mRNA_A-nodosum_M_contig1047.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1047.22.1
Unique NamemRNA_A-nodosum_M_contig1047.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 8.720e-66
Identity = 108/158 (68.35%), Postives = 126/158 (79.75%), Query Frame = 1 
Query:    1 RRMLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKAVGV 474
            RRML +EALV KQDT VDARW + GRRRKWRTFV+NAQTA QLLAAWGAF+++ID +AA GC+S LDRR FL+LLP + RN +PDKG+ V+Y+GDGH LS+EAEAKAGYR  W  D P PG + Q TVKSI Y QGGS R AKGAQPF T+EL+   V
Sbjct:   57 RRMLHIEALVFKQDTVVDARWSEFGRRRKWRTFVNNAQTAPQLLAAWGAFKDVIDWQAAQGCYSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSMEAEAKAGYRGVWGSDPPRPGTVQQHTVKSISYHQGGSSRRAKGAQPFATIELEPTPV 214
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BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 3.340e-64
Identity = 108/158 (68.35%), Postives = 126/158 (79.75%), Query Frame = 1 
Query:    1 RRMLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKAVGV 474
            RRML +EALV KQDT VDARW + GRRRKWRTFV+NAQTA QLLAAWGAF+++ID +AA GC+S LDRR FL+LLP + RN +PDKG+ V+Y+GDGH LS+EAEAKAGYR  W  D P PG + Q TVKSI Y QGGS R AKGAQPF T+EL+   V
Sbjct: 1528 RRMLYIEALVFKQDTVVDARWSEFGRRRKWRTFVNNAQTAPQLLAAWGAFKDVIDWQAAQGCYSELDRRKFLSLLPAHLRNSMPDKGDEVLYYGDGHVLSLEAEAKAGYRGVWGSDPPRPGTVQQHTVKSISYHQGGSSRRAKGAQPFATIELEPTPV 1685
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BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.410e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:    7 MLQLEALVSKQDTA--VDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFREMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRAAWEVDAPEPGAIGQFTVKSIEYDQG---GSHRSAKGAQPFVTMEL 459
            +L LE+ ++ + T   VD RW+   RRRKWR FV  A+T+AQL+ AW A    +D   A+  ++ L RR FL  +P   RN +PD G+ V+YFGDGH  ++  +   G  A W    P  GA+    V+ I Y  G   GS  S    QPF T +L
Sbjct: 1692 LLDLESALAHKQTVLGVDGRWQG-ARRRKWRAFVARARTSAQLVIAWSALEACLDWATAAAVWAALSRRAFLQNIPSQGRNTMPDIGDVVVYFGDGHTAALTFDKALGLSAMWGGQPPVEGAVLLCRVQEIAYCTGVPQGSELSPM--QPFATFKL 1844
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BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Match: A0A0P1AKP8_PLAHL (CREB binding protein/P300 and related TAZ Zn-finger proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP8_PLAHL)

HSP 1 Score: 68.6 bits (166), Expect = 4.700e-10
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:   49 VDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGY-RAAWEVDAPEPGAIGQFTVKSIEYDQGG 411
            + + WR+K  R +WR  +    T AQL+        E I  EA       LDRR +L L P+   N IP+ G +VIYFGDGHAL+++ + K+   R   + D P   A    +VKS+ Y  GG
Sbjct: 1508 IRSSWRRK--RHEWRLALEGVCTYAQLVFLLHLLLEEFISVEAFMDLHIRLDRREWLKLRPKETHNFIPEVGQTVIYFGDGHALALKEDDKSKRKRFTQKSDKPVRNATVICSVKSVSYHHGG 1628
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BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Match: A0A6G0RU20_9STRA (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RU20_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.960e-9
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = 1 
Query:   76 RRRKWRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGY-RAAWEVDAPEPGAIGQFTVKSIEYDQGGSHRSAKGAQPFVTMELKAV 468
            +R +WR  +  + T AQL+        E I+ EA       LDRR +L L P+  RN IP+ G  V+YFGDGHAL+++ + K+   R   +   P   A    TV+++ Y  G       G  P+    LK +
Sbjct: 1525 KRHEWRLALEGSCTYAQLVFLLHLLLEEFINVEAFMDLHIRLDRREWLKLRPKETRNFIPEVGQVVVYFGDGHALALKEDEKSKKKRFTQKSGTPVRNATVVCTVENVSYHHG-------GGDPYALAVLKPI 1650
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BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Match: A0A1V9ZAT2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAT2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-5
Identity = 38/110 (34.55%), Postives = 53/110 (48.18%), Query Frame = 1 
Query:   88 WRTFVHNAQTAAQLLAAWGAF-REMID*EAASGCFSTLDRRTFLALLPENARNEIPDKGNSVIYFGDGHALSVEAEAKAGYRA--AWEVDAPEPGAIGQFTVKSIEYDQG 408
            WR  V  AQT AQ+L   GA+ R+ +  +        L R+ +L L P+  RN  PD G +V+YFG GHA ++  +AK  +    A  VD          TV  + Y  G
Sbjct: 1275 WRPMVAAAQTTAQVLVLVGAWLRQGVLMDLWMDLVVELTRKDWLQLRPKATRNFCPDVGQTVVYFGVGHAQALTDDAKVKHATPLARPVDTVVQAQTVACTVTKVGYHHG 1384
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1047.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE8.720e-6668.35Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI3.340e-6468.35Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZDW7_9STRA1.410e-2239.74Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
A0A0P1AKP8_PLAHL4.700e-1037.40CREB binding protein/P300 and related TAZ Zn-finge... [more]
A0A6G0RU20_9STRA3.960e-933.08Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A1V9ZAT2_9STRA1.910e-534.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1047contigA-nodosum_M_contig1047:143534..147134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size580
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryno signal peptide or anchor
Exons5
Evalue6.59e-19
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size162
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1047.22.1prot_A-nodosum_M_contig1047.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1047 143540..144140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.1847966-UTR-A-nodosum_M_contig1047:143533..1435391680866423.1847966-UTR-A-nodosum_M_contig1047:143533..143539Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 143534..143539 +
1680866423.227118-UTR-A-nodosum_M_contig1047:144140..1442841680866423.227118-UTR-A-nodosum_M_contig1047:144140..144284Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 144141..144284 +
1680866423.2389781-UTR-A-nodosum_M_contig1047:144528..1446781680866423.2389781-UTR-A-nodosum_M_contig1047:144528..144678Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 144529..144678 +
1680866423.2499022-UTR-A-nodosum_M_contig1047:147016..1471341680866423.2499022-UTR-A-nodosum_M_contig1047:147016..147134Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1047 147017..147134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866423.1970356-CDS-A-nodosum_M_contig1047:143539..1435771680866423.1970356-CDS-A-nodosum_M_contig1047:143539..143577Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 143540..143577 +
1680866423.2100554-CDS-A-nodosum_M_contig1047:143796..1439051680866423.2100554-CDS-A-nodosum_M_contig1047:143796..143905Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 143797..143905 +
1680866423.2186391-CDS-A-nodosum_M_contig1047:144125..1441401680866423.2186391-CDS-A-nodosum_M_contig1047:144125..144140Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1047 144126..144140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1047.22.1

>prot_A-nodosum_M_contig1047.22.1 ID=prot_A-nodosum_M_contig1047.22.1|Name=mRNA_A-nodosum_M_contig1047.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=54bp
MLQLEALVSKQDTAVDARWRKKGRRRKWRTFVHNAQTAAQLLAAWGAFRE
MID*
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mRNA from alignment at A-nodosum_M_contig1047:143534..147134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1047.22.1 ID=mRNA_A-nodosum_M_contig1047.22.1|Name=mRNA_A-nodosum_M_contig1047.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3601bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:143534..147134+ (Ascophyllum nodosum dioecious)
AGGAGGATGCTGCAGCTGGAGGCCTTGGTCTCCAAGCAGGACACGTGAGC
AACGTGTAGCTCGTCTGGTCGTGGCGCAGCTTGCCTATTTTTCTCCGAAT
CGCTTCCTGCTTGACGCGATGTTTCCGTGATCGGTCGTACGTAATGTGAA
CGAGATGGCCTTCAACGAAAGGGCCCTTACTCCAAACGTCGGTGTATCCG
CGTCGTCTGTTAAAGTATCGTTCGCCCACGTTCCCTTGATCCCTTGATGG
CTGTGACCTTCAGAGCGGTGGATGCGCGGTGGAGAAAGAAAGGCCGGCGC
CGTAAGTGGCGGACTTTTGTTCACAACGCGCAGACGGCTGCTCAACTTCT
GGCAGCATGGGGGGCGTTCCGAGTGAGTCATTCTGCTGAATTTTCGACGT
AGGAGGAACCACGTGTAACAATCTGCTGTAGTCTGAGCTTTACCCCCGGA
CTTTGGCTTGCCCTTAACGCTTCAACCACCGATCTTTGGTATGCTCATCT
CCTTGCCGCTACTACCAACAGTATTTACACCCTCGAATCTTGAGTGCCTG
AAGCGAGAGGTGCTCTTGCTTGTTGACCGTTGCATTGCACAGGAAATGAT
CGACTGAGAGGCAGCGAGCGGATGCTTCTCGACGCTCGACCGCCGAACGT
TCCTGGCGCTCCTGCCGGAAAATGCGCGGAACGAAATACCGGACAAGGGT
AACAGCGTGATTTACTTCGGTGACGGGCACGCGCTCTCTGTCGAAGCCGA
GGTGTGTACAGCGGTGTCTTTGGAAATGCTCGAAGGGTGTCCTTGGGAAG
AGTATTTGCCTACCCCAGTCTAAGTACCCGACCGGGTCGGACTTCTAAGG
GTGTTATTGAGCAGTCCCAAAGTGCGTTGCCAGATTGACACGGCGTCCGG
TGGTTTATCGCTCTCCATATTGATCGGATATAGCCCTTTTCTCATACCCG
CCCTCATTCGTTTCATCGCGAAACTTTCGTTTTTTTTTTTCTCAGGCAAA
GGCTGGGTACAGGGCCGCGTGGGAGGTCGACGCGCCGGAGCCAGGAGCAA
TTGGACAATTCACGGTGAAGTCTATAGAATACGACCAGGGAGGATCACAC
AGGAGTGCCAAGGGGGCGCAACCATTCGTGACGATGGAGCTGAAGGTGAC
GCGATGGACGCGCCGAACGTCGGGGTTCGGGGCGTTGTTTTGACATCTTC
CTTGTCAGAGCTGTGGTGGCGCTGCATAGTGTTCGTGACCTCCCCCCTAC
CTCCTTCCCTTCCCCTTTAGCCTTGGCGTTGGCTTTGGCTTTTGGAATTG
TTGCGCAGTTTTTTGCGATCAAGTTTACCTACTGCTAGAGCTTTTGTAGA
TGGGGCTGTGGCGGTAGTTGCTTGAAGCGGCGTCCAACTTTTTCTAGCTC
CTTAGGTTTATAGTATAATTTTACCATGAAGCATGCGCTTAAAGACTGCA
CGCTAACCTTTGCAACTTTCGGCAACCCGCGTTGCGTGACATCAATCCCA
GCCATTGACGACACCAAATACGTTCCCCGAGCTGGGGTTGCTTCCGCCGC
CGGAGCCTTTTGGCACTCTTAATCGCCTTCTTAAGAGATCCATAGAGGCC
ATGCGGGGGACGCCAGACTTTGTGCATTTTCTTGAGCCTGTAAGCCCGGG
CGATATATCCAGGGGAGATTACCATCCCACGACATGCGGCTCCCCTCTCC
CGCCACCCGTTCGCAGACAATAAGTTGAAGTCGACGGGGTGAAGCTTGAG
AGTGCTCCGCCCACCCGACCCGACCGACGAAACCTATGAATAGCTCTATT
AATAGCTCTAGTTGGTACGGCATTATAGTTGGATATGATGAGTTATGATG
CCTTCCGACGCATGGTGTCTGCTGTGACGCCGTTGCTTCCGGACTTACAG
ACTACTACGACGTCATCTCGGAGCCGATGGATCTAAGCACATTGTGGAAA
CGCTGCTCCACTTGCCGCTACAAGACGGTGGAGcAGTTCAAACATGATCT
GTCGCTCGTGGCTTCCAACTGTCGACTGTACTGTCAGGACAAATTTCCTA
ACTTTCCCCCGCGGCAGATGCAGCCGTTAGGTGAAAGTGGGGTGGTGCTT
GACTGGGTGCCTGCACTGCACGAGGTTGTAAGTCTCTCTCGTGCACCGTC
TTGCTTTATATACTCCCCATTTTAGGATGTCTTGCAAGCACAAGTGTTTC
CATATATTTTGTAAGTGCCCTCGGTAGTGTTACCCTCTAACGTATTGACC
ATCTACAGACTTTAAACGTCCTTGTGTGTTATTCAGAGACCATTTGAGAA
TAGCTTGTCCGCCTTTTTTGAATATATTTGAGGTGCAGCGGCCACAACGT
TGACGGTGGTGGTGACTCAGCGTCTCGTTCTTGTCGCTTCCGGCGATGCT
CAGGTGGGTATGGCTACGCTCGACGAGCCCACTCTTGCAGCGGCTTTGAG
AAAAACGGTGGAAGGTGGAAGTCGCCTGGAGAATGTATGGAACCTGCAGA
TGGCGGCTGAAATTAGCGCGAAACCCGAACTGGCGACTATGCCGGGGATG
CGGAAGATCGCAAGGTTTGGTGGACCTGAAGCCCGCATGAGGCGTGCACT
AGTAGGGTTCGGTCCACCATACCTTGCGATCTTCCGCATCCCCGGCATGG
TCGCCAGTTCGGGTTTCGCGCTAATTTCAGCCGCCATCTGCGTGATCCAT
ACGTTCTCCAGGCGACTTCCGTCTTCCACCGTTTTTCTCAAAGCCGCTGC
AAGAGTGGGTTCGTCGAGCGTAGCCATACCCACCTGAGCATCGCCGGAAG
CGACAAGGACGAGACGCTGAGTCACCACCACCGTCTGTGGCCGCTGCACC
TCAAATATATTAAAAAAAGGCGGACAAGCTATTCTCAAATGGTCTCTGAA
TAACACACAAGGACGTTTAAAGTCTGTAGATGGTCAATACGTTAGAGGGT
AACACTTCCGAGGGCACTTACAAAATATATGGAAACACTTGTGCTTGCAA
GACATCCTAAAATGGGGAGTATATAAAGCAAGACGGTGCACGAGAGAGAC
TTACAACCTCGTGCAGTGCAGGCACCCAGTCAAGCACCATCCCCACTTTC
TCACCTTAACGGCTGCATCTGCCGCGGGGGAAAGTTAGGAAATTTGTCCT
GACAGTACAGTCGACAGTTGGAAGCCACGAGCGACAGATCATGTTTGAAC
TGCTCCACCGTCTTGTGGCGGCAAGTGGAGCAGCGTTTCCACAATGTGCT
TAGATCCATCGGCTCCGAGATGACGTCGTAGTAGTCTGTAGAGCCCATCT
TTACGTGGACGTTTACCTGAGAAAGTTTCGCAAGCTGCGAGCTTCGGGAT
CTCAAGTTCCCTCTTTTTCTGCATAGCGTATCAGGTCACGTGGGCGTTCA
GAGCGAGGAACCTGCACAGCTTAGAGGTGTGATTGTGACGTGATTGCGTT
TGTAAATATCGTGTCGACCCTTCAATCGAGCAGGCAGTTGGGGTTTTCCA
CTGGAGGAGGTGATCAGGAAGCGGGCGGAGATACGAGGGAAAGGGAAAGT
GAAAGCGGCGACGATGACGGCCAGCCGGACGCGGGAAGCATCGCACGGCA
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1047:143534..147134+

>mRNA_A-nodosum_M_contig1047.22.1 ID=mRNA_A-nodosum_M_contig1047.22.1|Name=mRNA_A-nodosum_M_contig1047.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=162bp|location=Sequence derived from alignment at A-nodosum_M_contig1047:143534..147134+ (Ascophyllum nodosum dioecious)
ATGCTGCAGCTGGAGGCCTTGGTCTCCAAGCAGGACACAGCGGTGGATGC
GCGGTGGAGAAAGAAAGGCCGGCGCCGTAAGTGGCGGACTTTTGTTCACA
ACGCGCAGACGGCTGCTCAACTTCTGGCAGCATGGGGGGCGTTCCGAGAA
ATGATCGACTGA
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