mRNA_A-nodosum_M_contig10455.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10455.2.1
Unique NamemRNA_A-nodosum_M_contig10455.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10455.2.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.710e-6
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  136 MANLKEIKPVSAEALNKNPHNLLANYADRGNMTWNQSTSNFLESTNSMLGAE 291
            M  ++ + P + + LN  PHN  ANYA + N+ W+Q+TSNF ES N ++G E
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLIGEE 52
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10455.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA84_9PHAE3.710e-644.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10455contigA-nodosum_M_contig10455:4890..5513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size320
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866419.9977067-CDS-A-nodosum_M_contig10455:4889..49611680866419.9977067-CDS-A-nodosum_M_contig10455:4889..4961Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10455 4890..4961 +
1680866420.0077074-CDS-A-nodosum_M_contig10455:5266..55061680866420.0077074-CDS-A-nodosum_M_contig10455:5266..5506Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10455 5267..5506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.0174756-UTR-A-nodosum_M_contig10455:5506..55131680866420.0174756-UTR-A-nodosum_M_contig10455:5506..5513Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10455 5507..5513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10455.2.1prot_A-nodosum_M_contig10455.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10455 4890..5506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10455.2.1

>prot_A-nodosum_M_contig10455.2.1 ID=prot_A-nodosum_M_contig10455.2.1|Name=mRNA_A-nodosum_M_contig10455.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
AVCPFTGDCRCLEHILTNIPAVGDVGKTLCYEMSKAPTEGIFNKYMANLK
EIKPVSAEALNKNPHNLLANYADRGNMTWNQSTSNFLESTNSMLGAEVWI
TTA*
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mRNA from alignment at A-nodosum_M_contig10455:4890..5513+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10455.2.1 ID=mRNA_A-nodosum_M_contig10455.2.1|Name=mRNA_A-nodosum_M_contig10455.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at A-nodosum_M_contig10455:4890..5513+ (Ascophyllum nodosum dioecious)
GCCGTGTGTCCATTTACCGGGGATTGCCGATGCCTGGAACATATTCTGAC
GAATATTCCAGCTGTCGGAGATGTAAGCGCGCCGTTTGAATTTTGAGAAG
GATCGCGTGCGGGTGGACTGCAGTGTATAGTCGAAGGATTTGAGTCGTTT
AAGGTTTTTGGAGACGTTTATCTTCATCCATTCTTCTTGTCAGACAGCGT
ACTCGAACACCTCACGTTCACGGTCTTGAGGAAAGTGCTCTAATCGCCGT
CCAGTCATAACACGACGGCGTCAGTCACGACATGATAGTGTCACATTTTC
CGCTACAATGTTTCCGCCGGGCTTGGTGCTATTACTAGGTACGGATCTAA
AGCAATGTCCCCATCATTCTGCTACAGGTGGGAAAGACCCTATGTTACGA
GATGTCCAAAGCACCAACCGAGGGAATCTTCAACAAGTACATGGCCAACC
TGAAAGAGATAAAGCCTGTCTCCGCCGAAGCGCTGAACAAGAATCCACAC
AATCTTTTGGCAAACTACGCAGATCGCGGGAACATGACTTGGAACCAATC
TACAAGCAACTTTTTAGAGTCCACGAATAGCATGCTGGGGGCCGAGGTAT
GGATCACCACAGCCTAATATGCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10455:4890..5513+

>mRNA_A-nodosum_M_contig10455.2.1 ID=mRNA_A-nodosum_M_contig10455.2.1|Name=mRNA_A-nodosum_M_contig10455.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig10455:4890..5513+ (Ascophyllum nodosum dioecious)
GCCGTGTGTCCATTTACCGGGGATTGCCGATGCCTGGAACATATTCTGAC
GAATATTCCAGCTGTCGGAGATGTGGGAAAGACCCTATGTTACGAGATGT
CCAAAGCACCAACCGAGGGAATCTTCAACAAGTACATGGCCAACCTGAAA
GAGATAAAGCCTGTCTCCGCCGAAGCGCTGAACAAGAATCCACACAATCT
TTTGGCAAACTACGCAGATCGCGGGAACATGACTTGGAACCAATCTACAA
GCAACTTTTTAGAGTCCACGAATAGCATGCTGGGGGCCGAGGTATGGATC
ACCACAGCCTAA
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