mRNA_A-nodosum_M_contig1046.25.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A0J8B0L4_BETVV (CCHC-type domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0L4_BETVV) HSP 1 Score: 66.6 bits (161), Expect = 6.470e-10 Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 1
Query: 325 GNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEW---ES---DSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKA 690
G CFNCGK+GH A DCRS KK E S + D+ GD++E + ES DSGA+ HM + +S + ++ + ADG + G G ++V K V + DV YVP L NLLS A
Sbjct: 64 GRCFNCGKRGHFAKDCRSPKKKEESSSTDELAFVAGDQEELYAVAESCYVDSGASRHMTGNKGLLSNFVELLDAVKIVTADGRTICGIGTGDMKVGRG------KTVTLKDVLYVPDLKMNLLSVSAA 185
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A0J7K4F4_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4F4_LASNI) HSP 1 Score: 67.4 bits (163), Expect = 2.670e-9 Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query: 289 KGKNRRLH-HKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARG------DRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKAMEQ 699
KG N + + KFDG CFNC K GHR+ DCRS KKS+++ +DD A + E W DS AT HM + + K A+ + + G + ++L K++K++++ YVP L NLLS E+
Sbjct: 220 KGNNTKTNFQKFDGKCFNCDKIGHRSRDCRSKKKSDKAANSDDVLTAIACNAELIRKSESWCLDSSATRHMCNDKQKFEVINKDEQSRVYTAAEHYVKSIK-TGNVSLNLKANQRENKVIKLENILYVPELRNNLLSVPTVTER 362
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: UPI00051C49C7 (uncharacterized protein LOC104116242 n=2 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C49C7) HSP 1 Score: 57.0 bits (136), Expect = 7.840e-7 Identity = 34/121 (28.10%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 316 KFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
+F+GNC+NCGK GHR+ DCR+ KK ++ AT H+ R + Y V T+ + + ++G G+I + + + K+V +++V +VP + +NL+S
Sbjct: 25 RFNGNCYNCGKDGHRSADCRAPKKDKKK----------------------ATCHVCAVREAFATYALVGPEGTLSMGNSATAKIEGSGKIFMKMT----SGKVVTLNNVFHVPEIRKNLVS 119
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A0J7K988_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K988_LASNI) HSP 1 Score: 59.7 bits (143), Expect = 1.140e-6 Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1
Query: 331 CFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEE-----------------WESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
CFNCGK+GH A +CR KK ++S D+ +KE+ W +DSGA+ HM R +++ V T + +AD + L V G G I V G VK+ DV YVP L R+L S
Sbjct: 234 CFNCGKRGHFARECRMPKKDDKSNK--DERSTSKSKKEDSEETCNVEVNTISSGVDWIADSGASVHMTSQREIFTSF--VEEKTALSLADSSTLMVRGRGNIRVTSYVKGKVVD-VKLQDVYYVPELRRSLFS 361
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A6A6N7F6_HEVBR (CCHC-type domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6N7F6_HEVBR) HSP 1 Score: 58.9 bits (141), Expect = 1.840e-6 Identity = 63/250 (25.20%), Postives = 112/250 (44.80%), Query Frame = 1
Query: 22 SKFMMEIDGLAADLHRLGDKS-VTELRKCVIIVPGLSADFE---MECRMLENAGLNRAEVERVVGNQYSRLLRQQ----QDSKALSASKGTVTANRGKGKNRRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK-----------------------EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
+++ ++ L ++ L ++ + E R II+ GL +++ R +N + E E ++ Q + L++Q Q KA + T++RG KN+ KF+G C+NCGKKGH A C S +++ S AA K D + ++W DSG + HM R + + + V IA+ + LP+ ++ + + V + +V +VPG+ +NLLS
Sbjct: 59 TQYFRKVKSLCREIFELDPQAPMGETRMKRIIIHGLKPEYKGFVAAVRGWQNQP-SLVEFENLLAGQEA-LVKQMGEVSQKGKAKNHQGEGSTSSRGASKNQGKGKKFEGKCYNCGKKGHIAKMCWSKRRTVESNAATSKSEEEWDAEALFATEEDEIALTATTSDLIDYEKDWIVDSGCSNHMTCDREKLQNFSEYKGSHVVVIANNSKLPI---AHVDNTMVSSQYNATEVPLQNVYHVPGMKKNLLS 303
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A5D6Y8Z1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8Z1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.050e-6 Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 1
Query: 319 FDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIK 687
F G CF CG+ GH+A +CR +E A G W DSGAT HM+ + +A + +S V +A+G + G + V L PG + +K DV Y+PGL R LLS K
Sbjct: 508 FTGKCFECGRIGHKAAECRRRASNEEITFMATVAPADG-----WLIDSGATSHMSPESSDFAALRPLSEMIKVTVANGAFVTASEVGDVVVAL--PGGRSATLK--DVLYIPGLGRRLLSVQK 621
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645) HSP 1 Score: 58.2 bits (139), Expect = 2.930e-6 Identity = 40/142 (28.17%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 316 KFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK---------------------EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLS 678
KF GNC+NCGK GH+A DCR+ KK DKE +G +EW DSGAT H+ + + Y + + + V+G+G++ + + + K++ +++V +VP + +NL+S
Sbjct: 258 KFKGNCYNCGKAGHKAPDCRAPKK--------DKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKMT----SGKVLTLNNVMHVPSIRKNLVS 387
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: H3GP57_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP57_PHYRM) HSP 1 Score: 56.2 bits (134), Expect = 1.510e-5 Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 1
Query: 22 SKFMMEIDGLAADLHRLGDKSVTELRKCVIIVPGLSADFEMECRMLENAGLNRAEVERVVGNQYSRLLRQQ-----QDSKALSASKGTVTANRGKGKNRRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK----EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNI-LPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKA 690
SK + E++ L ++ G + E C ++ L A +E + + + ++ +VG + +RQ+ +++ AL A+KG + K + R K G CFNCGK GH A DCRS E D+ A + E W DSGA+ HM TR Y ++ +V A + L V G G +++ + G + ++++ +V LS+NL S A
Sbjct: 102 SKHVTELEQLVLEMKSAGCEPSDE-DVCATLLRSLPASYESLVQAFRMS-MTELKLTDLVGKLIAEEVRQKDSTRIEEATALLANKGYAKDTKKKQQGGR--RKPSGACFNCGKMGHYARDCRSQASPENE-VLDESNVAFNVTEMFASESWVMDSGASTHMCKTREAFKDYTPMTKSYSVASAKSSAKLKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFSLTAA 328
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: H3H6Z0_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H6Z0_PHYRM) HSP 1 Score: 54.7 bits (130), Expect = 4.060e-5 Identity = 64/232 (27.59%), Postives = 106/232 (45.69%), Query Frame = 1
Query: 22 SKFMMEIDGLAADLHRLGDKSVTELRKCVIIVPGLSADFEMECRMLENAGLNRAEVERVVGNQYSRLLRQQ-----QDSKALSASKGTVTANRGKGKNRRLHHKFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRK----EEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKA 690
SK + E++ L ++ G K E C ++ L A +E + + + ++ +VG + +RQ+ +++ AL A+KG + K + R K G CFNCGK GH A DCRS K S + D+ A + E W DSGA+ HM TR +++ K + L V G G +++ + G + ++++ +V LS+NL S A
Sbjct: 56 SKHVTELEQLVLEMKNAGCKPSDE-DVCATLLRSLPASYESVVQAFRMS-MTELKLTDLVGKLIAEEVRQKDSTRIEEATALLANKGIAKDTKKKQQGGR--RKPSGACFNCGKMGHYARDCRS-KASPENEVLDESNVAFNVTEMFASESWVMDSGASTHMCKTREAVASAKGSAK-----------LKVLGHGTVQLRV-WSGRSWINARLENALHVQDLSKNLFSLTAA 270
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA) HSP 1 Score: 55.1 bits (131), Expect = 4.060e-5 Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 1
Query: 316 KFDGNCFNCGKKGHRAGDCRSAKKSERSGAADDKEGARGDRKEEWESDSGATFHMAHTRAGMSAYKKVSSGTTVEIADGNILPVDGFGRIEVDLDQPGHTTKMVKMDDVAYVPGLSRNLLSTIKAMEQ 699
K D C C KKGH +CR AD K +W D+GAT H+ TR Y+ + +++ A IL +G G IE + ++++DV YVPG+SRNL S + A ++
Sbjct: 238 KSDDFCHYCKKKGHWLRECRKW-------LADGKPNI------DWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEFLSRINQNLEIQIRLEDVWYVPGISRNLFSVLAAHDR 352 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1046.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1046.25.1 >prot_A-nodosum_M_contig1046.25.1 ID=prot_A-nodosum_M_contig1046.25.1|Name=mRNA_A-nodosum_M_contig1046.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=234bp MEPGGGPSKFMMEIDGLAADLHRLGDKSVTELRKCVIIVPGLSADFEMECback to top mRNA from alignment at A-nodosum_M_contig1046:271233..272078+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1046.25.1 ID=mRNA_A-nodosum_M_contig1046.25.1|Name=mRNA_A-nodosum_M_contig1046.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:271233..272078+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1046:271233..272078+ >mRNA_A-nodosum_M_contig1046.25.1 ID=mRNA_A-nodosum_M_contig1046.25.1|Name=mRNA_A-nodosum_M_contig1046.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:271233..272078+ (Ascophyllum nodosum dioecious)back to top |