mRNA_A-nodosum_M_contig1046.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1046.4.1
Unique NamemRNA_A-nodosum_M_contig1046.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1046.4.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.030e-14
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 GMVADLRLMIDNCRRYYTGNPNHEEKTIQLALSNAKIVEDALQAGLELLLPEWQAAA-APP 180
            GMVADLRLM++NC+RYYT +   +  T Q AL+NA  V+DAL+AG++ LLPEWQAA  APP
Sbjct:  929 GMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAAVQDALEAGVKALLPEWQAATPAPP 989
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BLAST of mRNA_A-nodosum_M_contig1046.4.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.820e-7
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 GMVADLRLMIDNCRRYYTGNPNHEEKTIQLALSNAKIVEDALQA 132
            GMVADLRLM++NC+RYYT +   +  T Q AL+NA  V+DAL+A
Sbjct:  548 GMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAAVQDALEA 591
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1046.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE1.030e-1462.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI2.820e-759.09Global transcription factor group n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1046contigA-nodosum_M_contig1046:10357..11412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size302
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.3019872-CDS-A-nodosum_M_contig1046:10356..105241680866420.3019872-CDS-A-nodosum_M_contig1046:10356..10524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 10357..10524 -
1680866420.3109646-CDS-A-nodosum_M_contig1046:10882..109701680866420.3109646-CDS-A-nodosum_M_contig1046:10882..10970Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 10883..10970 -
1680866420.3231583-CDS-A-nodosum_M_contig1046:11368..114091680866420.3231583-CDS-A-nodosum_M_contig1046:11368..11409Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 11369..11409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.334056-UTR-A-nodosum_M_contig1046:11409..114121680866420.334056-UTR-A-nodosum_M_contig1046:11409..11412Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1046 11410..11412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1046.4.1prot_A-nodosum_M_contig1046.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1046 10357..11409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1046.4.1

>prot_A-nodosum_M_contig1046.4.1 ID=prot_A-nodosum_M_contig1046.4.1|Name=mRNA_A-nodosum_M_contig1046.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
MVADLRLMIDNCRRYYTGNPNHEEKTIQLALSNAKIVEDALQAGLELLLP
EWQAAAAPPQPGNRSRPKSVTPLLKSVSPPPKADRRASLPSGTASASQL
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mRNA from alignment at A-nodosum_M_contig1046:10357..11412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1046.4.1 ID=mRNA_A-nodosum_M_contig1046.4.1|Name=mRNA_A-nodosum_M_contig1046.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1056bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:10357..11412- (Ascophyllum nodosum dioecious)
GGGATGGTGGCAGATCTTCGACTGATGATAGATAACTGCAGAAGGTGAGA
GCCCGTGCACTCGATGTGGGCTGCCGTGGTATATGTCCCGGCGTGTGCGA
AGATTTCTTCTCGCGTCCCACCATGCCCCCAATATCTTGCCGCCTCGCCG
TTTCTAGCAGATGCTAGTCGTGGGGAGCCACGTCTAGCTCCCCATGGTAC
TGGTACATAAACGGGCAGATGCGCTCTAGAGGGAACCAAGCACGAGACTC
GACACACCGCACACCTGGGTGTCTTATACCGCTTTTACTCTCACAAGCCT
TTTTTTCTCTTTAAAAACATTACATCAGAAGTGGCTGCTTTTGGCCTCCC
TTCTCTACTCCTCCCCCCTCCTCTAGCCCCCTCTGCTTGACCCATAAACA
CCAACCGCGTTTGGCCGTGCCCCCCGCCTGCTTCGGAATTAGGTACTACA
CGGGCAACCCTAACCACGAGGAAAAAACTATCCAGCTGGCGTTGTCCAAC
GCCAAAATTGTCGAGGACGCTCTCCAAGCGGTGAGCGTGGCTGTTAGCCA
ACGTTCCGGCTCACTTGGAGCCATGCGGTTTTCCTGTGGGGAGAAGTGTC
CACTGGTACTCTACTCTATCGAGGCCGATTGAGTTGAGTTTGCACTACGT
CTCGTAACGACGCTGTTGTTCTCGATACAGAGTATGCTGCGTTTTGGCTC
TTGAATCGAGAGCCCGCTCCTCACGCCTGTTGTATAAGCCTTCTTCTTTA
GAAGCATGCATTTGCTGAAGCCACCTCACCCCCCCTACCCTAATTACTAT
ATTCTACGTTTTTTTCTCGTTTCTTTTTGTCGGGGGCGTTTGTCGCTCTC
CCACCCGTTAAATTGACCGCACACGGGCGCAATCCAAGGGTCTGGAGCTA
CTGCTCCCAGAATGGCAAGCTGCGGCAGCTCCTCCACAGCCGGGCAACAG
AAGTCGGCCGAAGTCGGTCACGCCTCTCCTGAAGTCGGTCTCGCCTCCCC
CGAAGGCGGATCGGAGAGCTAGCCTGCCGTCTGGCACCGCCTCCGCCTCG
CAGCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1046:10357..11412-

>mRNA_A-nodosum_M_contig1046.4.1 ID=mRNA_A-nodosum_M_contig1046.4.1|Name=mRNA_A-nodosum_M_contig1046.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:10357..11412- (Ascophyllum nodosum dioecious)
ATGGTGGCAGATCTTCGACTGATGATAGATAACTGCAGAAGGTACTACAC
GGGCAACCCTAACCACGAGGAAAAAACTATCCAGCTGGCGTTGTCCAACG
CCAAAATTGTCGAGGACGCTCTCCAAGCGGGTCTGGAGCTACTGCTCCCA
GAATGGCAAGCTGCGGCAGCTCCTCCACAGCCGGGCAACAGAAGTCGGCC
GAAGTCGGTCACGCCTCTCCTGAAGTCGGTCTCGCCTCCCCCGAAGGCGG
ATCGGAGAGCTAGCCTGCCGTCTGGCACCGCCTCCGCCTCGCAGCTC
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