTVIYFGDGHALALKEDDKSKRKRFTQKSDKPVRNATVICSVKSVSYHHGGG-------DPYALAVLEPISDPAQHGCVREPGTYFCPLPSREHRLARVFLRILAKLKGLADADPFLEPVS 1691
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A6G0RU20_9STRA (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RU20_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 9.710e-10 Identity = 61/188 (32.45%), Postives = 86/188 (45.74%), Query Frame = 1
Query: 76 RRRKWRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGY-RAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTT---------PNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
+R +WR + + T AQL+ E I+ EA LDRR +L L P+ RN IP+ G V+YFGDGHAL+++ + K+ R + P A TV+++ Y GG P+ LKP+ P T L LP E L R+ R + ++ D FLEPVS
Sbjct: 1525 KRHEWRLALEGSCTYAQLVFLLHLLLEEFINVEAFMDLHIRLDRREWLKLRPKETRNFIPEVGQVVVYFGDGHALALKEDEKSKKKRFTQKSGTPVRNATVVCTVENVSYHHGGG-------DPYALAVLKPIPEMAHHECIRDPGTL--LCSLPSREQ--RLARVFLRVLAKLKMLADAGPFLEPVS 1701
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Match: A0A1V9ZAT2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAT2_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.860e-8 Identity = 55/183 (30.05%), Postives = 79/183 (43.17%), Query Frame = 1
Query: 88 WRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRA--AWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKPLTTPNTFPELGLLPP-------PEPFGTLNRLLKRSIEAMRGTPDFVHFLEPVS 606
WR V AQT AQ+L GA+ R+ + + L R+ +L L P+ RN PD G +V+YFG GHA ++ +AK + A VD TV + Y G P+ + L P + LPP P + R+L R + ++ P+ FLEPVS
Sbjct: 1275 WRPMVAAAQTTAQVLVLVGAWLRQGVLMDLWMDLVVELTRKDWLQLRPKATRNFCPDVGQTVVYFGVGHAQALTDDAKVKHATPLARPVDTVVQAQTVACTVTKVGYHHGNG-------DPYAVLTLAPSDA-----LVARLPPGSFLCSRPSATQKVGRVLLRILNKLKHDPNAGPFLEPVS 1445 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1047.22.2 >prot_A-nodosum_M_contig1047.22.2 ID=prot_A-nodosum_M_contig1047.22.2|Name=mRNA_A-nodosum_M_contig1047.22.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp MELKPLTTPNTFPELGLLPPPEPFGTLNRLLKRSIEAMRGTPDFVHFLEPback to top mRNA from alignment at A-nodosum_M_contig1047:143534..145427+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1047.22.2 ID=mRNA_A-nodosum_M_contig1047.22.2|Name=mRNA_A-nodosum_M_contig1047.22.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:143534..145427+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:143534..145427+ >mRNA_A-nodosum_M_contig1047.22.2 ID=mRNA_A-nodosum_M_contig1047.22.2|Name=mRNA_A-nodosum_M_contig1047.22.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:143534..145427+ (Ascophyllum nodosum dioecious)back to top |