mRNA_A-nodosum_M_contig1046.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1046.25.1
Unique NamemRNA_A-nodosum_M_contig1046.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A0J8B0L4_BETVV (CCHC-type domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0L4_BETVV)

HSP 1 Score: 66.6 bits (161), Expect = 6.470e-10
Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  325 GNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEW---ES---DSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKA 690
            G CFNCGK+GH A DCRS KK E S + D+     GD++E +   ES   DSGA+ HM   +  +S + ++     +  ADG  +   G G ++V         K V + DV YVP L  NLLS   A
Sbjct:   64 GRCFNCGKRGHFAKDCRSPKKKEESSSTDELAFVAGDQEELYAVAESCYVDSGASRHMTGNKGLLSNFVELLDAVKIVTADGRTICGIGTGDMKVGRG------KTVTLKDVLYVPDLKMNLLSVSAA 185          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A0J7K4F4_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4F4_LASNI)

HSP 1 Score: 67.4 bits (163), Expect = 2.670e-9
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  289 KGKNRRLH-HKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARG------DRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKAMEQ 699
            KG N + +  KFDG CFNC K GHR+ DCRS KKS+++  +DD   A         + E W  DS AT HM + +       K         A+  +  +   G + ++L       K++K++++ YVP L  NLLS     E+
Sbjct:  220 KGNNTKTNFQKFDGKCFNCDKIGHRSRDCRSKKKSDKAANSDDVLTAIACNAELIRKSESWCLDSSATRHMCNDKQKFEVINKDEQSRVYTAAEHYVKSIK-TGNVSLNLKANQRENKVIKLENILYVPELRNNLLSVPTVTER 362          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: UPI00051C49C7 (uncharacterized protein LOC104116242 n=2 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C49C7)

HSP 1 Score: 57.0 bits (136), Expect = 7.840e-7
Identity = 34/121 (28.10%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  316 KFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
            +F+GNC+NCGK GHR+ DCR+ KK ++                       AT H+   R   + Y  V    T+ + +     ++G G+I + +     + K+V +++V +VP + +NL+S
Sbjct:   25 RFNGNCYNCGKDGHRSADCRAPKKDKKK----------------------ATCHVCAVREAFATYALVGPEGTLSMGNSATAKIEGSGKIFMKMT----SGKVVTLNNVFHVPEIRKNLVS 119          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A0J7K988_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K988_LASNI)

HSP 1 Score: 59.7 bits (143), Expect = 1.140e-6
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  331 CFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEE-----------------WESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
            CFNCGK+GH A +CR  KK ++S    D+      +KE+                 W +DSGA+ HM   R   +++  V   T + +AD + L V G G I V     G     VK+ DV YVP L R+L S
Sbjct:  234 CFNCGKRGHFARECRMPKKDDKSNK--DERSTSKSKKEDSEETCNVEVNTISSGVDWIADSGASVHMTSQREIFTSF--VEEKTALSLADSSTLMVRGRGNIRVTSYVKGKVVD-VKLQDVYYVPELRRSLFS 361          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A6A6N7F6_HEVBR (CCHC-type domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6N7F6_HEVBR)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-6
Identity = 63/250 (25.20%), Postives = 112/250 (44.80%), Query Frame = 1
Query:   22 SKFMMEIDGLAADLHRLGDKS-VTELRKCVIIVPGLSADFE---MECRMLENAGLNRAEVERVVGNQYSRLLRQQ----QDSKALSASKGTVTANRGKGKNRRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK-----------------------EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
            +++  ++  L  ++  L  ++ + E R   II+ GL  +++      R  +N   +  E E ++  Q + L++Q     Q  KA +      T++RG  KN+    KF+G C+NCGKKGH A  C S +++  S AA  K     D +                       ++W  DSG + HM   R  +  + +      V IA+ + LP+     ++  +    +    V + +V +VPG+ +NLLS
Sbjct:   59 TQYFRKVKSLCREIFELDPQAPMGETRMKRIIIHGLKPEYKGFVAAVRGWQNQP-SLVEFENLLAGQEA-LVKQMGEVSQKGKAKNHQGEGSTSSRGASKNQGKGKKFEGKCYNCGKKGHIAKMCWSKRRTVESNAATSKSEEEWDAEALFATEEDEIALTATTSDLIDYEKDWIVDSGCSNHMTCDREKLQNFSEYKGSHVVVIANNSKLPI---AHVDNTMVSSQYNATEVPLQNVYHVPGMKKNLLS 303          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A5D6Y8Z1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8Z1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.050e-6
Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  319 FDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIK 687
            F G CF CG+ GH+A +CR    +E          A G     W  DSGAT HM+   +  +A + +S    V +A+G  +     G + V L  PG  +  +K  DV Y+PGL R LLS  K
Sbjct:  508 FTGKCFECGRIGHKAAECRRRASNEEITFMATVAPADG-----WLIDSGATSHMSPESSDFAALRPLSEMIKVTVANGAFVTASEVGDVVVAL--PGGRSATLK--DVLYIPGLGRRLLSVQK 621          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645)

HSP 1 Score: 58.2 bits (139), Expect = 2.930e-6
Identity = 40/142 (28.17%), Postives = 67/142 (47.18%), Query Frame = 1
Query:  316 KFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK---------------------EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
            KF GNC+NCGK GH+A DCR+ KK        DKE  +G                        +EW  DSGAT H+   +   + Y        + + +     V+G+G++ + +     + K++ +++V +VP + +NL+S
Sbjct:  258 KFKGNCYNCGKAGHKAPDCRAPKK--------DKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKMT----SGKVLTLNNVMHVPSIRKNLVS 387          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: H3GP57_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP57_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 1.510e-5
Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 1
Query:   22 SKFMMEIDGLAADLHRLGDKSVTELRKCVIIVPGLSADFEMECRMLENAGLNRAEVERVVGNQYSRLLRQQ-----QDSKALSASKGTVTANRGKGKNRRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK----EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNI-LPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKA 690
            SK + E++ L  ++   G +   E   C  ++  L A +E   +    + +   ++  +VG   +  +RQ+     +++ AL A+KG     + K +  R   K  G CFNCGK GH A DCRS    E     D+   A    +    E W  DSGA+ HM  TR     Y  ++   +V  A  +  L V G G +++ +   G +    ++++  +V  LS+NL S   A
Sbjct:  102 SKHVTELEQLVLEMKSAGCEPSDE-DVCATLLRSLPASYESLVQAFRMS-MTELKLTDLVGKLIAEEVRQKDSTRIEEATALLANKGYAKDTKKKQQGGR--RKPSGACFNCGKMGHYARDCRSQASPENE-VLDESNVAFNVTEMFASESWVMDSGASTHMCKTREAFKDYTPMTKSYSVASAKSSAKLKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFSLTAA 328          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: H3H6Z0_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H6Z0_PHYRM)

HSP 1 Score: 54.7 bits (130), Expect = 4.060e-5
Identity = 64/232 (27.59%), Postives = 106/232 (45.69%), Query Frame = 1
Query:   22 SKFMMEIDGLAADLHRLGDKSVTELRKCVIIVPGLSADFEMECRMLENAGLNRAEVERVVGNQYSRLLRQQ-----QDSKALSASKGTVTANRGKGKNRRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK----EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKA 690
            SK + E++ L  ++   G K   E   C  ++  L A +E   +    + +   ++  +VG   +  +RQ+     +++ AL A+KG     + K +  R   K  G CFNCGK GH A DCRS K S  +   D+   A    +    E W  DSGA+ HM  TR  +++ K  +            L V G G +++ +   G +    ++++  +V  LS+NL S   A
Sbjct:   56 SKHVTELEQLVLEMKNAGCKPSDE-DVCATLLRSLPASYESVVQAFRMS-MTELKLTDLVGKLIAEEVRQKDSTRIEEATALLANKGIAKDTKKKQQGGR--RKPSGACFNCGKMGHYARDCRS-KASPENEVLDESNVAFNVTEMFASESWVMDSGASTHMCKTREAVASAKGSAK-----------LKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFSLTAA 270          
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 55.1 bits (131), Expect = 4.060e-5
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  316 KFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKAMEQ 699
            K D  C  C KKGH   +CR          AD K         +W  D+GAT H+  TR     Y+  +   +++ A   IL  +G G IE       +    ++++DV YVPG+SRNL S + A ++
Sbjct:  238 KSDDFCHYCKKKGHWLRECRKW-------LADGKPNI------DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAAHDR 352          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0J8B0L4_BETVV6.470e-1039.06CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A0J7K4F4_LASNI2.670e-933.33Rna-dependent dna polymerase n=1 Tax=Lasius niger ... [more]
UPI00051C49C77.840e-728.10uncharacterized protein LOC104116242 n=2 Tax=Nicot... [more]
A0A0J7K988_LASNI1.140e-635.34Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A6A6N7F6_HEVBR1.840e-625.20CCHC-type domain-containing protein n=1 Tax=Hevea ... [more]
A0A5D6Y8Z1_9STRA2.050e-635.77Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
UPI001F43F6452.930e-628.17hypothetical protein n=1 Tax=Corynebacterium parak... [more]
H3GP57_PHYRM1.510e-527.47Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
H3H6Z0_PHYRM4.060e-527.59CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A4C1SBF3_EUMVA4.060e-532.03Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1046contigA-nodosum_M_contig1046:271233..272078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra85925
PFAMsRetrotran_gag_2,rve,zf-CCHC
Model size702
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.95e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QI8W@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size702
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866421.3946664-CDS-A-nodosum_M_contig1046:271232..2716561680866421.3946664-CDS-A-nodosum_M_contig1046:271232..271656Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 271233..271656 +
1680866421.4066873-CDS-A-nodosum_M_contig1046:271800..2720781680866421.4066873-CDS-A-nodosum_M_contig1046:271800..272078Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 271801..272078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1046.25.1prot_A-nodosum_M_contig1046.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1046 271233..272078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1046.25.1

>prot_A-nodosum_M_contig1046.25.1 ID=prot_A-nodosum_M_contig1046.25.1|Name=mRNA_A-nodosum_M_contig1046.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=234bp
MEPGGGPSKFMMEIDGLAADLHRLGDKSVTELRKCVIIVPGLSADFEMEC
RMLENAGLNRAEVERVVGNQYSRLLRQQQDSKALSASKGTVTANRGKGKN
RRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEW
ESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLD
QPGHTTKMVKMDDVAYVPGLSRNLLSTIKAMEQ*
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mRNA from alignment at A-nodosum_M_contig1046:271233..272078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1046.25.1 ID=mRNA_A-nodosum_M_contig1046.25.1|Name=mRNA_A-nodosum_M_contig1046.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:271233..272078+ (Ascophyllum nodosum dioecious)
ATGGAACCAGGTGGTGGCCCATCTAAGTTTATGATGGAAATTGACGGGCT AGCAGCAGACCTTCACCGTTTGGGTGACAAATCCGTAACCGAACTGAGAA AGTGCGTGATTATTGTGCCTGGTCTGTCTGCGGATTTTGAGATGGAGTGC CGCATGCTAGAGAACGCTGGTCTTAACAGGGCTGAGGTTGAGCGTGTTGT AGGGAATCAGTACAGCAGACTTCTCAGGCAGCAACAGGACTCGAAGGCAT TGTCGGCATCGAAGGGCACCGTAACGGCGAATCGCGGGAAGGGGAAGAAC AGGAGACTCCACCACAAATTCGATGGTAACTGCTTCAATTGCGGAAAGAA AGGTCACCGCGCTGGAGACTGCAGGAGCGCGAAAAAGAGCGAAAGATCCG GAGCTGCCGACGACAAGGAGGGCGGTGTGCACTGTGGTCTGTGCAAGAGC CTTGAGCACCAGACACGAGACTGTAAGGAGCGCGGAGCTGAAAAAGGCGC AATACTGGCAAAACTGGCTGTGCCGGCGGTTCCTGGGGTGAGATCAGTGG CAGCAATGGTGGGAGCAGCTCGTGGCGATAGGAAGGAGGAATGGGAATCA GATTCCGGCGCCACATTCCACATGGCGCACACCCGCGCCGGAATGTCTGC TTATAAGAAGGTGTCGTCGGGGACGACCGTTGAGATCGCCGACGGTAACA TTCTACCGGTGGACGGGTTCGGGAGAATCGAGGTGGATCTGGACCAACCG GGTCACACAACCAAGATGGTGAAGATGGACGATGTTGCGTATGTGCCGGG ACTCTCCCGGAACCTGCTGTCTACCATCAAAGCAATGGAGCAATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1046:271233..272078+

>mRNA_A-nodosum_M_contig1046.25.1 ID=mRNA_A-nodosum_M_contig1046.25.1|Name=mRNA_A-nodosum_M_contig1046.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:271233..272078+ (Ascophyllum nodosum dioecious)
ATGGAACCAGGTGGTGGCCCATCTAAGTTTATGATGGAAATTGACGGGCT
AGCAGCAGACCTTCACCGTTTGGGTGACAAATCCGTAACCGAACTGAGAA
AGTGCGTGATTATTGTGCCTGGTCTGTCTGCGGATTTTGAGATGGAGTGC
CGCATGCTAGAGAACGCTGGTCTTAACAGGGCTGAGGTTGAGCGTGTTGT
AGGGAATCAGTACAGCAGACTTCTCAGGCAGCAACAGGACTCGAAGGCAT
TGTCGGCATCGAAGGGCACCGTAACGGCGAATCGCGGGAAGGGGAAGAAC
AGGAGACTCCACCACAAATTCGATGGTAACTGCTTCAATTGCGGAAAGAA
AGGTCACCGCGCTGGAGACTGCAGGAGCGCGAAAAAGAGCGAAAGATCCG
GAGCTGCCGACGACAAGGAGGGCGCTCGTGGCGATAGGAAGGAGGAATGG
GAATCAGATTCCGGCGCCACATTCCACATGGCGCACACCCGCGCCGGAAT
GTCTGCTTATAAGAAGGTGTCGTCGGGGACGACCGTTGAGATCGCCGACG
GTAACATTCTACCGGTGGACGGGTTCGGGAGAATCGAGGTGGATCTGGAC
CAACCGGGTCACACAACCAAGATGGTGAAGATGGACGATGTTGCGTATGT
GCCGGGACTCTCCCGGAACCTGCTGTCTACCATCAAAGCAATGGAGCAAT
GA
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